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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 447 |
| AccB1I | GGYRCC | 1 cut(s) | 590 |
| AciI | CCGC | 1 cut(s) | 731 |
| AclI | AACGTT | 1 cut(s) | 380 |
| AclWI | GGATC | 2 cut(s) | 380, 450 |
| AcoI | YGGCCR | 1 cut(s) | 577 |
| AcsI | RAATTY | 1 cut(s) | 257 |
| AcyI | GRCGYC | 1 cut(s) | 591 |
| AdeI | CACNNNGTG | 1 cut(s) | 771 |
| AfaI | GTAC | 1 cut(s) | 77 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 509, 692 |
| AgsI | TTSAA | 3 cut(s) | 205, 627, 637 |
| AleI | CACNNNNGTG | 1 cut(s) | 195 |
| AluBI | AGCT | 7 cut(s) | 391, 401, 472, 523, 622, 712, 763 |
| AluI | AGCT | 7 cut(s) | 391, 401, 472, 523, 622, 712, 763 |
| Alw21I | GWGCWC | 2 cut(s) | 393, 714 |
| Alw26I | GTCTC | 2 cut(s) | 121, 325 |
| AlwI | GGATC | 2 cut(s) | 380, 450 |
| AoxI | GGCC | 1 cut(s) | 577 |
| ApoI | RAATTY | 1 cut(s) | 257 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 234 |
| AspLEI | GCGC | 1 cut(s) | 593 |
| AsuHPI | GGTGA | 1 cut(s) | 720 |
| AxyI | CCTNAGG | 1 cut(s) | 44 |
| BaeGI | GKGCMC | 2 cut(s) | 502, 699 |
| BalI | TGGCCA | 1 cut(s) | 579 |
| BanI | GGYRCC | 1 cut(s) | 590 |
| BanII | GRGCYC | 3 cut(s) | 393, 516, 714 |
| BauI | CACGAG | 1 cut(s) | 713 |
| BbsI | GAAGAC | 3 cut(s) | 14, 102, 305 |
| Bbv12I | GWGCWC | 2 cut(s) | 393, 714 |
| BccI | CCATC | 3 cut(s) | 171, 325, 618 |
| BciVI | GTATCC | 1 cut(s) | 693 |
| BcoDI | GTCTC | 2 cut(s) | 121, 325 |
| BfaI | CTAG | 1 cut(s) | 799 |
| BfmI | CTRYAG | 2 cut(s) | 262, 363 |
| BfoI | RGCGCY | 1 cut(s) | 594 |
| BfuI | GTATCC | 1 cut(s) | 693 |
| BmiI | GGNNCC | 3 cut(s) | 515, 533, 592 |
| BpiI | GAAGAC | 3 cut(s) | 14, 102, 305 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| Bpu10I | CCTNAGC | 1 cut(s) | 387 |
| BsaHI | GRCGYC | 1 cut(s) | 591 |
| BsaI | GGTCTC | 1 cut(s) | 121 |
| BsaJI | CCNNGG | 1 cut(s) | 459 |
| BsaWI | WCCGGW | 1 cut(s) | 685 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 509, 692 |
| Bse1I | ACTGG | 1 cut(s) | 73 |
| Bse21I | CCTNAGG | 1 cut(s) | 44 |
| BseDI | CCNNGG | 1 cut(s) | 459 |
| BseGI | GGATG | 2 cut(s) | 67, 429 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 509, 692 |
| BseMII | CTCAG | 2 cut(s) | 378, 641 |
| BseNI | ACTGG | 1 cut(s) | 73 |
| BseSI | GKGCMC | 2 cut(s) | 502, 699 |
| BshFI | GGCC | 1 cut(s) | 579 |
| BshNI | GGYRCC | 1 cut(s) | 590 |
| BsiHKAI | GWGCWC | 2 cut(s) | 393, 714 |
| BsiSI | CCGG | 1 cut(s) | 686 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 509, 692 |
| BsmAI | GTCTC | 2 cut(s) | 121, 325 |
| BsmBI | CGTCTC | 1 cut(s) | 325 |
| BsnI | GGCC | 1 cut(s) | 579 |
| Bso31I | GGTCTC | 1 cut(s) | 121 |
| Bsp1286I | GDGCHC | 5 cut(s) | 393, 502, 516, 699, 714 |
| Bsp143I | GATC | 5 cut(s) | 273, 372, 455, 783, 795 |
| BspACI | CCGC | 1 cut(s) | 731 |
| BspANI | GGCC | 1 cut(s) | 579 |
| BspCNI | CTCAG | 2 cut(s) | 379, 642 |
| BspLI | GGNNCC | 3 cut(s) | 515, 533, 592 |
| BspMAI | CTGCAG | 1 cut(s) | 367 |
| BspPI | GGATC | 2 cut(s) | 380, 450 |
| BspT107I | GGYRCC | 1 cut(s) | 590 |
| BspTNI | GGTCTC | 1 cut(s) | 121 |
| BsrI | ACTGG | 1 cut(s) | 73 |
| BssECI | CCNNGG | 1 cut(s) | 459 |
| BssMI | GATC | 5 cut(s) | 273, 372, 455, 783, 795 |
| BssNI | GRCGYC | 1 cut(s) | 591 |
| BssSI | CACGAG | 1 cut(s) | 713 |
| Bst2BI | CACGAG | 1 cut(s) | 713 |
| BstACI | GRCGYC | 1 cut(s) | 591 |
| BstDEI | CTNAG | 6 cut(s) | 44, 339, 387, 504, 603, 650 |
| BstDSI | CCRYGG | 1 cut(s) | 459 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 507 |
| BstF5I | GGATG | 2 cut(s) | 67, 429 |
| BstH2I | RGCGCY | 1 cut(s) | 594 |
| BstHHI | GCGC | 1 cut(s) | 593 |
| BstKTI | GATC | 5 cut(s) | 276, 375, 458, 786, 798 |
| BstMAI | GTCTC | 2 cut(s) | 121, 325 |
| BstMBI | GATC | 5 cut(s) | 273, 372, 455, 783, 795 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 26, 520, 628, 739, 760 |
| BstSFI | CTRYAG | 2 cut(s) | 262, 363 |
| BstSLI | GKGCMC | 2 cut(s) | 502, 699 |
| BstV2I | GAAGAC | 3 cut(s) | 14, 102, 305 |
| BstX2I | RGATCY | 1 cut(s) | 455 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 587 |
| BstYI | RGATCY | 1 cut(s) | 455 |
| Bsu36I | CCTNAGG | 1 cut(s) | 44 |
| BsuI | GTATCC | 1 cut(s) | 693 |
| BsuRI | GGCC | 1 cut(s) | 579 |
| BtgI | CCRYGG | 1 cut(s) | 459 |
| BtgZI | GCGATG | 1 cut(s) | 299 |
| BtsCI | GGATG | 2 cut(s) | 67, 429 |
| CfoI | GCGC | 1 cut(s) | 593 |
| Csp6I | GTAC | 1 cut(s) | 76 |
| CviAII | CATG | 3 cut(s) | 356, 422, 581 |
| CviQI | GTAC | 1 cut(s) | 76 |
| DdeI | CTNAG | 6 cut(s) | 44, 339, 387, 504, 603, 650 |
| DinI | GGCGCC | 1 cut(s) | 592 |
| DpnI | GATC | 5 cut(s) | 275, 374, 457, 785, 797 |
| DpnII | GATC | 5 cut(s) | 273, 372, 455, 783, 795 |
| DraIII | CACNNNGTG | 1 cut(s) | 771 |
| EaeI | YGGCCR | 1 cut(s) | 577 |
| Ecl136II | GAGCTC | 2 cut(s) | 391, 712 |
| Eco24I | GRGCYC | 3 cut(s) | 393, 516, 714 |
| Eco31I | GGTCTC | 1 cut(s) | 121 |
| Eco53kI | GAGCTC | 2 cut(s) | 391, 712 |
| Eco81I | CCTNAGG | 1 cut(s) | 44 |
| EcoICRI | GAGCTC | 2 cut(s) | 391, 712 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 507 |
| EcoRI | GAATTC | 1 cut(s) | 257 |
| EcoT38I | GRGCYC | 3 cut(s) | 393, 516, 714 |
| EgeI | GGCGCC | 1 cut(s) | 592 |
| EheI | GGCGCC | 1 cut(s) | 592 |
| Esp3I | CGTCTC | 1 cut(s) | 325 |
| FaeI | CATG | 3 cut(s) | 359, 425, 584 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 290, 322 |
| FatI | CATG | 3 cut(s) | 355, 421, 580 |
| FauNDI | CATATG | 1 cut(s) | 57 |
| FokI | GGATG | 2 cut(s) | 74, 416 |
| FriOI | GRGCYC | 3 cut(s) | 393, 516, 714 |
| FspBI | CTAG | 1 cut(s) | 799 |
| GlaI | GCGC | 1 cut(s) | 592 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeII | RGCGCY | 1 cut(s) | 594 |
| HaeIII | GGCC | 1 cut(s) | 579 |
| HapII | CCGG | 1 cut(s) | 686 |
| HhaI | GCGC | 1 cut(s) | 593 |
| Hin1I | GRCGYC | 1 cut(s) | 591 |
| Hin1II | CATG | 3 cut(s) | 359, 425, 584 |
| Hin6I | GCGC | 1 cut(s) | 591 |
| HinP1I | GCGC | 1 cut(s) | 591 |
| HinfI | GANTC | 7 cut(s) | 49, 65, 149, 301, 351, 633, 646 |
| HpaII | CCGG | 1 cut(s) | 686 |
| HphI | GGTGA | 1 cut(s) | 720 |
| Hpy188I | TCNGA | 3 cut(s) | 229, 480, 651 |
| Hpy188III | TCNNGA | 7 cut(s) | 161, 215, 386, 453, 671, 715, 787 |
| HpyAV | CCTTC | 2 cut(s) | 99, 322 |
| HpyCH4IV | ACGT | 2 cut(s) | 141, 380 |
| HpyCH4V | TGCA | 3 cut(s) | 326, 365, 551 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 26, 520, 628, 739, 760 |
| HpyF3I | CTNAG | 6 cut(s) | 44, 339, 387, 504, 603, 650 |
| HpySE526I | ACGT | 2 cut(s) | 141, 380 |
| Hsp92I | GRCGYC | 1 cut(s) | 591 |
| Hsp92II | CATG | 3 cut(s) | 359, 425, 584 |
| HspAI | GCGC | 1 cut(s) | 591 |
| KasI | GGCGCC | 1 cut(s) | 590 |
| Kzo9I | GATC | 5 cut(s) | 273, 372, 455, 783, 795 |
| LmnI | GCTCC | 3 cut(s) | 75, 398, 519 |
| LpnPI | CCDG | 9 cut(s) | 27, 86, 115, 167, 174, 351, 399, 561, 699 |
| MaeI | CTAG | 1 cut(s) | 799 |
| MaeII | ACGT | 2 cut(s) | 141, 380 |
| MaeIII | GTNAC | 4 cut(s) | 146, 334, 358, 726 |
| MalI | GATC | 5 cut(s) | 275, 374, 457, 785, 797 |
| MboI | GATC | 5 cut(s) | 273, 372, 455, 783, 795 |
| MboII | GAAGA | 7 cut(s) | 16, 19, 104, 107, 310, 730, 793 |
| MflI | RGATCY | 1 cut(s) | 455 |
| MhlI | GDGCHC | 5 cut(s) | 393, 502, 516, 699, 714 |
| MlsI | TGGCCA | 1 cut(s) | 579 |
| MluCI | AATT | 5 cut(s) | 257, 442, 448, 487, 722 |
| MluNI | TGGCCA | 1 cut(s) | 579 |
| Mly113I | GGCGCC | 1 cut(s) | 591 |
| MlyI | GAGTC | 4 cut(s) | 43, 143, 295, 655 |
| MnlI | CCTC | 6 cut(s) | 197, 503, 533, 553, 557, 583 |
| Mox20I | TGGCCA | 1 cut(s) | 579 |
| MroXI | GAANNNNTTC | 1 cut(s) | 234 |
| MscI | TGGCCA | 1 cut(s) | 579 |
| MseI | TTAA | 2 cut(s) | 243, 251 |
| MslI | CAYNNNNRTG | 5 cut(s) | 60, 195, 434, 585, 615 |
| Msp20I | TGGCCA | 1 cut(s) | 579 |
| MspI | CCGG | 1 cut(s) | 686 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 26, 520, 628, 739, 760 |
| NarI | GGCGCC | 1 cut(s) | 591 |
| NdeI | CATATG | 1 cut(s) | 57 |
| NdeII | GATC | 5 cut(s) | 273, 372, 455, 783, 795 |
| NlaIII | CATG | 3 cut(s) | 359, 425, 584 |
| NlaIV | GGNNCC | 3 cut(s) | 515, 533, 592 |
| NmuCI | GTSAC | 2 cut(s) | 146, 726 |
| OliI | CACNNNNGTG | 1 cut(s) | 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 234 |
| PfeI | GAWTC | 3 cut(s) | 65, 351, 633 |
| PleI | GAGTC | 4 cut(s) | 43, 143, 295, 654 |
| PluTI | GGCGCC | 1 cut(s) | 594 |
| PpsI | GAGTC | 4 cut(s) | 43, 143, 295, 654 |
| PsiI | TTATAA | 1 cut(s) | 447 |
| Psp124BI | GAGCTC | 2 cut(s) | 393, 714 |
| Psp1406I | AACGTT | 1 cut(s) | 380 |
| PspN4I | GGNNCC | 3 cut(s) | 515, 533, 592 |
| PstI | CTGCAG | 1 cut(s) | 367 |
| PsuI | RGATCY | 1 cut(s) | 455 |
| RsaI | GTAC | 1 cut(s) | 77 |
| RsaNI | GTAC | 1 cut(s) | 76 |
| RseI | CAYNNNNRTG | 5 cut(s) | 60, 195, 434, 585, 615 |
| SacI | GAGCTC | 2 cut(s) | 393, 714 |
| SaqAI | TTAA | 2 cut(s) | 243, 251 |
| Sau3AI | GATC | 5 cut(s) | 273, 372, 455, 783, 795 |
| SchI | GAGTC | 4 cut(s) | 43, 143, 295, 655 |
| SduI | GDGCHC | 5 cut(s) | 393, 502, 516, 699, 714 |
| SfcI | CTRYAG | 2 cut(s) | 262, 363 |
| SfoI | GGCGCC | 1 cut(s) | 592 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 60, 195, 434, 585, 615 |
| Sse9I | AATT | 5 cut(s) | 257, 442, 448, 487, 722 |
| SsiI | CCGC | 1 cut(s) | 731 |
| SspDI | GGCGCC | 1 cut(s) | 590 |
| SspMI | CTAG | 1 cut(s) | 799 |
| SstI | GAGCTC | 2 cut(s) | 393, 714 |
| TaiI | ACGT | 2 cut(s) | 144, 383 |
| TaqI | TCGA | 3 cut(s) | 349, 452, 672 |
| TasI | AATT | 5 cut(s) | 257, 442, 448, 487, 722 |
| TatI | WGTACW | 1 cut(s) | 75 |
| TfiI | GAWTC | 3 cut(s) | 65, 351, 633 |
| Tru1I | TTAA | 2 cut(s) | 243, 251 |
| Tru9I | TTAA | 2 cut(s) | 243, 251 |
| TseFI | GTSAC | 2 cut(s) | 146, 726 |
| Tsp45I | GTSAC | 2 cut(s) | 146, 726 |
| TspDTI | ATGAA | 4 cut(s) | 17, 101, 105, 419 |
| TspGWI | ACGGA | 4 cut(s) | 134, 385, 448, 544 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 507 |
| XapI | RAATTY | 1 cut(s) | 257 |
| XmnI | GAANNNNTTC | 1 cut(s) | 234 |
| XspI | CTAG | 1 cut(s) | 799 |