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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 254 |
| AccII | CGCG | 1 cut(s) | 195 |
| AciI | CCGC | 3 cut(s) | 167, 195, 353 |
| AclWI | GGATC | 6 cut(s) | 177, 191, 198, 239, 252, 363 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AfaI | GTAC | 1 cut(s) | 379 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 86, 254, 373, 374 |
| AgsI | TTSAA | 1 cut(s) | 239 |
| AjnI | CCWGG | 1 cut(s) | 94 |
| AluBI | AGCT | 1 cut(s) | 135 |
| AluI | AGCT | 1 cut(s) | 135 |
| Alw21I | GWGCWC | 1 cut(s) | 137 |
| AlwI | GGATC | 6 cut(s) | 177, 191, 198, 239, 252, 363 |
| Ama87I | CYCGRG | 1 cut(s) | 373 |
| AoxI | GGCC | 2 cut(s) | 9, 128 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| AspLEI | GCGC | 1 cut(s) | 67 |
| AsuC2I | CCSGG | 2 cut(s) | 374, 375 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AsuNHI | GCTAGC | 1 cut(s) | 17 |
| AvaI | CYCGRG | 1 cut(s) | 373 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 369, 402 |
| BalI | TGGCCA | 1 cut(s) | 11 |
| BamHI | GGATCC | 1 cut(s) | 244 |
| BanII | GRGCYC | 2 cut(s) | 93, 137 |
| Bbv12I | GWGCWC | 1 cut(s) | 137 |
| BbvI | GCAGC | 1 cut(s) | 37 |
| BccI | CCATC | 6 cut(s) | 212, 224, 263, 343, 391, 396 |
| BceAI | ACGGC | 1 cut(s) | 180 |
| BciT130I | CCWGG | 1 cut(s) | 96 |
| BcnI | CCSGG | 2 cut(s) | 374, 375 |
| BfaI | CTAG | 2 cut(s) | 18, 383 |
| BfoI | RGCGCY | 1 cut(s) | 68 |
| BisI | GCNGC | 1 cut(s) | 51 |
| BlsI | GCNGC | 1 cut(s) | 52 |
| Bme1390I | CCNGG | 3 cut(s) | 96, 374, 375 |
| BmeT110I | CYCGRG | 1 cut(s) | 373 |
| BmiI | GGNNCC | 2 cut(s) | 92, 246 |
| BmrFI | CCNGG | 3 cut(s) | 96, 374, 375 |
| BmsI | GCATC | 2 cut(s) | 91, 219 |
| BmtI | GCTAGC | 1 cut(s) | 21 |
| BpuMI | CCSGG | 2 cut(s) | 374, 375 |
| BsaJI | CCNNGG | 5 cut(s) | 80, 94, 95, 138, 373 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 86, 254, 373, 374 |
| Bse1I | ACTGG | 1 cut(s) | 259 |
| Bse3DI | GCAATG | 1 cut(s) | 12 |
| BseBI | CCWGG | 1 cut(s) | 96 |
| BseDI | CCNNGG | 5 cut(s) | 80, 94, 95, 138, 373 |
| BseGI | GGATG | 3 cut(s) | 106, 399, 407 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 86, 254, 373, 374 |
| BseMI | GCAATG | 1 cut(s) | 12 |
| BseNI | ACTGG | 1 cut(s) | 259 |
| BseXI | GCAGC | 1 cut(s) | 37 |
| Bsh1236I | CGCG | 1 cut(s) | 195 |
| Bsh1285I | CGRYCG | 2 cut(s) | 199, 203 |
| BshFI | GGCC | 2 cut(s) | 11, 130 |
| BsiEI | CGRYCG | 2 cut(s) | 199, 203 |
| BsiHKAI | GWGCWC | 1 cut(s) | 137 |
| BsiHKCI | CYCGRG | 1 cut(s) | 373 |
| BsiSI | CCGG | 2 cut(s) | 341, 374 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 86, 254, 373, 374 |
| BsmI | GAATGC | 1 cut(s) | 258 |
| BsnI | GGCC | 2 cut(s) | 11, 130 |
| BsoBI | CYCGRG | 1 cut(s) | 373 |
| Bsp1286I | GDGCHC | 2 cut(s) | 93, 137 |
| Bsp143I | GATC | 7 cut(s) | 58, 169, 183, 190, 200, 244, 355 |
| BspACI | CCGC | 3 cut(s) | 167, 195, 353 |
| BspANI | GGCC | 2 cut(s) | 11, 130 |
| BspFNI | CGCG | 1 cut(s) | 195 |
| BspLI | GGNNCC | 2 cut(s) | 92, 246 |
| BspOI | GCTAGC | 1 cut(s) | 21 |
| BspPI | GGATC | 6 cut(s) | 177, 191, 198, 239, 252, 363 |
| BsrDI | GCAATG | 1 cut(s) | 12 |
| BsrI | ACTGG | 1 cut(s) | 259 |
| BssECI | CCNNGG | 5 cut(s) | 80, 94, 95, 138, 373 |
| BssMI | GATC | 7 cut(s) | 58, 169, 183, 190, 200, 244, 355 |
| BssT1I | CCWWGG | 2 cut(s) | 80, 138 |
| Bst2UI | CCWGG | 1 cut(s) | 96 |
| BstC8I | GCNNGC | 2 cut(s) | 19, 301 |
| BstF5I | GGATG | 3 cut(s) | 106, 399, 407 |
| BstFNI | CGCG | 1 cut(s) | 195 |
| BstH2I | RGCGCY | 1 cut(s) | 68 |
| BstHHI | GCGC | 1 cut(s) | 67 |
| BstKTI | GATC | 7 cut(s) | 61, 172, 186, 193, 203, 247, 358 |
| BstMBI | GATC | 7 cut(s) | 58, 169, 183, 190, 200, 244, 355 |
| BstMCI | CGRYCG | 2 cut(s) | 199, 203 |
| BstNI | CCWGG | 1 cut(s) | 96 |
| BstNSI | RCATGY | 1 cut(s) | 108 |
| BstSCI | CCNGG | 3 cut(s) | 94, 372, 373 |
| BstUI | CGCG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 1 cut(s) | 37 |
| BstX2I | RGATCY | 3 cut(s) | 183, 244, 355 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 145 |
| BstYI | RGATCY | 3 cut(s) | 183, 244, 355 |
| BsuRI | GGCC | 2 cut(s) | 11, 130 |
| BtsCI | GGATG | 3 cut(s) | 106, 399, 407 |
| Cac8I | GCNNGC | 2 cut(s) | 19, 301 |
| CfoI | GCGC | 1 cut(s) | 67 |
| Cfr9I | CCCGGG | 1 cut(s) | 373 |
| Csp6I | GTAC | 1 cut(s) | 378 |
| CviAII | CATG | 3 cut(s) | 7, 105, 115 |
| CviJI | RGCY | 7 cut(s) | 11, 21, 29, 91, 130, 135, 406 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 21, 29, 91, 130, 135, 406 |
| CviQI | GTAC | 1 cut(s) | 378 |
| DpnI | GATC | 7 cut(s) | 60, 171, 185, 192, 202, 246, 357 |
| DpnII | GATC | 7 cut(s) | 58, 169, 183, 190, 200, 244, 355 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| EciI | GGCGGA | 2 cut(s) | 182, 368 |
| Ecl136II | GAGCTC | 1 cut(s) | 135 |
| Eco130I | CCWWGG | 2 cut(s) | 80, 138 |
| Eco24I | GRGCYC | 2 cut(s) | 93, 137 |
| Eco53kI | GAGCTC | 1 cut(s) | 135 |
| Eco88I | CYCGRG | 1 cut(s) | 373 |
| EcoICRI | GAGCTC | 1 cut(s) | 135 |
| EcoRII | CCWGG | 1 cut(s) | 94 |
| EcoT14I | CCWWGG | 2 cut(s) | 80, 138 |
| EcoT22I | ATGCAT | 1 cut(s) | 106 |
| EcoT38I | GRGCYC | 2 cut(s) | 93, 137 |
| ErhI | CCWWGG | 2 cut(s) | 80, 138 |
| FaeI | CATG | 3 cut(s) | 10, 108, 118 |
| FaiI | YATR | 6 cut(s) | 8, 106, 116, 125, 154, 181 |
| FatI | CATG | 3 cut(s) | 6, 104, 114 |
| Fnu4HI | GCNGC | 1 cut(s) | 51 |
| FokI | GGATG | 2 cut(s) | 113, 406 |
| FriOI | GRGCYC | 2 cut(s) | 93, 137 |
| Fsp4HI | GCNGC | 1 cut(s) | 51 |
| FspBI | CTAG | 2 cut(s) | 18, 383 |
| GlaI | GCGC | 1 cut(s) | 66 |
| GluI | GCNGC | 1 cut(s) | 51 |
| HaeII | RGCGCY | 1 cut(s) | 68 |
| HaeIII | GGCC | 2 cut(s) | 11, 130 |
| HapII | CCGG | 2 cut(s) | 341, 374 |
| HhaI | GCGC | 1 cut(s) | 67 |
| Hin1II | CATG | 3 cut(s) | 10, 108, 118 |
| Hin6I | GCGC | 1 cut(s) | 65 |
| HinP1I | GCGC | 1 cut(s) | 65 |
| HinfI | GANTC | 2 cut(s) | 239, 324 |
| HpaII | CCGG | 2 cut(s) | 341, 374 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 2 cut(s) | 162, 320 |
| Hpy188I | TCNGA | 2 cut(s) | 244, 310 |
| Hpy8I | GTNNAC | 2 cut(s) | 162, 320 |
| Hpy99I | CGWCG | 2 cut(s) | 278, 337 |
| HpyCH4IV | ACGT | 2 cut(s) | 276, 335 |
| HpyCH4V | TGCA | 1 cut(s) | 104 |
| HpySE526I | ACGT | 2 cut(s) | 276, 335 |
| Hsp92II | CATG | 3 cut(s) | 10, 108, 118 |
| HspAI | GCGC | 1 cut(s) | 65 |
| Kzo9I | GATC | 7 cut(s) | 58, 169, 183, 190, 200, 244, 355 |
| LmnI | GCTCC | 2 cut(s) | 96, 140 |
| LpnPI | CCDG | 8 cut(s) | 47, 81, 108, 240, 289, 354, 375, 387 |
| Lsp1109I | GCAGC | 1 cut(s) | 37 |
| LweI | GCATC | 2 cut(s) | 91, 219 |
| MaeI | CTAG | 2 cut(s) | 18, 383 |
| MaeII | ACGT | 2 cut(s) | 276, 335 |
| MalI | GATC | 7 cut(s) | 60, 171, 185, 192, 202, 246, 357 |
| MboI | GATC | 7 cut(s) | 58, 169, 183, 190, 200, 244, 355 |
| MboII | GAAGA | 1 cut(s) | 358 |
| MflI | RGATCY | 3 cut(s) | 183, 244, 355 |
| MhlI | GDGCHC | 2 cut(s) | 93, 137 |
| MlsI | TGGCCA | 1 cut(s) | 11 |
| MluNI | TGGCCA | 1 cut(s) | 11 |
| MnlI | CCTC | 1 cut(s) | 120 |
| Mox20I | TGGCCA | 1 cut(s) | 11 |
| Mph1103I | ATGCAT | 1 cut(s) | 106 |
| MscI | TGGCCA | 1 cut(s) | 11 |
| Msp20I | TGGCCA | 1 cut(s) | 11 |
| MspI | CCGG | 2 cut(s) | 341, 374 |
| MspR9I | CCNGG | 3 cut(s) | 96, 374, 375 |
| Mva1269I | GAATGC | 1 cut(s) | 258 |
| MvaI | CCWGG | 1 cut(s) | 96 |
| MvnI | CGCG | 1 cut(s) | 195 |
| NciI | CCSGG | 2 cut(s) | 374, 375 |
| NdeII | GATC | 7 cut(s) | 58, 169, 183, 190, 200, 244, 355 |
| NheI | GCTAGC | 1 cut(s) | 17 |
| NlaIII | CATG | 3 cut(s) | 10, 108, 118 |
| NlaIV | GGNNCC | 2 cut(s) | 92, 246 |
| NmeAIII | GCCGAG | 1 cut(s) | 156 |
| NsiI | ATGCAT | 1 cut(s) | 106 |
| NspI | RCATGY | 1 cut(s) | 108 |
| PasI | CCCWGGG | 1 cut(s) | 95 |
| PctI | GAATGC | 1 cut(s) | 258 |
| PfeI | GAWTC | 2 cut(s) | 239, 324 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 254 |
| PkrI | GCNGC | 1 cut(s) | 52 |
| Ple19I | CGATCG | 1 cut(s) | 203 |
| Psp124BI | GAGCTC | 1 cut(s) | 137 |
| Psp6I | CCWGG | 1 cut(s) | 94 |
| PspGI | CCWGG | 1 cut(s) | 94 |
| PspN4I | GGNNCC | 2 cut(s) | 92, 246 |
| PsuI | RGATCY | 3 cut(s) | 183, 244, 355 |
| PvuI | CGATCG | 1 cut(s) | 203 |
| RsaI | GTAC | 1 cut(s) | 379 |
| RsaNI | GTAC | 1 cut(s) | 378 |
| SacI | GAGCTC | 1 cut(s) | 137 |
| SatI | GCNGC | 1 cut(s) | 51 |
| Sau3AI | GATC | 7 cut(s) | 58, 169, 183, 190, 200, 244, 355 |
| ScrFI | CCNGG | 3 cut(s) | 96, 374, 375 |
| SduI | GDGCHC | 2 cut(s) | 93, 137 |
| SetI | ASST | 3 cut(s) | 137, 279, 338 |
| SfaNI | GCATC | 2 cut(s) | 91, 219 |
| SmaI | CCCGGG | 1 cut(s) | 375 |
| SsiI | CCGC | 3 cut(s) | 167, 195, 353 |
| SspMI | CTAG | 2 cut(s) | 18, 383 |
| SstI | GAGCTC | 1 cut(s) | 137 |
| StyD4I | CCNGG | 3 cut(s) | 94, 372, 373 |
| StyI | CCWWGG | 2 cut(s) | 80, 138 |
| TaiI | ACGT | 2 cut(s) | 279, 338 |
| TaqI | TCGA | 2 cut(s) | 57, 199 |
| TfiI | GAWTC | 2 cut(s) | 239, 324 |
| TseI | GCWGC | 1 cut(s) | 50 |
| TspMI | CCCGGG | 1 cut(s) | 373 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 254 |
| XceI | RCATGY | 1 cut(s) | 108 |
| XmaI | CCCGGG | 1 cut(s) | 373 |
| XspI | CTAG | 2 cut(s) | 18, 383 |
| Zsp2I | ATGCAT | 1 cut(s) | 106 |