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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 753 |
| AccII | CGCG | 3 cut(s) | 199, 263, 693 |
| AciI | CCGC | 1 cut(s) | 385 |
| AclWI | GGATC | 3 cut(s) | 160, 172, 173 |
| AcsI | RAATTY | 1 cut(s) | 452 |
| AcuI | CTGAAG | 1 cut(s) | 444 |
| AcyI | GRCGYC | 1 cut(s) | 869 |
| AfaI | GTAC | 4 cut(s) | 175, 278, 408, 1000 |
| AfeI | AGCGCT | 1 cut(s) | 900 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 127, 286, 775 |
| AflIII | ACRYGT | 1 cut(s) | 823 |
| AgsI | TTSAA | 1 cut(s) | 400 |
| AjnI | CCWGG | 2 cut(s) | 742, 963 |
| AluBI | AGCT | 4 cut(s) | 87, 224, 586, 608 |
| AluI | AGCT | 4 cut(s) | 87, 224, 586, 608 |
| Alw26I | GTCTC | 3 cut(s) | 95, 836, 952 |
| AlwI | GGATC | 3 cut(s) | 160, 172, 173 |
| Ama87I | CYCGRG | 1 cut(s) | 317 |
| Aor51HI | AGCGCT | 1 cut(s) | 900 |
| ApeKI | GCWGC | 1 cut(s) | 322 |
| ApoI | RAATTY | 1 cut(s) | 452 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 662, 694 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 429 |
| AspLEI | GCGC | 6 cut(s) | 113, 201, 265, 695, 901, 912 |
| AspS9I | GGNCC | 2 cut(s) | 130, 755 |
| AsuHPI | GGTGA | 1 cut(s) | 877 |
| AvaI | CYCGRG | 1 cut(s) | 317 |
| AvaII | GGWCC | 2 cut(s) | 130, 755 |
| BamHI | GGATCC | 1 cut(s) | 165 |
| BbsI | GAAGAC | 3 cut(s) | 297, 500, 883 |
| BbvI | GCAGC | 1 cut(s) | 334 |
| BccI | CCATC | 5 cut(s) | 155, 239, 366, 442, 1063 |
| BciT130I | CCWGG | 2 cut(s) | 744, 965 |
| BciVI | GTATCC | 1 cut(s) | 110 |
| BcoDI | GTCTC | 3 cut(s) | 95, 836, 952 |
| BfaI | CTAG | 4 cut(s) | 98, 561, 648, 732 |
| BfoI | RGCGCY | 2 cut(s) | 902, 913 |
| BfuI | GTATCC | 1 cut(s) | 110 |
| BisI | GCNGC | 1 cut(s) | 323 |
| BlsI | GCNGC | 1 cut(s) | 324 |
| Bme1390I | CCNGG | 2 cut(s) | 744, 965 |
| Bme18I | GGWCC | 2 cut(s) | 130, 755 |
| BmeT110I | CYCGRG | 1 cut(s) | 317 |
| BmgT120I | GGNCC | 2 cut(s) | 130, 755 |
| BmiI | GGNNCC | 4 cut(s) | 131, 167, 809, 926 |
| BmrFI | CCNGG | 2 cut(s) | 744, 965 |
| BmrI | ACTGGG | 1 cut(s) | 990 |
| BmsI | GCATC | 4 cut(s) | 157, 576, 930, 1000 |
| BmuI | ACTGGG | 1 cut(s) | 990 |
| BpiI | GAAGAC | 3 cut(s) | 297, 500, 883 |
| BsaBI | GATNNNNATC | 4 cut(s) | 485, 551, 1073, 1079 |
| BsaHI | GRCGYC | 1 cut(s) | 869 |
| BsaI | GGTCTC | 1 cut(s) | 836 |
| BsaJI | CCNNGG | 2 cut(s) | 699, 811 |
| BsaWI | WCCGGW | 1 cut(s) | 853 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 835, 865 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 127, 286, 775 |
| Bse118I | RCCGGY | 1 cut(s) | 107 |
| Bse1I | ACTGG | 2 cut(s) | 653, 996 |
| Bse8I | GATNNNNATC | 4 cut(s) | 485, 551, 1073, 1079 |
| BseBI | CCWGG | 2 cut(s) | 744, 965 |
| BseDI | CCNNGG | 2 cut(s) | 699, 811 |
| BseGI | GGATG | 1 cut(s) | 991 |
| BseJI | GATNNNNATC | 4 cut(s) | 485, 551, 1073, 1079 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 127, 286, 775 |
| BseMII | CTCAG | 2 cut(s) | 161, 963 |
| BseNI | ACTGG | 2 cut(s) | 653, 996 |
| BseXI | GCAGC | 1 cut(s) | 334 |
| Bsh1236I | CGCG | 3 cut(s) | 199, 263, 693 |
| BsiHKCI | CYCGRG | 1 cut(s) | 317 |
| BsiSI | CCGG | 3 cut(s) | 108, 674, 854 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 127, 286, 775 |
| BsmAI | GTCTC | 3 cut(s) | 95, 836, 952 |
| Bso31I | GGTCTC | 1 cut(s) | 836 |
| BsoBI | CYCGRG | 1 cut(s) | 317 |
| Bsp143I | GATC | 5 cut(s) | 165, 177, 486, 916, 1074 |
| BspACI | CCGC | 1 cut(s) | 385 |
| BspCNI | CTCAG | 2 cut(s) | 162, 962 |
| BspFNI | CGCG | 3 cut(s) | 199, 263, 693 |
| BspHI | TCATGA | 3 cut(s) | 240, 580, 1026 |
| BspLI | GGNNCC | 4 cut(s) | 131, 167, 809, 926 |
| BspPI | GGATC | 3 cut(s) | 160, 172, 173 |
| BspTNI | GGTCTC | 1 cut(s) | 836 |
| BsrFI | RCCGGY | 1 cut(s) | 107 |
| BsrI | ACTGG | 2 cut(s) | 653, 996 |
| BssAI | RCCGGY | 1 cut(s) | 107 |
| BssECI | CCNNGG | 2 cut(s) | 699, 811 |
| BssMI | GATC | 5 cut(s) | 165, 177, 486, 916, 1074 |
| BssNI | GRCGYC | 1 cut(s) | 869 |
| BssT1I | CCWWGG | 1 cut(s) | 699 |
| Bst2UI | CCWGG | 2 cut(s) | 744, 965 |
| Bst4CI | ACNGT | 3 cut(s) | 41, 812, 889 |
| Bst6I | CTCTTC | 1 cut(s) | 824 |
| BstACI | GRCGYC | 1 cut(s) | 869 |
| BstC8I | GCNNGC | 2 cut(s) | 146, 801 |
| BstDEI | CTNAG | 5 cut(s) | 170, 361, 663, 726, 949 |
| BstDSI | CCRYGG | 1 cut(s) | 811 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 284 |
| BstF5I | GGATG | 1 cut(s) | 991 |
| BstFNI | CGCG | 3 cut(s) | 199, 263, 693 |
| BstH2I | RGCGCY | 2 cut(s) | 902, 913 |
| BstHHI | GCGC | 6 cut(s) | 113, 201, 265, 695, 901, 912 |
| BstKTI | GATC | 5 cut(s) | 168, 180, 489, 919, 1077 |
| BstMAI | GTCTC | 3 cut(s) | 95, 836, 952 |
| BstMBI | GATC | 5 cut(s) | 165, 177, 486, 916, 1074 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 221, 907, 988, 1039 |
| BstNI | CCWGG | 2 cut(s) | 744, 965 |
| BstSCI | CCNGG | 2 cut(s) | 742, 963 |
| BstUI | CGCG | 3 cut(s) | 199, 263, 693 |
| BstV1I | GCAGC | 1 cut(s) | 334 |
| BstV2I | GAAGAC | 3 cut(s) | 297, 500, 883 |
| BstX2I | RGATCY | 1 cut(s) | 165 |
| BstYI | RGATCY | 1 cut(s) | 165 |
| BsuI | GTATCC | 1 cut(s) | 110 |
| BtgI | CCRYGG | 1 cut(s) | 811 |
| BtsCI | GGATG | 1 cut(s) | 991 |
| BtsIMutI | CAGTG | 1 cut(s) | 660 |
| Cac8I | GCNNGC | 2 cut(s) | 146, 801 |
| CciI | TCATGA | 3 cut(s) | 240, 580, 1026 |
| CfoI | GCGC | 6 cut(s) | 113, 201, 265, 695, 901, 912 |
| Cfr10I | RCCGGY | 1 cut(s) | 107 |
| Cfr13I | GGNCC | 2 cut(s) | 130, 755 |
| CseI | GACGC | 5 cut(s) | 205, 269, 573, 717, 877 |
| Csp6I | GTAC | 4 cut(s) | 174, 277, 407, 999 |
| CviAII | CATG | 6 cut(s) | 241, 253, 581, 804, 1027, 1050 |
| CviQI | GTAC | 4 cut(s) | 174, 277, 407, 999 |
| DdeI | CTNAG | 5 cut(s) | 170, 361, 663, 726, 949 |
| DpnI | GATC | 5 cut(s) | 167, 179, 488, 918, 1076 |
| DpnII | GATC | 5 cut(s) | 165, 177, 486, 916, 1074 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 753 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 753 |
| Eam1104I | CTCTTC | 1 cut(s) | 824 |
| EarI | CTCTTC | 1 cut(s) | 824 |
| Eco130I | CCWWGG | 1 cut(s) | 699 |
| Eco31I | GGTCTC | 1 cut(s) | 836 |
| Eco32I | GATATC | 1 cut(s) | 553 |
| Eco47I | GGWCC | 2 cut(s) | 130, 755 |
| Eco47III | AGCGCT | 1 cut(s) | 900 |
| Eco57I | CTGAAG | 1 cut(s) | 444 |
| Eco88I | CYCGRG | 1 cut(s) | 317 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 284 |
| EcoRI | GAATTC | 1 cut(s) | 452 |
| EcoRII | CCWGG | 2 cut(s) | 742, 963 |
| EcoRV | GATATC | 1 cut(s) | 553 |
| EcoT14I | CCWWGG | 1 cut(s) | 699 |
| EcoT22I | ATGCAT | 1 cut(s) | 523 |
| ErhI | CCWWGG | 1 cut(s) | 699 |
| FaeI | CATG | 6 cut(s) | 244, 256, 584, 807, 1030, 1053 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 71, 103 |
| FatI | CATG | 6 cut(s) | 240, 252, 580, 803, 1026, 1049 |
| Fnu4HI | GCNGC | 1 cut(s) | 323 |
| FokI | GGATG | 1 cut(s) | 978 |
| Fsp4HI | GCNGC | 1 cut(s) | 323 |
| FspBI | CTAG | 4 cut(s) | 98, 561, 648, 732 |
| GlaI | GCGC | 6 cut(s) | 112, 200, 264, 694, 900, 911 |
| GluI | GCNGC | 1 cut(s) | 323 |
| HaeII | RGCGCY | 2 cut(s) | 902, 913 |
| HapII | CCGG | 3 cut(s) | 108, 674, 854 |
| HgaI | GACGC | 5 cut(s) | 205, 269, 573, 717, 877 |
| HhaI | GCGC | 6 cut(s) | 113, 201, 265, 695, 901, 912 |
| Hin1I | GRCGYC | 1 cut(s) | 869 |
| Hin1II | CATG | 6 cut(s) | 244, 256, 584, 807, 1030, 1053 |
| Hin6I | GCGC | 6 cut(s) | 111, 199, 263, 693, 899, 910 |
| HinP1I | GCGC | 6 cut(s) | 111, 199, 263, 693, 899, 910 |
| HinfI | GANTC | 3 cut(s) | 344, 496, 677 |
| HpaII | CCGG | 3 cut(s) | 108, 674, 854 |
| HphI | GGTGA | 1 cut(s) | 877 |
| Hpy166II | GTNNAC | 3 cut(s) | 461, 821, 958 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 424, 546, 952 |
| Hpy188III | TCNNGA | 7 cut(s) | 169, 241, 356, 490, 581, 648, 1027 |
| Hpy8I | GTNNAC | 3 cut(s) | 461, 821, 958 |
| HpyAV | CCTTC | 2 cut(s) | 517, 773 |
| HpyCH4III | ACNGT | 3 cut(s) | 41, 812, 889 |
| HpyCH4IV | ACGT | 4 cut(s) | 336, 748, 823, 1001 |
| HpyCH4V | TGCA | 3 cut(s) | 521, 803, 1006 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 221, 907, 988, 1039 |
| HpyF3I | CTNAG | 5 cut(s) | 170, 361, 663, 726, 949 |
| HpySE526I | ACGT | 4 cut(s) | 336, 748, 823, 1001 |
| Hsp92I | GRCGYC | 1 cut(s) | 869 |
| Hsp92II | CATG | 6 cut(s) | 244, 256, 584, 807, 1030, 1053 |
| HspAI | GCGC | 6 cut(s) | 111, 199, 263, 693, 899, 910 |
| Kzo9I | GATC | 5 cut(s) | 165, 177, 486, 916, 1074 |
| LmnI | GCTCC | 3 cut(s) | 32, 270, 906 |
| Lsp1109I | GCAGC | 1 cut(s) | 334 |
| LweI | GCATC | 4 cut(s) | 157, 576, 930, 1000 |
| MaeI | CTAG | 4 cut(s) | 98, 561, 648, 732 |
| MaeII | ACGT | 4 cut(s) | 336, 748, 823, 1001 |
| MaeIII | GTNAC | 2 cut(s) | 68, 865 |
| MalI | GATC | 5 cut(s) | 167, 179, 488, 918, 1076 |
| MboI | GATC | 5 cut(s) | 165, 177, 486, 916, 1074 |
| MboII | GAAGA | 6 cut(s) | 302, 505, 646, 841, 883, 1072 |
| MflI | RGATCY | 1 cut(s) | 165 |
| MluCI | AATT | 5 cut(s) | 418, 452, 588, 682, 1044 |
| MlyI | GAGTC | 2 cut(s) | 490, 686 |
| Mph1103I | ATGCAT | 1 cut(s) | 523 |
| MroXI | GAANNNNTTC | 1 cut(s) | 429 |
| MseI | TTAA | 1 cut(s) | 1065 |
| MslI | CAYNNNNRTG | 4 cut(s) | 239, 255, 629, 938 |
| MspI | CCGG | 3 cut(s) | 108, 674, 854 |
| MspR9I | CCNGG | 2 cut(s) | 744, 965 |
| MvaI | CCWGG | 2 cut(s) | 744, 965 |
| MvnI | CGCG | 3 cut(s) | 199, 263, 693 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 221, 907, 988, 1039 |
| NdeII | GATC | 5 cut(s) | 165, 177, 486, 916, 1074 |
| NlaIII | CATG | 6 cut(s) | 244, 256, 584, 807, 1030, 1053 |
| NlaIV | GGNNCC | 4 cut(s) | 131, 167, 809, 926 |
| NmuCI | GTSAC | 1 cut(s) | 865 |
| NsiI | ATGCAT | 1 cut(s) | 523 |
| PaeR7I | CTCGAG | 1 cut(s) | 317 |
| PagI | TCATGA | 3 cut(s) | 240, 580, 1026 |
| PdmI | GAANNNNTTC | 1 cut(s) | 429 |
| PfeI | GAWTC | 1 cut(s) | 344 |
| PfoI | TCCNGGA | 1 cut(s) | 742 |
| PkrI | GCNGC | 1 cut(s) | 324 |
| PleI | GAGTC | 2 cut(s) | 490, 685 |
| PpsI | GAGTC | 2 cut(s) | 490, 685 |
| Psp6I | CCWGG | 2 cut(s) | 742, 963 |
| PspGI | CCWGG | 2 cut(s) | 742, 963 |
| PspN4I | GGNNCC | 4 cut(s) | 131, 167, 809, 926 |
| PspPI | GGNCC | 2 cut(s) | 130, 755 |
| PspXI | VCTCGAGB | 1 cut(s) | 317 |
| PsuI | RGATCY | 1 cut(s) | 165 |
| RsaI | GTAC | 4 cut(s) | 175, 278, 408, 1000 |
| RsaNI | GTAC | 4 cut(s) | 174, 277, 407, 999 |
| RseI | CAYNNNNRTG | 4 cut(s) | 239, 255, 629, 938 |
| SaqAI | TTAA | 1 cut(s) | 1065 |
| SatI | GCNGC | 1 cut(s) | 323 |
| Sau3AI | GATC | 5 cut(s) | 165, 177, 486, 916, 1074 |
| Sau96I | GGNCC | 2 cut(s) | 130, 755 |
| SchI | GAGTC | 2 cut(s) | 490, 686 |
| ScrFI | CCNGG | 2 cut(s) | 744, 965 |
| SfaNI | GCATC | 4 cut(s) | 157, 576, 930, 1000 |
| Sfr274I | CTCGAG | 1 cut(s) | 317 |
| SinI | GGWCC | 2 cut(s) | 130, 755 |
| SlaI | CTCGAG | 1 cut(s) | 317 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 239, 255, 629, 938 |
| SmlI | CTYRAG | 1 cut(s) | 317 |
| SmoI | CTYRAG | 1 cut(s) | 317 |
| Sse9I | AATT | 5 cut(s) | 418, 452, 588, 682, 1044 |
| SsiI | CCGC | 1 cut(s) | 385 |
| SspMI | CTAG | 4 cut(s) | 98, 561, 648, 732 |
| StyD4I | CCNGG | 2 cut(s) | 742, 963 |
| StyI | CCWWGG | 1 cut(s) | 699 |
| TaaI | ACNGT | 3 cut(s) | 41, 812, 889 |
| TaiI | ACGT | 4 cut(s) | 339, 751, 826, 1004 |
| TaqI | TCGA | 3 cut(s) | 318, 489, 915 |
| TasI | AATT | 5 cut(s) | 418, 452, 588, 682, 1044 |
| TatI | WGTACW | 1 cut(s) | 406 |
| TfiI | GAWTC | 1 cut(s) | 344 |
| Tru1I | TTAA | 1 cut(s) | 1065 |
| Tru9I | TTAA | 1 cut(s) | 1065 |
| TscAI | CASTG | 1 cut(s) | 660 |
| TseFI | GTSAC | 1 cut(s) | 865 |
| TseI | GCWGC | 1 cut(s) | 322 |
| Tsp45I | GTSAC | 1 cut(s) | 865 |
| TspDTI | ATGAA | 6 cut(s) | 234, 269, 569, 614, 883, 1043 |
| TspGWI | ACGGA | 2 cut(s) | 122, 329 |
| TspRI | CASTG | 1 cut(s) | 660 |
| VpaK11BI | GGWCC | 2 cut(s) | 130, 755 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 284 |
| XapI | RAATTY | 1 cut(s) | 452 |
| XbaI | TCTAGA | 1 cut(s) | 647 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 303 |
| XhoI | CTCGAG | 1 cut(s) | 317 |
| XmnI | GAANNNNTTC | 1 cut(s) | 429 |
| XspI | CTAG | 4 cut(s) | 98, 561, 648, 732 |
| Zsp2I | ATGCAT | 1 cut(s) | 523 |