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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| AccB1I | GGYRCC | 1 cut(s) | 456 |
| AccII | CGCG | 1 cut(s) | 441 |
| AciI | CCGC | 2 cut(s) | 133, 535 |
| AclWI | GGATC | 1 cut(s) | 393 |
| AcsI | RAATTY | 1 cut(s) | 243 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 452 |
| AgsI | TTSAA | 3 cut(s) | 148, 359, 423 |
| AjnI | CCWGG | 1 cut(s) | 521 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 2 cut(s) | 344, 516 |
| AluI | AGCT | 2 cut(s) | 344, 516 |
| Alw26I | GTCTC | 2 cut(s) | 64, 268 |
| AlwI | GGATC | 1 cut(s) | 393 |
| ApoI | RAATTY | 1 cut(s) | 243 |
| AseI | ATTAAT | 1 cut(s) | 272 |
| AspLEI | GCGC | 1 cut(s) | 443 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| BanI | GGYRCC | 1 cut(s) | 456 |
| BbsI | GAAGAC | 1 cut(s) | 45 |
| BccI | CCATC | 1 cut(s) | 114 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 287, 321 |
| BciT130I | CCWGG | 1 cut(s) | 523 |
| BciVI | GTATCC | 1 cut(s) | 478 |
| BclI | TGATCA | 1 cut(s) | 315 |
| BcoDI | GTCTC | 2 cut(s) | 64, 268 |
| BfaI | CTAG | 1 cut(s) | 110 |
| BfmI | CTRYAG | 1 cut(s) | 306 |
| BfuI | GTATCC | 1 cut(s) | 478 |
| Bme1390I | CCNGG | 1 cut(s) | 523 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 1 cut(s) | 458 |
| BmrFI | CCNGG | 1 cut(s) | 523 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BpiI | GAAGAC | 1 cut(s) | 45 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 2 cut(s) | 402, 522 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 452 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| BseBI | CCWGG | 1 cut(s) | 523 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseDI | CCNNGG | 2 cut(s) | 402, 522 |
| BseGI | GGATG | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 452 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| BshNI | GGYRCC | 1 cut(s) | 456 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 452 |
| BsmAI | GTCTC | 2 cut(s) | 64, 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp143I | GATC | 3 cut(s) | 216, 315, 398 |
| BspACI | CCGC | 2 cut(s) | 133, 535 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 1 cut(s) | 458 |
| BspMAI | CTGCAG | 1 cut(s) | 310 |
| BspPI | GGATC | 1 cut(s) | 393 |
| BspT107I | GGYRCC | 1 cut(s) | 456 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 2 cut(s) | 402, 522 |
| BssMI | GATC | 3 cut(s) | 216, 315, 398 |
| Bst2UI | CCWGG | 1 cut(s) | 523 |
| BstDEI | CTNAG | 1 cut(s) | 447 |
| BstDSI | CCRYGG | 1 cut(s) | 402 |
| BstEII | GGTNACC | 1 cut(s) | 530 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 1 cut(s) | 372 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstHHI | GCGC | 1 cut(s) | 443 |
| BstKTI | GATC | 3 cut(s) | 219, 318, 401 |
| BstMAI | GTCTC | 2 cut(s) | 64, 268 |
| BstMBI | GATC | 3 cut(s) | 216, 315, 398 |
| BstNI | CCWGG | 1 cut(s) | 523 |
| BstPI | GGTNACC | 1 cut(s) | 530 |
| BstSCI | CCNGG | 1 cut(s) | 521 |
| BstSFI | CTRYAG | 1 cut(s) | 306 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV2I | GAAGAC | 1 cut(s) | 45 |
| BstX2I | RGATCY | 1 cut(s) | 398 |
| BstYI | RGATCY | 1 cut(s) | 398 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuI | GTATCC | 1 cut(s) | 478 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtgI | CCRYGG | 1 cut(s) | 402 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 1 cut(s) | 372 |
| CciI | TCATGA | 1 cut(s) | 328 |
| CfoI | GCGC | 1 cut(s) | 443 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 1 cut(s) | 329 |
| CviJI | RGCY | 4 cut(s) | 52, 129, 344, 516 |
| CviKI_1 | RGCY | 4 cut(s) | 52, 129, 344, 516 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 1 cut(s) | 447 |
| DpnI | GATC | 3 cut(s) | 218, 317, 400 |
| DpnII | GATC | 3 cut(s) | 216, 315, 398 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| Eco91I | GGTNACC | 1 cut(s) | 530 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 450 |
| EcoO65I | GGTNACC | 1 cut(s) | 530 |
| EcoRII | CCWGG | 1 cut(s) | 521 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 1 cut(s) | 332 |
| FatI | CATG | 1 cut(s) | 328 |
| FbaI | TGATCA | 1 cut(s) | 315 |
| FokI | GGATG | 1 cut(s) | 359 |
| FspBI | CTAG | 1 cut(s) | 110 |
| GlaI | GCGC | 1 cut(s) | 442 |
| HhaI | GCGC | 1 cut(s) | 443 |
| Hin1II | CATG | 1 cut(s) | 332 |
| Hin6I | GCGC | 1 cut(s) | 441 |
| HinP1I | GCGC | 1 cut(s) | 441 |
| HinfI | GANTC | 2 cut(s) | 92, 294 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 268 |
| Hpy188III | TCNNGA | 5 cut(s) | 104, 158, 329, 396, 492 |
| HpyAV | CCTTC | 3 cut(s) | 42, 265, 521 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 496 |
| HpyCH4V | TGCA | 1 cut(s) | 308 |
| HpyF3I | CTNAG | 1 cut(s) | 447 |
| HpySE526I | ACGT | 2 cut(s) | 84, 496 |
| Hsp92II | CATG | 1 cut(s) | 332 |
| HspAI | GCGC | 1 cut(s) | 441 |
| Ksp22I | TGATCA | 1 cut(s) | 315 |
| Kzo9I | GATC | 3 cut(s) | 216, 315, 398 |
| LmnI | GCTCC | 1 cut(s) | 18 |
| LpnPI | CCDG | 9 cut(s) | 29, 58, 110, 294, 350, 477, 486, 508, 535 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeI | CTAG | 1 cut(s) | 110 |
| MaeII | ACGT | 2 cut(s) | 84, 496 |
| MaeIII | GTNAC | 3 cut(s) | 89, 301, 530 |
| MalI | GATC | 3 cut(s) | 218, 317, 400 |
| MboI | GATC | 3 cut(s) | 216, 315, 398 |
| MboII | GAAGA | 4 cut(s) | 47, 50, 80, 394 |
| MflI | RGATCY | 1 cut(s) | 398 |
| MluCI | AATT | 5 cut(s) | 200, 243, 269, 391, 430 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MnlI | CCTC | 2 cut(s) | 140, 446 |
| MseI | TTAA | 3 cut(s) | 186, 194, 272 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MspR9I | CCNGG | 1 cut(s) | 523 |
| MvaI | CCWGG | 1 cut(s) | 523 |
| MvnI | CGCG | 1 cut(s) | 441 |
| NdeII | GATC | 3 cut(s) | 216, 315, 398 |
| NlaIII | CATG | 1 cut(s) | 332 |
| NlaIV | GGNNCC | 1 cut(s) | 458 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PfeI | GAWTC | 1 cut(s) | 294 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| PshBI | ATTAAT | 1 cut(s) | 272 |
| Psp6I | CCWGG | 1 cut(s) | 521 |
| PspEI | GGTNACC | 1 cut(s) | 530 |
| PspGI | CCWGG | 1 cut(s) | 521 |
| PspN4I | GGNNCC | 1 cut(s) | 458 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| PstI | CTGCAG | 1 cut(s) | 310 |
| PsuI | RGATCY | 1 cut(s) | 398 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SaqAI | TTAA | 3 cut(s) | 186, 194, 272 |
| Sau3AI | GATC | 3 cut(s) | 216, 315, 398 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SchI | GAGTC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 1 cut(s) | 523 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SfcI | CTRYAG | 1 cut(s) | 306 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| Sse9I | AATT | 5 cut(s) | 200, 243, 269, 391, 430 |
| SsiI | CCGC | 2 cut(s) | 133, 535 |
| SspMI | CTAG | 1 cut(s) | 110 |
| StyD4I | CCNGG | 1 cut(s) | 521 |
| TaiI | ACGT | 2 cut(s) | 87, 499 |
| TaqI | TCGA | 4 cut(s) | 66, 292, 297, 395 |
| TasI | AATT | 5 cut(s) | 200, 243, 269, 391, 430 |
| TfiI | GAWTC | 1 cut(s) | 294 |
| Tru1I | TTAA | 3 cut(s) | 186, 194, 272 |
| Tru9I | TTAA | 3 cut(s) | 186, 194, 272 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 4 cut(s) | 44, 48, 317, 362 |
| TspGWI | ACGGA | 3 cut(s) | 77, 391, 497 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| VspI | ATTAAT | 1 cut(s) | 272 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 450 |
| XapI | RAATTY | 1 cut(s) | 243 |
| XspI | CTAG | 1 cut(s) | 110 |