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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 39 |
| AccB1I | GGYRCC | 1 cut(s) | 36 |
| AciI | CCGC | 4 cut(s) | 34, 170, 250, 532 |
| AclWI | GGATC | 1 cut(s) | 7 |
| AcoI | YGGCCR | 2 cut(s) | 53, 73 |
| AcsI | RAATTY | 2 cut(s) | 149, 599 |
| AcyI | GRCGYC | 1 cut(s) | 37 |
| AfaI | GTAC | 1 cut(s) | 419 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 78 |
| AflIII | ACRYGT | 1 cut(s) | 306 |
| AgeI | ACCGGT | 1 cut(s) | 113 |
| AgsI | TTSAA | 2 cut(s) | 144, 547 |
| AjiI | CACGTC | 1 cut(s) | 307 |
| AjnI | CCWGG | 4 cut(s) | 16, 128, 276, 300 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 459, 491 |
| AluBI | AGCT | 4 cut(s) | 85, 326, 332, 451 |
| AluI | AGCT | 4 cut(s) | 85, 326, 332, 451 |
| Alw26I | GTCTC | 1 cut(s) | 463 |
| AlwI | GGATC | 1 cut(s) | 7 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 31 |
| AoxI | GGCC | 2 cut(s) | 53, 73 |
| ApeKI | GCWGC | 1 cut(s) | 99 |
| ApoI | RAATTY | 2 cut(s) | 149, 599 |
| AsiGI | ACCGGT | 1 cut(s) | 113 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 576 |
| AspLEI | GCGC | 1 cut(s) | 39 |
| AsuHPI | GGTGA | 1 cut(s) | 111 |
| BanI | GGYRCC | 1 cut(s) | 36 |
| BbsI | GAAGAC | 2 cut(s) | 444, 647 |
| BbvI | GCAGC | 1 cut(s) | 111 |
| BccI | CCATC | 6 cut(s) | 130, 263, 386, 513, 667, 668 |
| BciT130I | CCWGG | 4 cut(s) | 18, 130, 278, 302 |
| BcoDI | GTCTC | 1 cut(s) | 463 |
| BfaI | CTAG | 3 cut(s) | 297, 444, 509 |
| BfoI | RGCGCY | 1 cut(s) | 40 |
| BfuAI | ACCTGC | 1 cut(s) | 39 |
| BisI | GCNGC | 2 cut(s) | 35, 100 |
| BlsI | GCNGC | 2 cut(s) | 36, 101 |
| Bme1390I | CCNGG | 4 cut(s) | 18, 130, 278, 302 |
| BmgBI | CACGTC | 1 cut(s) | 307 |
| BmiI | GGNNCC | 1 cut(s) | 38 |
| BmrFI | CCNGG | 4 cut(s) | 18, 130, 278, 302 |
| BmsI | GCATC | 2 cut(s) | 142, 265 |
| BpiI | GAAGAC | 2 cut(s) | 444, 647 |
| BpmI | CTGGAG | 1 cut(s) | 398 |
| BpuEI | CTTGAG | 3 cut(s) | 245, 311, 312 |
| Bsa29I | ATCGAT | 1 cut(s) | 696 |
| BsaHI | GRCGYC | 1 cut(s) | 37 |
| BsaI | GGTCTC | 1 cut(s) | 463 |
| BsaJI | CCNNGG | 1 cut(s) | 16 |
| BsaWI | WCCGGW | 2 cut(s) | 78, 113 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 78 |
| Bse118I | RCCGGY | 3 cut(s) | 51, 71, 113 |
| Bse1I | ACTGG | 2 cut(s) | 220, 415 |
| BseBI | CCWGG | 4 cut(s) | 18, 130, 278, 302 |
| BseCI | ATCGAT | 1 cut(s) | 696 |
| BseDI | CCNNGG | 1 cut(s) | 16 |
| BseGI | GGATG | 4 cut(s) | 133, 381, 409, 660 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 78 |
| BseMII | CTCAG | 1 cut(s) | 164 |
| BseNI | ACTGG | 2 cut(s) | 220, 415 |
| BseX3I | CGGCCG | 1 cut(s) | 53 |
| BseXI | GCAGC | 1 cut(s) | 111 |
| Bsh1285I | CGRYCG | 1 cut(s) | 56 |
| BshFI | GGCC | 2 cut(s) | 55, 75 |
| BshNI | GGYRCC | 1 cut(s) | 36 |
| BshTI | ACCGGT | 1 cut(s) | 113 |
| BshVI | ATCGAT | 1 cut(s) | 696 |
| BsiEI | CGRYCG | 1 cut(s) | 56 |
| BsiSI | CCGG | 5 cut(s) | 52, 56, 72, 79, 114 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 78 |
| BsmAI | GTCTC | 1 cut(s) | 463 |
| BsnI | GGCC | 2 cut(s) | 55, 75 |
| Bso31I | GGTCTC | 1 cut(s) | 463 |
| Bsp143I | GATC | 2 cut(s) | 12, 615 |
| BspACI | CCGC | 4 cut(s) | 34, 170, 250, 532 |
| BspANI | GGCC | 2 cut(s) | 55, 75 |
| BspCNI | CTCAG | 1 cut(s) | 165 |
| BspDI | ATCGAT | 1 cut(s) | 696 |
| BspLI | GGNNCC | 1 cut(s) | 38 |
| BspMI | ACCTGC | 1 cut(s) | 39 |
| BspPI | GGATC | 1 cut(s) | 7 |
| BspT107I | GGYRCC | 1 cut(s) | 36 |
| BspTNI | GGTCTC | 1 cut(s) | 463 |
| BsrFI | RCCGGY | 3 cut(s) | 51, 71, 113 |
| BsrI | ACTGG | 2 cut(s) | 220, 415 |
| BssAI | RCCGGY | 3 cut(s) | 51, 71, 113 |
| BssECI | CCNNGG | 1 cut(s) | 16 |
| BssMI | GATC | 2 cut(s) | 12, 615 |
| BssNI | GRCGYC | 1 cut(s) | 37 |
| Bst2UI | CCWGG | 4 cut(s) | 18, 130, 278, 302 |
| Bst4CI | ACNGT | 1 cut(s) | 316 |
| BstACI | GRCGYC | 1 cut(s) | 37 |
| BstC8I | GCNNGC | 2 cut(s) | 254, 324 |
| BstDEI | CTNAG | 3 cut(s) | 173, 355, 681 |
| BstF5I | GGATG | 4 cut(s) | 133, 381, 409, 660 |
| BstH2I | RGCGCY | 1 cut(s) | 40 |
| BstHHI | GCGC | 1 cut(s) | 39 |
| BstKTI | GATC | 2 cut(s) | 15, 618 |
| BstMAI | GTCTC | 1 cut(s) | 463 |
| BstMBI | GATC | 2 cut(s) | 12, 615 |
| BstMCI | CGRYCG | 1 cut(s) | 56 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 338, 347, 368 |
| BstNI | CCWGG | 4 cut(s) | 18, 130, 278, 302 |
| BstSCI | CCNGG | 4 cut(s) | 16, 128, 276, 300 |
| BstV1I | GCAGC | 1 cut(s) | 111 |
| BstV2I | GAAGAC | 2 cut(s) | 444, 647 |
| BstZI | CGGCCG | 1 cut(s) | 53 |
| Bsu15I | ATCGAT | 1 cut(s) | 696 |
| BsuRI | GGCC | 2 cut(s) | 55, 75 |
| BsuTUI | ATCGAT | 1 cut(s) | 696 |
| BtgZI | GCGATG | 1 cut(s) | 641 |
| BtrI | CACGTC | 1 cut(s) | 307 |
| BtsCI | GGATG | 4 cut(s) | 133, 381, 409, 660 |
| BveI | ACCTGC | 1 cut(s) | 39 |
| Cac8I | GCNNGC | 2 cut(s) | 254, 324 |
| CaiI | CAGNNNCTG | 1 cut(s) | 31 |
| CfoI | GCGC | 1 cut(s) | 39 |
| Cfr10I | RCCGGY | 3 cut(s) | 51, 71, 113 |
| ClaI | ATCGAT | 1 cut(s) | 696 |
| Csp6I | GTAC | 1 cut(s) | 418 |
| CspAI | ACCGGT | 1 cut(s) | 113 |
| CviAII | CATG | 1 cut(s) | 708 |
| CviQI | GTAC | 1 cut(s) | 418 |
| DdeI | CTNAG | 3 cut(s) | 173, 355, 681 |
| DinI | GGCGCC | 1 cut(s) | 38 |
| DpnI | GATC | 2 cut(s) | 14, 617 |
| DpnII | GATC | 2 cut(s) | 12, 615 |
| EaeI | YGGCCR | 2 cut(s) | 53, 73 |
| EagI | CGGCCG | 1 cut(s) | 53 |
| EciI | GGCGGA | 1 cut(s) | 239 |
| EclXI | CGGCCG | 1 cut(s) | 53 |
| Eco31I | GGTCTC | 1 cut(s) | 463 |
| Eco32I | GATATC | 2 cut(s) | 227, 247 |
| Eco52I | CGGCCG | 1 cut(s) | 53 |
| EcoRII | CCWGG | 4 cut(s) | 16, 128, 276, 300 |
| EcoRV | GATATC | 2 cut(s) | 227, 247 |
| EgeI | GGCGCC | 1 cut(s) | 38 |
| EheI | GGCGCC | 1 cut(s) | 38 |
| FaeI | CATG | 1 cut(s) | 711 |
| FaiI | YATR | 7 cut(s) | 90, 284, 399, 401, 428, 525, 709 |
| FatI | CATG | 1 cut(s) | 707 |
| FauI | CCCGC | 1 cut(s) | 177 |
| FauNDI | CATATG | 1 cut(s) | 399 |
| Fnu4HI | GCNGC | 2 cut(s) | 35, 100 |
| FokI | GGATG | 4 cut(s) | 120, 368, 416, 647 |
| Fsp4HI | GCNGC | 2 cut(s) | 35, 100 |
| FspBI | CTAG | 3 cut(s) | 297, 444, 509 |
| GlaI | GCGC | 1 cut(s) | 38 |
| GluI | GCNGC | 2 cut(s) | 35, 100 |
| GsuI | CTGGAG | 1 cut(s) | 398 |
| HaeII | RGCGCY | 1 cut(s) | 40 |
| HaeIII | GGCC | 2 cut(s) | 55, 75 |
| HapII | CCGG | 5 cut(s) | 52, 56, 72, 79, 114 |
| HhaI | GCGC | 1 cut(s) | 39 |
| Hin1I | GRCGYC | 1 cut(s) | 37 |
| Hin1II | CATG | 1 cut(s) | 711 |
| Hin6I | GCGC | 1 cut(s) | 37 |
| HinP1I | GCGC | 1 cut(s) | 37 |
| HincII | GTYRAC | 1 cut(s) | 312 |
| HindII | GTYRAC | 1 cut(s) | 312 |
| HindIII | AAGCTT | 1 cut(s) | 330 |
| HinfI | GANTC | 8 cut(s) | 21, 273, 286, 391, 407, 491, 643, 693 |
| HpaI | GTTAAC | 1 cut(s) | 312 |
| HpaII | CCGG | 5 cut(s) | 52, 56, 72, 79, 114 |
| HphI | GGTGA | 1 cut(s) | 111 |
| Hpy166II | GTNNAC | 2 cut(s) | 119, 312 |
| Hpy188I | TCNGA | 1 cut(s) | 571 |
| Hpy188III | TCNNGA | 5 cut(s) | 25, 222, 290, 503, 557 |
| Hpy8I | GTNNAC | 2 cut(s) | 119, 312 |
| HpyAV | CCTTC | 1 cut(s) | 664 |
| HpyCH4III | ACNGT | 1 cut(s) | 316 |
| HpyCH4IV | ACGT | 2 cut(s) | 306, 483 |
| HpyCH4V | TGCA | 1 cut(s) | 668 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 338, 347, 368 |
| HpyF3I | CTNAG | 3 cut(s) | 173, 355, 681 |
| HpySE526I | ACGT | 2 cut(s) | 306, 483 |
| Hsp92I | GRCGYC | 1 cut(s) | 37 |
| Hsp92II | CATG | 1 cut(s) | 711 |
| HspAI | GCGC | 1 cut(s) | 37 |
| KasI | GGCGCC | 1 cut(s) | 36 |
| KspAI | GTTAAC | 1 cut(s) | 312 |
| Kzo9I | GATC | 2 cut(s) | 12, 615 |
| LmnI | GCTCC | 3 cut(s) | 90, 205, 417 |
| Lsp1109I | GCAGC | 1 cut(s) | 111 |
| LweI | GCATC | 2 cut(s) | 142, 265 |
| MaeI | CTAG | 3 cut(s) | 297, 444, 509 |
| MaeII | ACGT | 2 cut(s) | 306, 483 |
| MaeIII | GTNAC | 3 cut(s) | 176, 488, 700 |
| MalI | GATC | 2 cut(s) | 14, 617 |
| MboI | GATC | 2 cut(s) | 12, 615 |
| MboII | GAAGA | 5 cut(s) | 58, 117, 446, 449, 652 |
| MluCI | AATT | 4 cut(s) | 138, 149, 188, 599 |
| Mly113I | GGCGCC | 1 cut(s) | 37 |
| MlyI | GAGTC | 4 cut(s) | 30, 385, 485, 637 |
| MnlI | CCTC | 2 cut(s) | 352, 539 |
| MroXI | GAANNNNTTC | 1 cut(s) | 576 |
| MseI | TTAA | 3 cut(s) | 311, 585, 593 |
| MslI | CAYNNNNRTG | 2 cut(s) | 386, 402 |
| MspA1I | CMGCKG | 1 cut(s) | 172 |
| MspI | CCGG | 5 cut(s) | 52, 56, 72, 79, 114 |
| MspR9I | CCNGG | 4 cut(s) | 18, 130, 278, 302 |
| MvaI | CCWGG | 4 cut(s) | 18, 130, 278, 302 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 338, 347, 368 |
| NarI | GGCGCC | 1 cut(s) | 37 |
| NdeI | CATATG | 1 cut(s) | 399 |
| NdeII | GATC | 2 cut(s) | 12, 615 |
| NlaIII | CATG | 1 cut(s) | 711 |
| NlaIV | GGNNCC | 1 cut(s) | 38 |
| NmuCI | GTSAC | 1 cut(s) | 488 |
| PdmI | GAANNNNTTC | 1 cut(s) | 576 |
| PfeI | GAWTC | 4 cut(s) | 273, 286, 407, 693 |
| PfoI | TCCNGGA | 1 cut(s) | 276 |
| PinAI | ACCGGT | 1 cut(s) | 113 |
| PkrI | GCNGC | 2 cut(s) | 36, 101 |
| PleI | GAGTC | 4 cut(s) | 29, 385, 485, 637 |
| PluTI | GGCGCC | 1 cut(s) | 40 |
| PpsI | GAGTC | 4 cut(s) | 29, 385, 485, 637 |
| Psp6I | CCWGG | 4 cut(s) | 16, 128, 276, 300 |
| PspGI | CCWGG | 4 cut(s) | 16, 128, 276, 300 |
| PspN4I | GGNNCC | 1 cut(s) | 38 |
| PstNI | CAGNNNCTG | 1 cut(s) | 31 |
| RsaI | GTAC | 1 cut(s) | 419 |
| RsaNI | GTAC | 1 cut(s) | 418 |
| RseI | CAYNNNNRTG | 2 cut(s) | 386, 402 |
| SaqAI | TTAA | 3 cut(s) | 311, 585, 593 |
| SatI | GCNGC | 2 cut(s) | 35, 100 |
| Sau3AI | GATC | 2 cut(s) | 12, 615 |
| SchI | GAGTC | 4 cut(s) | 30, 385, 485, 637 |
| ScrFI | CCNGG | 4 cut(s) | 18, 130, 278, 302 |
| SfaNI | GCATC | 2 cut(s) | 142, 265 |
| SfoI | GGCGCC | 1 cut(s) | 38 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 386, 402 |
| SmlI | CTYRAG | 3 cut(s) | 260, 290, 327 |
| SmoI | CTYRAG | 3 cut(s) | 260, 290, 327 |
| Sse9I | AATT | 4 cut(s) | 138, 149, 188, 599 |
| SsiI | CCGC | 4 cut(s) | 34, 170, 250, 532 |
| SspDI | GGCGCC | 1 cut(s) | 36 |
| SspI | AATATT | 2 cut(s) | 107, 165 |
| SspMI | CTAG | 3 cut(s) | 297, 444, 509 |
| StyD4I | CCNGG | 4 cut(s) | 16, 128, 276, 300 |
| TaaI | ACNGT | 1 cut(s) | 316 |
| TaiI | ACGT | 2 cut(s) | 309, 486 |
| TaqI | TCGA | 4 cut(s) | 11, 465, 691, 696 |
| TasI | AATT | 4 cut(s) | 138, 149, 188, 599 |
| TatI | WGTACW | 1 cut(s) | 417 |
| TauI | GCSGC | 1 cut(s) | 37 |
| TfiI | GAWTC | 4 cut(s) | 273, 286, 407, 693 |
| Tru1I | TTAA | 3 cut(s) | 311, 585, 593 |
| Tru9I | TTAA | 3 cut(s) | 311, 585, 593 |
| TseFI | GTSAC | 1 cut(s) | 488 |
| TseI | GCWGC | 1 cut(s) | 99 |
| Tsp45I | GTSAC | 1 cut(s) | 488 |
| TspDTI | ATGAA | 3 cut(s) | 17, 443, 447 |
| TspGWI | ACGGA | 1 cut(s) | 476 |
| XapI | RAATTY | 2 cut(s) | 149, 599 |
| XmnI | GAANNNNTTC | 1 cut(s) | 576 |
| XspI | CTAG | 3 cut(s) | 297, 444, 509 |