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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 165 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| AccB1I | GGYRCC | 1 cut(s) | 341 |
| AccIII | TCCGGA | 1 cut(s) | 421 |
| AciI | CCGC | 3 cut(s) | 133, 535, 591 |
| AclWI | GGATC | 1 cut(s) | 669 |
| AcoI | YGGCCR | 1 cut(s) | 601 |
| AcyI | GRCGYC | 1 cut(s) | 342 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 523 |
| AgsI | TTSAA | 2 cut(s) | 62, 282 |
| AjiI | CACGTC | 1 cut(s) | 10 |
| AleI | CACNNNNGTG | 1 cut(s) | 18 |
| AluBI | AGCT | 4 cut(s) | 52, 176, 334, 356 |
| AluI | AGCT | 4 cut(s) | 52, 176, 334, 356 |
| Alw21I | GWGCWC | 2 cut(s) | 15, 336 |
| Alw26I | GTCTC | 1 cut(s) | 268 |
| Alw44I | GTGCAC | 1 cut(s) | 11 |
| AlwI | GGATC | 1 cut(s) | 669 |
| Aor13HI | TCCGGA | 1 cut(s) | 421 |
| AoxI | GGCC | 1 cut(s) | 601 |
| ApaLI | GTGCAC | 1 cut(s) | 11 |
| ApeKI | GCWGC | 1 cut(s) | 70 |
| AspLEI | GCGC | 1 cut(s) | 344 |
| AspS9I | GGNCC | 2 cut(s) | 503, 633 |
| AsuHPI | GGTGA | 1 cut(s) | 623 |
| AvaII | GGWCC | 2 cut(s) | 503, 633 |
| BaeGI | GKGCMC | 1 cut(s) | 15 |
| BanI | GGYRCC | 1 cut(s) | 341 |
| BanII | GRGCYC | 1 cut(s) | 336 |
| BbsI | GAAGAC | 3 cut(s) | 45, 248, 643 |
| Bbv12I | GWGCWC | 2 cut(s) | 15, 336 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 2 cut(s) | 114, 521 |
| BcoDI | GTCTC | 1 cut(s) | 268 |
| BfaI | CTAG | 1 cut(s) | 396 |
| BfmI | CTRYAG | 1 cut(s) | 433 |
| BfoI | RGCGCY | 1 cut(s) | 345 |
| BisI | GCNGC | 1 cut(s) | 71 |
| BlsI | GCNGC | 1 cut(s) | 72 |
| Bme18I | GGWCC | 2 cut(s) | 503, 633 |
| BmgBI | CACGTC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 2 cut(s) | 503, 633 |
| BmiI | GGNNCC | 3 cut(s) | 343, 595, 634 |
| BpiI | GAAGAC | 3 cut(s) | 45, 248, 643 |
| BpuEI | CTTGAG | 2 cut(s) | 86, 443 |
| BsaBI | GATNNNNATC | 2 cut(s) | 233, 660 |
| BsaHI | GRCGYC | 1 cut(s) | 342 |
| BsaJI | CCNNGG | 3 cut(s) | 447, 559, 604 |
| BsaWI | WCCGGW | 1 cut(s) | 421 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 34, 452, 523 |
| Bse3DI | GCAATG | 2 cut(s) | 88, 634 |
| Bse8I | GATNNNNATC | 2 cut(s) | 233, 660 |
| BseAI | TCCGGA | 1 cut(s) | 421 |
| BseDI | CCNNGG | 3 cut(s) | 447, 559, 604 |
| BseGI | GGATG | 1 cut(s) | 532 |
| BseJI | GATNNNNATC | 2 cut(s) | 233, 660 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 523 |
| BseMI | GCAATG | 2 cut(s) | 88, 634 |
| BseMII | CTCAG | 1 cut(s) | 348 |
| BseSI | GKGCMC | 1 cut(s) | 15 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| BshFI | GGCC | 1 cut(s) | 603 |
| BshNI | GGYRCC | 1 cut(s) | 341 |
| BsiHKAI | GWGCWC | 2 cut(s) | 15, 336 |
| BsiSI | CCGG | 2 cut(s) | 422, 600 |
| BslFI | GGGAC | 1 cut(s) | 646 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 34, 452, 523 |
| BsmAI | GTCTC | 1 cut(s) | 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 1 cut(s) | 646 |
| BsnI | GGCC | 1 cut(s) | 603 |
| Bsp1286I | GDGCHC | 2 cut(s) | 15, 336 |
| Bsp13I | TCCGGA | 1 cut(s) | 421 |
| Bsp143I | GATC | 2 cut(s) | 234, 661 |
| Bsp19I | CCATGG | 1 cut(s) | 604 |
| BspACI | CCGC | 3 cut(s) | 133, 535, 591 |
| BspANI | GGCC | 1 cut(s) | 603 |
| BspCNI | CTCAG | 1 cut(s) | 349 |
| BspEI | TCCGGA | 1 cut(s) | 421 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 3 cut(s) | 343, 595, 634 |
| BspPI | GGATC | 1 cut(s) | 669 |
| BspQI | GCTCTTC | 1 cut(s) | 183 |
| BspT107I | GGYRCC | 1 cut(s) | 341 |
| BsrDI | GCAATG | 2 cut(s) | 88, 634 |
| BssECI | CCNNGG | 3 cut(s) | 447, 559, 604 |
| BssMI | GATC | 2 cut(s) | 234, 661 |
| BssNI | GRCGYC | 1 cut(s) | 342 |
| BssT1I | CCWWGG | 2 cut(s) | 447, 604 |
| Bst4CI | ACNGT | 1 cut(s) | 560 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstACI | GRCGYC | 1 cut(s) | 342 |
| BstDEI | CTNAG | 2 cut(s) | 357, 474 |
| BstDSI | CCRYGG | 2 cut(s) | 559, 604 |
| BstEII | GGTNACC | 1 cut(s) | 611 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 32 |
| BstF5I | GGATG | 1 cut(s) | 532 |
| BstH2I | RGCGCY | 1 cut(s) | 345 |
| BstHHI | GCGC | 1 cut(s) | 344 |
| BstKTI | GATC | 2 cut(s) | 237, 664 |
| BstMAI | GTCTC | 1 cut(s) | 268 |
| BstMBI | GATC | 2 cut(s) | 234, 661 |
| BstPI | GGTNACC | 1 cut(s) | 611 |
| BstSFI | CTRYAG | 1 cut(s) | 433 |
| BstSLI | GKGCMC | 1 cut(s) | 15 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BstV2I | GAAGAC | 3 cut(s) | 45, 248, 643 |
| BsuRI | GGCC | 1 cut(s) | 603 |
| BtgI | CCRYGG | 2 cut(s) | 559, 604 |
| BtrI | CACGTC | 1 cut(s) | 10 |
| BtsCI | GGATG | 1 cut(s) | 532 |
| BtsIMutI | CAGTG | 1 cut(s) | 551 |
| CciI | TCATGA | 1 cut(s) | 328 |
| CfoI | GCGC | 1 cut(s) | 344 |
| Cfr13I | GGNCC | 2 cut(s) | 503, 633 |
| CviAII | CATG | 3 cut(s) | 329, 346, 605 |
| CviJI | RGCY | 8 cut(s) | 52, 129, 176, 334, 356, 596, 603, 672 |
| CviKI_1 | RGCY | 8 cut(s) | 52, 129, 176, 334, 356, 596, 603, 672 |
| DdeI | CTNAG | 2 cut(s) | 357, 474 |
| DinI | GGCGCC | 1 cut(s) | 343 |
| DpnI | GATC | 2 cut(s) | 236, 663 |
| DpnII | GATC | 2 cut(s) | 234, 661 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| EaeI | YGGCCR | 1 cut(s) | 601 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| EciI | GGCGGA | 1 cut(s) | 606 |
| Ecl136II | GAGCTC | 1 cut(s) | 334 |
| Eco130I | CCWWGG | 2 cut(s) | 447, 604 |
| Eco24I | GRGCYC | 1 cut(s) | 336 |
| Eco47I | GGWCC | 2 cut(s) | 503, 633 |
| Eco53kI | GAGCTC | 1 cut(s) | 334 |
| Eco91I | GGTNACC | 1 cut(s) | 611 |
| EcoICRI | GAGCTC | 1 cut(s) | 334 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 32 |
| EcoO65I | GGTNACC | 1 cut(s) | 611 |
| EcoT14I | CCWWGG | 2 cut(s) | 447, 604 |
| EcoT38I | GRGCYC | 1 cut(s) | 336 |
| EgeI | GGCGCC | 1 cut(s) | 343 |
| EheI | GGCGCC | 1 cut(s) | 343 |
| ErhI | CCWWGG | 2 cut(s) | 447, 604 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 3 cut(s) | 332, 349, 608 |
| FaqI | GGGAC | 1 cut(s) | 646 |
| FatI | CATG | 3 cut(s) | 328, 345, 604 |
| Fnu4HI | GCNGC | 1 cut(s) | 71 |
| FokI | GGATG | 1 cut(s) | 539 |
| FriOI | GRGCYC | 1 cut(s) | 336 |
| Fsp4HI | GCNGC | 1 cut(s) | 71 |
| FspBI | CTAG | 1 cut(s) | 396 |
| GlaI | GCGC | 1 cut(s) | 343 |
| GluI | GCNGC | 1 cut(s) | 71 |
| HaeII | RGCGCY | 1 cut(s) | 345 |
| HaeIII | GGCC | 1 cut(s) | 603 |
| HapII | CCGG | 2 cut(s) | 422, 600 |
| HhaI | GCGC | 1 cut(s) | 344 |
| Hin1I | GRCGYC | 1 cut(s) | 342 |
| Hin1II | CATG | 3 cut(s) | 332, 349, 608 |
| Hin6I | GCGC | 1 cut(s) | 342 |
| HinP1I | GCGC | 1 cut(s) | 342 |
| HinfI | GANTC | 4 cut(s) | 92, 244, 425, 456 |
| HpaII | CCGG | 2 cut(s) | 422, 600 |
| HphI | GGTGA | 1 cut(s) | 623 |
| Hpy166II | GTNNAC | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 1 cut(s) | 294 |
| Hpy188III | TCNNGA | 6 cut(s) | 89, 104, 238, 329, 422, 492 |
| Hpy8I | GTNNAC | 1 cut(s) | 13 |
| HpyAV | CCTTC | 1 cut(s) | 265 |
| HpyCH4III | ACNGT | 1 cut(s) | 560 |
| HpyCH4IV | ACGT | 4 cut(s) | 9, 313, 351, 496 |
| HpyCH4V | TGCA | 1 cut(s) | 13 |
| HpyF3I | CTNAG | 2 cut(s) | 357, 474 |
| HpySE526I | ACGT | 4 cut(s) | 9, 313, 351, 496 |
| Hsp92I | GRCGYC | 1 cut(s) | 342 |
| Hsp92II | CATG | 3 cut(s) | 332, 349, 608 |
| HspAI | GCGC | 1 cut(s) | 342 |
| KasI | GGCGCC | 1 cut(s) | 341 |
| Kpn2I | TCCGGA | 1 cut(s) | 421 |
| Kzo9I | GATC | 2 cut(s) | 234, 661 |
| LguI | GCTCTTC | 1 cut(s) | 183 |
| LmnI | GCTCC | 1 cut(s) | 593 |
| LpnPI | CCDG | 8 cut(s) | 110, 117, 284, 350, 435, 477, 486, 613 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| MaeI | CTAG | 1 cut(s) | 396 |
| MaeII | ACGT | 4 cut(s) | 9, 313, 351, 496 |
| MaeIII | GTNAC | 2 cut(s) | 89, 611 |
| MalI | GATC | 2 cut(s) | 236, 663 |
| MboI | GATC | 2 cut(s) | 234, 661 |
| MboII | GAAGA | 4 cut(s) | 50, 170, 253, 643 |
| MhlI | GDGCHC | 2 cut(s) | 15, 336 |
| MluCI | AATT | 2 cut(s) | 286, 487 |
| Mly113I | GGCGCC | 1 cut(s) | 342 |
| MlyI | GAGTC | 4 cut(s) | 86, 238, 434, 450 |
| MnlI | CCTC | 9 cut(s) | 28, 38, 140, 189, 446, 517, 557, 581, 607 |
| MroI | TCCGGA | 1 cut(s) | 421 |
| MslI | CAYNNNNRTG | 3 cut(s) | 18, 609, 641 |
| MspI | CCGG | 2 cut(s) | 422, 600 |
| NarI | GGCGCC | 1 cut(s) | 342 |
| NcoI | CCATGG | 1 cut(s) | 604 |
| NdeII | GATC | 2 cut(s) | 234, 661 |
| NlaIII | CATG | 3 cut(s) | 332, 349, 608 |
| NlaIV | GGNNCC | 3 cut(s) | 343, 595, 634 |
| NmeAIII | GCCGAG | 1 cut(s) | 648 |
| NmuCI | GTSAC | 2 cut(s) | 89, 611 |
| OliI | CACNNNNGTG | 1 cut(s) | 18 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PciSI | GCTCTTC | 1 cut(s) | 183 |
| PkrI | GCNGC | 1 cut(s) | 72 |
| PleI | GAGTC | 4 cut(s) | 86, 238, 433, 450 |
| PluTI | GGCGCC | 1 cut(s) | 345 |
| PpsI | GAGTC | 4 cut(s) | 86, 238, 433, 450 |
| PsiI | TTATAA | 1 cut(s) | 165 |
| Psp124BI | GAGCTC | 1 cut(s) | 336 |
| PspEI | GGTNACC | 1 cut(s) | 611 |
| PspN4I | GGNNCC | 3 cut(s) | 343, 595, 634 |
| PspPI | GGNCC | 2 cut(s) | 503, 633 |
| RseI | CAYNNNNRTG | 3 cut(s) | 18, 609, 641 |
| SacI | GAGCTC | 1 cut(s) | 336 |
| SapI | GCTCTTC | 1 cut(s) | 183 |
| SatI | GCNGC | 1 cut(s) | 71 |
| Sau3AI | GATC | 2 cut(s) | 234, 661 |
| Sau96I | GGNCC | 2 cut(s) | 503, 633 |
| SchI | GAGTC | 4 cut(s) | 86, 238, 434, 450 |
| SduI | GDGCHC | 2 cut(s) | 15, 336 |
| SfcI | CTRYAG | 1 cut(s) | 433 |
| SfoI | GGCGCC | 1 cut(s) | 343 |
| SinI | GGWCC | 2 cut(s) | 503, 633 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 18, 609, 641 |
| SmlI | CTYRAG | 2 cut(s) | 65, 458 |
| SmoI | CTYRAG | 2 cut(s) | 65, 458 |
| Sse9I | AATT | 2 cut(s) | 286, 487 |
| SsiI | CCGC | 3 cut(s) | 133, 535, 591 |
| SspDI | GGCGCC | 1 cut(s) | 341 |
| SspMI | CTAG | 1 cut(s) | 396 |
| SstI | GAGCTC | 1 cut(s) | 336 |
| StyI | CCWWGG | 2 cut(s) | 447, 604 |
| TaaI | ACNGT | 1 cut(s) | 560 |
| TaiI | ACGT | 4 cut(s) | 12, 316, 354, 499 |
| TaqI | TCGA | 2 cut(s) | 237, 654 |
| TasI | AATT | 2 cut(s) | 286, 487 |
| TscAI | CASTG | 1 cut(s) | 558 |
| TseFI | GTSAC | 2 cut(s) | 89, 611 |
| TseI | GCWGC | 1 cut(s) | 70 |
| Tsp45I | GTSAC | 2 cut(s) | 89, 611 |
| TspDTI | ATGAA | 4 cut(s) | 17, 317, 362, 395 |
| TspRI | CASTG | 1 cut(s) | 558 |
| VneI | GTGCAC | 1 cut(s) | 11 |
| VpaK11BI | GGWCC | 2 cut(s) | 503, 633 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 32 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 51 |
| XspI | CTAG | 1 cut(s) | 396 |