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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 78 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 189 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 282, 314 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Alw26I | GTCTC | 1 cut(s) | 286 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AspS9I | GGNCC | 1 cut(s) | 94 |
| BbsI | GAAGAC | 1 cut(s) | 267 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 286 |
| BfaI | CTAG | 2 cut(s) | 107, 126 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 94 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 267 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 141 |
| BsaI | GGTCTC | 1 cut(s) | 286 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 189 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 204, 232 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 189 |
| BseMII | CTCAG | 1 cut(s) | 280 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 189 |
| BsmAI | GTCTC | 1 cut(s) | 286 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 286 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 279 |
| BspTNI | GGTCTC | 1 cut(s) | 286 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 297 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 266 |
| BstF5I | GGATG | 2 cut(s) | 204, 232 |
| BstMAI | GTCTC | 1 cut(s) | 286 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 267 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 204, 232 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| Cfr13I | GGNCC | 1 cut(s) | 94 |
| CviAII | CATG | 1 cut(s) | 319 |
| CviJI | RGCY | 8 cut(s) | 48, 95, 124, 129, 155, 161, 182, 200 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 95, 124, 129, 155, 161, 182, 200 |
| DdeI | CTNAG | 2 cut(s) | 184, 266 |
| DraI | TTTAAA | 1 cut(s) | 333 |
| Eco31I | GGTCTC | 1 cut(s) | 286 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| FaeI | CATG | 1 cut(s) | 322 |
| FaiI | YATR | 5 cut(s) | 222, 224, 249, 251, 320 |
| FatI | CATG | 1 cut(s) | 318 |
| FauNDI | CATATG | 1 cut(s) | 222 |
| FblI | GTMKAC | 1 cut(s) | 78 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 191, 239 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 107, 126 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 1 cut(s) | 322 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 115, 167, 214, 230, 314 |
| Hpy166II | GTNNAC | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 1 cut(s) | 269 |
| Hpy188III | TCNNGA | 3 cut(s) | 71, 119, 326 |
| Hpy8I | GTNNAC | 1 cut(s) | 79 |
| HpyAV | CCTTC | 1 cut(s) | 264 |
| HpyCH4III | ACNGT | 1 cut(s) | 297 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 306 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 266 |
| HpySE526I | ACGT | 2 cut(s) | 135, 306 |
| Hsp92II | CATG | 1 cut(s) | 322 |
| LmnI | GCTCC | 1 cut(s) | 240 |
| LpnPI | CCDG | 7 cut(s) | 5, 23, 46, 95, 116, 143, 339 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 107, 126 |
| MaeII | ACGT | 2 cut(s) | 135, 306 |
| MaeIII | GTNAC | 2 cut(s) | 5, 311 |
| MboII | GAAGA | 3 cut(s) | 269, 272, 302 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MluCI | AATT | 3 cut(s) | 42, 141, 239 |
| MlyI | GAGTC | 2 cut(s) | 208, 308 |
| MnlI | CCTC | 2 cut(s) | 181, 275 |
| MseI | TTAA | 1 cut(s) | 332 |
| MslI | CAYNNNNRTG | 2 cut(s) | 209, 225 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 222 |
| NlaIII | CATG | 1 cut(s) | 322 |
| NmuCI | GTSAC | 1 cut(s) | 311 |
| PfeI | GAWTC | 3 cut(s) | 115, 167, 230 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 208, 308 |
| PpsI | GAGTC | 2 cut(s) | 208, 308 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspPI | GGNCC | 1 cut(s) | 94 |
| RseI | CAYNNNNRTG | 2 cut(s) | 209, 225 |
| SaqAI | TTAA | 1 cut(s) | 332 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau96I | GGNCC | 1 cut(s) | 94 |
| SchI | GAGTC | 2 cut(s) | 208, 308 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SetI | ASST | 8 cut(s) | 12, 65, 138, 157, 163, 267, 275, 309 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 209, 225 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 3 cut(s) | 42, 141, 239 |
| SspMI | CTAG | 2 cut(s) | 107, 126 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 297 |
| TaiI | ACGT | 2 cut(s) | 138, 309 |
| TaqI | TCGA | 2 cut(s) | 243, 288 |
| TasI | AATT | 3 cut(s) | 42, 141, 239 |
| TfiI | GAWTC | 3 cut(s) | 115, 167, 230 |
| Tru1I | TTAA | 1 cut(s) | 332 |
| Tru9I | TTAA | 1 cut(s) | 332 |
| TseFI | GTSAC | 1 cut(s) | 311 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 311 |
| TspDTI | ATGAA | 2 cut(s) | 266, 270 |
| TspGWI | ACGGA | 1 cut(s) | 299 |
| XmiI | GTMKAC | 1 cut(s) | 78 |
| XspI | CTAG | 2 cut(s) | 107, 126 |