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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 930 |
| AccB1I | GGYRCC | 1 cut(s) | 1043 |
| AccI | GTMKAC | 1 cut(s) | 196 |
| AccII | CGCG | 1 cut(s) | 870 |
| AciI | CCGC | 2 cut(s) | 379, 562 |
| AclWI | GGATC | 1 cut(s) | 146 |
| AcsI | RAATTY | 2 cut(s) | 617, 629 |
| AcyI | GRCGYC | 1 cut(s) | 1044 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 881 |
| AflIII | ACRYGT | 1 cut(s) | 100 |
| AgsI | TTSAA | 3 cut(s) | 353, 577, 1081 |
| AjiI | CACGTC | 4 cut(s) | 164, 176, 203, 436 |
| AjnI | CCWGG | 2 cut(s) | 278, 429 |
| AluBI | AGCT | 9 cut(s) | 251, 267, 455, 461, 763, 773, 1088, 1166, 1217 |
| AluI | AGCT | 9 cut(s) | 251, 267, 455, 461, 763, 773, 1088, 1166, 1217 |
| Alw21I | GWGCWC | 2 cut(s) | 765, 1168 |
| Alw26I | GTCTC | 1 cut(s) | 697 |
| AlwI | GGATC | 1 cut(s) | 146 |
| AoxI | GGCC | 3 cut(s) | 41, 134, 393 |
| ApeKI | GCWGC | 3 cut(s) | 255, 479, 1085 |
| ApoI | RAATTY | 2 cut(s) | 617, 629 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 511, 543 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 606 |
| AspLEI | GCGC | 2 cut(s) | 872, 1046 |
| AspS9I | GGNCC | 3 cut(s) | 135, 233, 932 |
| AsuC2I | CCSGG | 1 cut(s) | 133 |
| AsuHPI | GGTGA | 2 cut(s) | 1007, 1174 |
| AvaII | GGWCC | 2 cut(s) | 233, 932 |
| BaeGI | GKGCMC | 1 cut(s) | 1153 |
| BanI | GGYRCC | 1 cut(s) | 1043 |
| BanII | GRGCYC | 2 cut(s) | 765, 1168 |
| BauI | CACGAG | 1 cut(s) | 1167 |
| BbsI | GAAGAC | 2 cut(s) | 677, 1242 |
| Bbv12I | GWGCWC | 2 cut(s) | 765, 1168 |
| BbvI | GCAGC | 3 cut(s) | 242, 491, 1097 |
| BccI | CCATC | 2 cut(s) | 515, 697 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 716, 750 |
| BciT130I | CCWGG | 2 cut(s) | 280, 431 |
| BciVI | GTATCC | 1 cut(s) | 403 |
| BclI | TGATCA | 1 cut(s) | 1141 |
| BcnI | CCSGG | 1 cut(s) | 133 |
| BcoDI | GTCTC | 1 cut(s) | 697 |
| BfaI | CTAG | 3 cut(s) | 426, 1029, 1253 |
| BfoI | RGCGCY | 1 cut(s) | 1047 |
| BfuI | GTATCC | 1 cut(s) | 403 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 488 |
| BglII | AGATCT | 1 cut(s) | 827 |
| BisI | GCNGC | 3 cut(s) | 256, 480, 1086 |
| BlsI | GCNGC | 3 cut(s) | 257, 481, 1087 |
| Bme1390I | CCNGG | 3 cut(s) | 133, 280, 431 |
| Bme18I | GGWCC | 2 cut(s) | 233, 932 |
| BmgBI | CACGTC | 4 cut(s) | 164, 176, 203, 436 |
| BmgT120I | GGNCC | 3 cut(s) | 135, 233, 932 |
| BmiI | GGNNCC | 5 cut(s) | 234, 235, 887, 986, 1045 |
| BmrFI | CCNGG | 3 cut(s) | 133, 280, 431 |
| BmsI | GCATC | 1 cut(s) | 394 |
| BpiI | GAAGAC | 2 cut(s) | 677, 1242 |
| BpuEI | CTTGAG | 3 cut(s) | 374, 404, 441 |
| BpuMI | CCSGG | 1 cut(s) | 133 |
| Bsa29I | ATCGAT | 1 cut(s) | 726 |
| BsaHI | GRCGYC | 1 cut(s) | 1044 |
| BsaJI | CCNNGG | 2 cut(s) | 278, 1000 |
| BsaWI | WCCGGW | 1 cut(s) | 297 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 881 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| Bse3DI | GCAATG | 1 cut(s) | 1027 |
| BseBI | CCWGG | 2 cut(s) | 280, 431 |
| BseCI | ATCGAT | 1 cut(s) | 726 |
| BseDI | CCNNGG | 2 cut(s) | 278, 1000 |
| BseGI | GGATG | 4 cut(s) | 169, 510, 538, 801 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 881 |
| BseMI | GCAATG | 1 cut(s) | 1027 |
| BseMII | CTCAG | 1 cut(s) | 612 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseSI | GKGCMC | 1 cut(s) | 1153 |
| BseXI | GCAGC | 3 cut(s) | 242, 491, 1097 |
| Bsh1236I | CGCG | 1 cut(s) | 870 |
| Bsh1285I | CGRYCG | 1 cut(s) | 298 |
| BshFI | GGCC | 3 cut(s) | 43, 136, 395 |
| BshNI | GGYRCC | 1 cut(s) | 1043 |
| BshVI | ATCGAT | 1 cut(s) | 726 |
| BsiEI | CGRYCG | 1 cut(s) | 298 |
| BsiHKAI | GWGCWC | 2 cut(s) | 765, 1168 |
| BsiSI | CCGG | 2 cut(s) | 133, 298 |
| BslFI | GGGAC | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 881 |
| BsmAI | GTCTC | 1 cut(s) | 697 |
| BsmBI | CGTCTC | 1 cut(s) | 697 |
| BsmFI | GGGAC | 1 cut(s) | 246 |
| BsmI | GAATGC | 1 cut(s) | 225 |
| BsnI | GGCC | 3 cut(s) | 43, 136, 395 |
| Bsp1286I | GDGCHC | 3 cut(s) | 765, 1153, 1168 |
| Bsp143I | GATC | 5 cut(s) | 151, 645, 827, 1141, 1249 |
| BspACI | CCGC | 2 cut(s) | 379, 562 |
| BspANI | GGCC | 3 cut(s) | 43, 136, 395 |
| BspCNI | CTCAG | 1 cut(s) | 611 |
| BspDI | ATCGAT | 1 cut(s) | 726 |
| BspFNI | CGCG | 1 cut(s) | 870 |
| BspHI | TCATGA | 1 cut(s) | 757 |
| BspLI | GGNNCC | 5 cut(s) | 234, 235, 887, 986, 1045 |
| BspPI | GGATC | 1 cut(s) | 146 |
| BspT107I | GGYRCC | 1 cut(s) | 1043 |
| BsrDI | GCAATG | 1 cut(s) | 1027 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 2 cut(s) | 278, 1000 |
| BssMI | GATC | 5 cut(s) | 151, 645, 827, 1141, 1249 |
| BssNI | GRCGYC | 1 cut(s) | 1044 |
| BssSI | CACGAG | 1 cut(s) | 1167 |
| Bst2BI | CACGAG | 1 cut(s) | 1167 |
| Bst2UI | CCWGG | 2 cut(s) | 280, 431 |
| Bst4CI | ACNGT | 2 cut(s) | 445, 1001 |
| Bst6I | CTCTTC | 1 cut(s) | 985 |
| BstACI | GRCGYC | 1 cut(s) | 1044 |
| BstC8I | GCNNGC | 3 cut(s) | 253, 383, 453 |
| BstDEI | CTNAG | 5 cut(s) | 484, 598, 711, 908, 1056 |
| BstDSI | CCRYGG | 1 cut(s) | 1000 |
| BstEII | GGTNACC | 1 cut(s) | 995 |
| BstF5I | GGATG | 4 cut(s) | 169, 510, 538, 801 |
| BstFNI | CGCG | 1 cut(s) | 870 |
| BstH2I | RGCGCY | 1 cut(s) | 1047 |
| BstHHI | GCGC | 2 cut(s) | 872, 1046 |
| BstKTI | GATC | 5 cut(s) | 154, 648, 830, 1144, 1252 |
| BstMAI | GTCTC | 1 cut(s) | 697 |
| BstMBI | GATC | 5 cut(s) | 151, 645, 827, 1141, 1249 |
| BstMCI | CGRYCG | 1 cut(s) | 298 |
| BstNI | CCWGG | 2 cut(s) | 280, 431 |
| BstPI | GGTNACC | 1 cut(s) | 995 |
| BstSCI | CCNGG | 3 cut(s) | 131, 278, 429 |
| BstSLI | GKGCMC | 1 cut(s) | 1153 |
| BstUI | CGCG | 1 cut(s) | 870 |
| BstV1I | GCAGC | 3 cut(s) | 242, 491, 1097 |
| BstV2I | GAAGAC | 2 cut(s) | 677, 1242 |
| BstX2I | RGATCY | 1 cut(s) | 827 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1040 |
| BstYI | RGATCY | 1 cut(s) | 827 |
| Bsu15I | ATCGAT | 1 cut(s) | 726 |
| BsuI | GTATCC | 1 cut(s) | 403 |
| BsuRI | GGCC | 3 cut(s) | 43, 136, 395 |
| BsuTUI | ATCGAT | 1 cut(s) | 726 |
| BtgI | CCRYGG | 1 cut(s) | 1000 |
| BtgZI | GCGATG | 1 cut(s) | 671 |
| BtrI | CACGTC | 4 cut(s) | 164, 176, 203, 436 |
| BtsCI | GGATG | 4 cut(s) | 169, 510, 538, 801 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 4 cut(s) | 120, 138, 237, 783 |
| Cac8I | GCNNGC | 3 cut(s) | 253, 383, 453 |
| CciI | TCATGA | 1 cut(s) | 757 |
| CfoI | GCGC | 2 cut(s) | 872, 1046 |
| Cfr13I | GGNCC | 3 cut(s) | 135, 233, 932 |
| ClaI | ATCGAT | 1 cut(s) | 726 |
| CseI | GACGC | 1 cut(s) | 1082 |
| CviAII | CATG | 3 cut(s) | 758, 794, 1034 |
| DdeI | CTNAG | 5 cut(s) | 484, 598, 711, 908, 1056 |
| DinI | GGCGCC | 1 cut(s) | 1045 |
| DpnI | GATC | 5 cut(s) | 153, 647, 829, 1143, 1251 |
| DpnII | GATC | 5 cut(s) | 151, 645, 827, 1141, 1249 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 930 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 930 |
| Eam1104I | CTCTTC | 1 cut(s) | 985 |
| EarI | CTCTTC | 1 cut(s) | 985 |
| EciI | GGCGGA | 1 cut(s) | 368 |
| Ecl136II | GAGCTC | 2 cut(s) | 763, 1166 |
| Eco24I | GRGCYC | 2 cut(s) | 765, 1168 |
| Eco32I | GATATC | 1 cut(s) | 376 |
| Eco47I | GGWCC | 2 cut(s) | 233, 932 |
| Eco53kI | GAGCTC | 2 cut(s) | 763, 1166 |
| Eco91I | GGTNACC | 1 cut(s) | 995 |
| EcoICRI | GAGCTC | 2 cut(s) | 763, 1166 |
| EcoO109I | RGGNCCY | 1 cut(s) | 233 |
| EcoO65I | GGTNACC | 1 cut(s) | 995 |
| EcoRI | GAATTC | 1 cut(s) | 629 |
| EcoRII | CCWGG | 2 cut(s) | 278, 429 |
| EcoRV | GATATC | 1 cut(s) | 376 |
| EcoT38I | GRGCYC | 2 cut(s) | 765, 1168 |
| EgeI | GGCGCC | 1 cut(s) | 1045 |
| EheI | GGCGCC | 1 cut(s) | 1045 |
| Esp3I | CGTCTC | 1 cut(s) | 697 |
| FaeI | CATG | 3 cut(s) | 761, 797, 1037 |
| FaqI | GGGAC | 1 cut(s) | 246 |
| FatI | CATG | 3 cut(s) | 757, 793, 1033 |
| FbaI | TGATCA | 1 cut(s) | 1141 |
| FblI | GTMKAC | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 3 cut(s) | 256, 480, 1086 |
| FokI | GGATG | 4 cut(s) | 156, 497, 545, 788 |
| FriOI | GRGCYC | 2 cut(s) | 765, 1168 |
| Fsp4HI | GCNGC | 3 cut(s) | 256, 480, 1086 |
| FspBI | CTAG | 3 cut(s) | 426, 1029, 1253 |
| GlaI | GCGC | 2 cut(s) | 871, 1045 |
| GluI | GCNGC | 3 cut(s) | 256, 480, 1086 |
| HaeII | RGCGCY | 1 cut(s) | 1047 |
| HaeIII | GGCC | 3 cut(s) | 43, 136, 395 |
| HapII | CCGG | 2 cut(s) | 133, 298 |
| HgaI | GACGC | 1 cut(s) | 1082 |
| HhaI | GCGC | 2 cut(s) | 872, 1046 |
| Hin1I | GRCGYC | 1 cut(s) | 1044 |
| Hin1II | CATG | 3 cut(s) | 761, 797, 1037 |
| Hin6I | GCGC | 2 cut(s) | 870, 1044 |
| HinP1I | GCGC | 2 cut(s) | 870, 1044 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HindIII | AAGCTT | 1 cut(s) | 459 |
| HinfI | GANTC | 7 cut(s) | 10, 402, 536, 673, 723, 744, 1060 |
| HpaII | CCGG | 2 cut(s) | 133, 298 |
| HphI | GGTGA | 2 cut(s) | 1007, 1174 |
| Hpy166II | GTNNAC | 2 cut(s) | 197, 292 |
| Hpy188I | TCNGA | 3 cut(s) | 601, 852, 1141 |
| Hpy188III | TCNNGA | 6 cut(s) | 371, 587, 758, 825, 1169, 1253 |
| Hpy8I | GTNNAC | 2 cut(s) | 197, 292 |
| HpyAV | CCTTC | 1 cut(s) | 950 |
| HpyCH4III | ACNGT | 2 cut(s) | 445, 1001 |
| HpyCH4IV | ACGT | 7 cut(s) | 102, 163, 175, 202, 245, 261, 435 |
| HpyCH4V | TGCA | 2 cut(s) | 698, 737 |
| HpyF3I | CTNAG | 5 cut(s) | 484, 598, 711, 908, 1056 |
| HpySE526I | ACGT | 7 cut(s) | 102, 163, 175, 202, 245, 261, 435 |
| Hsp92I | GRCGYC | 1 cut(s) | 1044 |
| Hsp92II | CATG | 3 cut(s) | 761, 797, 1037 |
| HspAI | GCGC | 2 cut(s) | 870, 1044 |
| KasI | GGCGCC | 1 cut(s) | 1043 |
| KflI | GGGWCCC | 1 cut(s) | 233 |
| Ksp22I | TGATCA | 1 cut(s) | 1141 |
| Kzo9I | GATC | 5 cut(s) | 151, 645, 827, 1141, 1249 |
| LmnI | GCTCC | 4 cut(s) | 334, 546, 770, 885 |
| Lsp1109I | GCAGC | 3 cut(s) | 242, 491, 1097 |
| LweI | GCATC | 1 cut(s) | 394 |
| MaeI | CTAG | 3 cut(s) | 426, 1029, 1253 |
| MaeII | ACGT | 7 cut(s) | 102, 163, 175, 202, 245, 261, 435 |
| MaeIII | GTNAC | 4 cut(s) | 305, 781, 995, 1180 |
| MalI | GATC | 5 cut(s) | 153, 647, 829, 1143, 1251 |
| MboI | GATC | 5 cut(s) | 151, 645, 827, 1141, 1249 |
| MboII | GAAGA | 7 cut(s) | 72, 682, 823, 1002, 1184, 1247, 1256 |
| MflI | RGATCY | 1 cut(s) | 827 |
| MhlI | GDGCHC | 3 cut(s) | 765, 1153, 1168 |
| MluCI | AATT | 8 cut(s) | 81, 317, 414, 617, 629, 820, 859, 1176 |
| Mly113I | GGCGCC | 1 cut(s) | 1044 |
| MlyI | GAGTC | 2 cut(s) | 667, 1069 |
| MnlI | CCTC | 9 cut(s) | 33, 38, 481, 569, 875, 986, 1006, 1010, 1036 |
| MroXI | GAANNNNTTC | 1 cut(s) | 606 |
| MseI | TTAA | 3 cut(s) | 272, 615, 623 |
| MslI | CAYNNNNRTG | 5 cut(s) | 515, 531, 806, 1038, 1068 |
| MspI | CCGG | 2 cut(s) | 133, 298 |
| MspR9I | CCNGG | 3 cut(s) | 133, 280, 431 |
| Mva1269I | GAATGC | 1 cut(s) | 225 |
| MvaI | CCWGG | 2 cut(s) | 280, 431 |
| MvnI | CGCG | 1 cut(s) | 870 |
| NarI | GGCGCC | 1 cut(s) | 1044 |
| NciI | CCSGG | 1 cut(s) | 133 |
| NdeII | GATC | 5 cut(s) | 151, 645, 827, 1141, 1249 |
| NlaIII | CATG | 3 cut(s) | 761, 797, 1037 |
| NlaIV | GGNNCC | 5 cut(s) | 234, 235, 887, 986, 1045 |
| NmuCI | GTSAC | 3 cut(s) | 781, 995, 1180 |
| PagI | TCATGA | 1 cut(s) | 757 |
| PctI | GAATGC | 1 cut(s) | 225 |
| PdmI | GAANNNNTTC | 1 cut(s) | 606 |
| PfeI | GAWTC | 5 cut(s) | 10, 402, 536, 723, 744 |
| PkrI | GCNGC | 3 cut(s) | 257, 481, 1087 |
| PleI | GAGTC | 2 cut(s) | 667, 1068 |
| PluTI | GGCGCC | 1 cut(s) | 1047 |
| PpsI | GAGTC | 2 cut(s) | 667, 1068 |
| PpuMI | RGGWCCY | 1 cut(s) | 233 |
| Psp124BI | GAGCTC | 2 cut(s) | 765, 1168 |
| Psp5II | RGGWCCY | 1 cut(s) | 233 |
| Psp6I | CCWGG | 2 cut(s) | 278, 429 |
| PspEI | GGTNACC | 1 cut(s) | 995 |
| PspGI | CCWGG | 2 cut(s) | 278, 429 |
| PspN4I | GGNNCC | 5 cut(s) | 234, 235, 887, 986, 1045 |
| PspPI | GGNCC | 3 cut(s) | 135, 233, 932 |
| PspPPI | RGGWCCY | 1 cut(s) | 233 |
| PsuI | RGATCY | 1 cut(s) | 827 |
| RseI | CAYNNNNRTG | 5 cut(s) | 515, 531, 806, 1038, 1068 |
| SacI | GAGCTC | 2 cut(s) | 765, 1168 |
| SaqAI | TTAA | 3 cut(s) | 272, 615, 623 |
| SatI | GCNGC | 3 cut(s) | 256, 480, 1086 |
| Sau3AI | GATC | 5 cut(s) | 151, 645, 827, 1141, 1249 |
| Sau96I | GGNCC | 3 cut(s) | 135, 233, 932 |
| SchI | GAGTC | 2 cut(s) | 667, 1069 |
| ScrFI | CCNGG | 3 cut(s) | 133, 280, 431 |
| SduI | GDGCHC | 3 cut(s) | 765, 1153, 1168 |
| SfaNI | GCATC | 1 cut(s) | 394 |
| SfoI | GGCGCC | 1 cut(s) | 1045 |
| SinI | GGWCC | 2 cut(s) | 233, 932 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 515, 531, 806, 1038, 1068 |
| SmlI | CTYRAG | 3 cut(s) | 389, 419, 456 |
| SmoI | CTYRAG | 3 cut(s) | 389, 419, 456 |
| Sse9I | AATT | 8 cut(s) | 81, 317, 414, 617, 629, 820, 859, 1176 |
| SsiI | CCGC | 2 cut(s) | 379, 562 |
| SspDI | GGCGCC | 1 cut(s) | 1043 |
| SspMI | CTAG | 3 cut(s) | 426, 1029, 1253 |
| SstI | GAGCTC | 2 cut(s) | 765, 1168 |
| StyD4I | CCNGG | 3 cut(s) | 131, 278, 429 |
| TaaI | ACNGT | 2 cut(s) | 445, 1001 |
| TaiI | ACGT | 7 cut(s) | 105, 166, 178, 205, 248, 264, 438 |
| TaqI | TCGA | 3 cut(s) | 721, 726, 824 |
| TasI | AATT | 8 cut(s) | 81, 317, 414, 617, 629, 820, 859, 1176 |
| TfiI | GAWTC | 5 cut(s) | 10, 402, 536, 723, 744 |
| Tru1I | TTAA | 3 cut(s) | 272, 615, 623 |
| Tru9I | TTAA | 3 cut(s) | 272, 615, 623 |
| TscAI | CASTG | 4 cut(s) | 127, 145, 244, 790 |
| TseFI | GTSAC | 3 cut(s) | 781, 995, 1180 |
| TseI | GCWGC | 3 cut(s) | 255, 479, 1085 |
| Tsp45I | GTSAC | 3 cut(s) | 781, 995, 1180 |
| TspDTI | ATGAA | 1 cut(s) | 746 |
| TspGWI | ACGGA | 1 cut(s) | 997 |
| TspRI | CASTG | 4 cut(s) | 127, 145, 244, 790 |
| VpaK11BI | GGWCC | 2 cut(s) | 233, 932 |
| XapI | RAATTY | 2 cut(s) | 617, 629 |
| XbaI | TCTAGA | 1 cut(s) | 1252 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 403 |
| XmiI | GTMKAC | 1 cut(s) | 196 |
| XmnI | GAANNNNTTC | 1 cut(s) | 606 |
| XspI | CTAG | 3 cut(s) | 426, 1029, 1253 |