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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 419 |
| AciI | CCGC | 2 cut(s) | 106, 558 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 420 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 22 |
| AgsI | TTSAA | 2 cut(s) | 121, 457 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 4 cut(s) | 307, 317, 539, 590 |
| AluI | AGCT | 4 cut(s) | 307, 317, 539, 590 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 541 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 366 |
| AoxI | GGCC | 1 cut(s) | 406 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 422 |
| AsuHPI | GGTGA | 1 cut(s) | 547 |
| BalI | TGGCCA | 1 cut(s) | 408 |
| BanI | GGYRCC | 1 cut(s) | 419 |
| BanII | GRGCYC | 2 cut(s) | 309, 541 |
| BauI | CACGAG | 1 cut(s) | 540 |
| BbsI | GAAGAC | 3 cut(s) | 18, 48, 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 541 |
| BccI | CCATC | 2 cut(s) | 87, 447 |
| BceAI | ACGGC | 1 cut(s) | 294 |
| BclI | TGATCA | 1 cut(s) | 517 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 2 cut(s) | 83, 622 |
| BfoI | RGCGCY | 1 cut(s) | 423 |
| BmiI | GGNNCC | 1 cut(s) | 421 |
| BpiI | GAAGAC | 3 cut(s) | 18, 48, 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 420 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 537, 567 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 22 |
| Bse3DI | GCAATG | 1 cut(s) | 403 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 22 |
| BseMI | GCAATG | 1 cut(s) | 403 |
| BshFI | GGCC | 1 cut(s) | 408 |
| BshNI | GGYRCC | 1 cut(s) | 419 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 541 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 22 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsnI | GGCC | 1 cut(s) | 408 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 2 cut(s) | 309, 541 |
| Bsp143I | GATC | 5 cut(s) | 189, 371, 517, 606, 618 |
| BspACI | CCGC | 2 cut(s) | 106, 558 |
| BspANI | GGCC | 1 cut(s) | 408 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 1 cut(s) | 421 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspT107I | GGYRCC | 1 cut(s) | 419 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 1 cut(s) | 403 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 5 cut(s) | 189, 371, 517, 606, 618 |
| BssNI | GRCGYC | 1 cut(s) | 420 |
| BssSI | CACGAG | 1 cut(s) | 540 |
| Bst2BI | CACGAG | 1 cut(s) | 540 |
| Bst4CI | ACNGT | 1 cut(s) | 250 |
| Bst6I | CTCTTC | 1 cut(s) | 381 |
| BstACI | GRCGYC | 1 cut(s) | 420 |
| BstC8I | GCNNGC | 1 cut(s) | 71 |
| BstDEI | CTNAG | 2 cut(s) | 255, 432 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 1 cut(s) | 423 |
| BstHHI | GCGC | 1 cut(s) | 422 |
| BstKTI | GATC | 5 cut(s) | 192, 374, 520, 609, 621 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 5 cut(s) | 189, 371, 517, 606, 618 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 458, 566, 587 |
| BstV2I | GAAGAC | 3 cut(s) | 18, 48, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 416 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 408 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 1 cut(s) | 71 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 422 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 458 |
| CviAII | CATG | 5 cut(s) | 62, 302, 338, 410, 521 |
| CviJI | RGCY | 6 cut(s) | 102, 307, 317, 408, 539, 590 |
| CviKI_1 | RGCY | 6 cut(s) | 102, 307, 317, 408, 539, 590 |
| DdeI | CTNAG | 2 cut(s) | 255, 432 |
| DinI | GGCGCC | 1 cut(s) | 421 |
| DpnI | GATC | 5 cut(s) | 191, 373, 519, 608, 620 |
| DpnII | GATC | 5 cut(s) | 189, 371, 517, 606, 618 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Eam1104I | CTCTTC | 1 cut(s) | 381 |
| EarI | CTCTTC | 1 cut(s) | 381 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 539 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 541 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 539 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 539 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 541 |
| EgeI | GGCGCC | 1 cut(s) | 421 |
| EheI | GGCGCC | 1 cut(s) | 421 |
| FaeI | CATG | 5 cut(s) | 65, 305, 341, 413, 524 |
| FatI | CATG | 5 cut(s) | 61, 301, 337, 409, 520 |
| FbaI | TGATCA | 1 cut(s) | 517 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 2 cut(s) | 309, 541 |
| FspBI | CTAG | 2 cut(s) | 83, 622 |
| GlaI | GCGC | 1 cut(s) | 421 |
| HaeII | RGCGCY | 1 cut(s) | 423 |
| HaeIII | GGCC | 1 cut(s) | 408 |
| HgaI | GACGC | 1 cut(s) | 458 |
| HhaI | GCGC | 1 cut(s) | 422 |
| Hin1I | GRCGYC | 1 cut(s) | 420 |
| Hin1II | CATG | 5 cut(s) | 65, 305, 341, 413, 524 |
| Hin6I | GCGC | 1 cut(s) | 420 |
| HinP1I | GCGC | 1 cut(s) | 420 |
| HinfI | GANTC | 1 cut(s) | 217 |
| HphI | GGTGA | 1 cut(s) | 547 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 517 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 131, 302, 501, 610 |
| HpyCH4III | ACNGT | 1 cut(s) | 250 |
| HpyCH4IV | ACGT | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 524 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 458, 566, 587 |
| HpyF3I | CTNAG | 2 cut(s) | 255, 432 |
| HpySE526I | ACGT | 1 cut(s) | 57 |
| Hsp92I | GRCGYC | 1 cut(s) | 420 |
| Hsp92II | CATG | 5 cut(s) | 65, 305, 341, 413, 524 |
| HspAI | GCGC | 1 cut(s) | 420 |
| KasI | GGCGCC | 1 cut(s) | 419 |
| Ksp22I | TGATCA | 1 cut(s) | 517 |
| Kzo9I | GATC | 5 cut(s) | 189, 371, 517, 606, 618 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 4 cut(s) | 83, 90, 246, 390 |
| MaeI | CTAG | 2 cut(s) | 83, 622 |
| MaeII | ACGT | 1 cut(s) | 57 |
| MaeIII | GTNAC | 2 cut(s) | 274, 553 |
| MalI | GATC | 5 cut(s) | 191, 373, 519, 608, 620 |
| MboI | GATC | 5 cut(s) | 189, 371, 517, 606, 618 |
| MboII | GAAGA | 7 cut(s) | 20, 23, 53, 226, 367, 398, 616 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 2 cut(s) | 309, 541 |
| MlsI | TGGCCA | 1 cut(s) | 408 |
| MluCI | AATT | 4 cut(s) | 173, 288, 364, 549 |
| MluNI | TGGCCA | 1 cut(s) | 408 |
| Mly113I | GGCGCC | 1 cut(s) | 420 |
| MlyI | GAGTC | 1 cut(s) | 211 |
| MnlI | CCTC | 5 cut(s) | 113, 382, 386, 412, 474 |
| Mox20I | TGGCCA | 1 cut(s) | 408 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 408 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 3 cut(s) | 350, 414, 444 |
| Msp20I | TGGCCA | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 458, 566, 587 |
| NarI | GGCGCC | 1 cut(s) | 420 |
| NdeII | GATC | 5 cut(s) | 189, 371, 517, 606, 618 |
| NlaIII | CATG | 5 cut(s) | 65, 305, 341, 413, 524 |
| NlaIV | GGNNCC | 1 cut(s) | 421 |
| NmuCI | GTSAC | 2 cut(s) | 274, 553 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PleI | GAGTC | 1 cut(s) | 211 |
| PluTI | GGCGCC | 1 cut(s) | 423 |
| PpsI | GAGTC | 1 cut(s) | 211 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 541 |
| PspN4I | GGNNCC | 1 cut(s) | 421 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 3 cut(s) | 350, 414, 444 |
| SacI | GAGCTC | 2 cut(s) | 309, 541 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 5 cut(s) | 189, 371, 517, 606, 618 |
| SchI | GAGTC | 1 cut(s) | 211 |
| SduI | GDGCHC | 2 cut(s) | 309, 541 |
| SetI | ASST | 8 cut(s) | 60, 84, 299, 309, 319, 466, 541, 592 |
| SfoI | GGCGCC | 1 cut(s) | 421 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 350, 414, 444 |
| Sse9I | AATT | 4 cut(s) | 173, 288, 364, 549 |
| SsiI | CCGC | 2 cut(s) | 106, 558 |
| SspDI | GGCGCC | 1 cut(s) | 419 |
| SspMI | CTAG | 2 cut(s) | 83, 622 |
| SstI | GAGCTC | 2 cut(s) | 309, 541 |
| TaaI | ACNGT | 1 cut(s) | 250 |
| TaiI | ACGT | 1 cut(s) | 60 |
| TaqI | TCGA | 3 cut(s) | 39, 270, 502 |
| TasI | AATT | 4 cut(s) | 173, 288, 364, 549 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 2 cut(s) | 274, 553 |
| Tsp45I | GTSAC | 2 cut(s) | 274, 553 |
| TspDTI | ATGAA | 2 cut(s) | 290, 335 |
| TspGWI | ACGGA | 1 cut(s) | 364 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 83, 622 |