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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 447 |
| AccB1I | GGYRCC | 1 cut(s) | 287 |
| AccII | CGCG | 1 cut(s) | 387 |
| AccIII | TCCGGA | 1 cut(s) | 367 |
| AciI | CCGC | 3 cut(s) | 20, 76, 481 |
| AclI | AACGTT | 1 cut(s) | 517 |
| AcyI | GRCGYC | 2 cut(s) | 288, 561 |
| AfaI | GTAC | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 398, 469 |
| AgsI | TTSAA | 2 cut(s) | 94, 523 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 94 |
| AluBI | AGCT | 3 cut(s) | 280, 302, 549 |
| AluI | AGCT | 3 cut(s) | 280, 302, 549 |
| Alw26I | GTCTC | 1 cut(s) | 214 |
| Ama87I | CYCGRG | 1 cut(s) | 12 |
| Aor13HI | TCCGGA | 1 cut(s) | 367 |
| AoxI | GGCC | 1 cut(s) | 535 |
| ApeKI | GCWGC | 3 cut(s) | 17, 46, 78 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 98, 130, 305, 337 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 123 |
| AspLEI | GCGC | 2 cut(s) | 290, 604 |
| AspS9I | GGNCC | 2 cut(s) | 353, 449 |
| AsuHPI | GGTGA | 2 cut(s) | 452, 569 |
| AsuII | TTCGAA | 1 cut(s) | 117 |
| AvaI | CYCGRG | 1 cut(s) | 12 |
| AvaII | GGWCC | 2 cut(s) | 353, 449 |
| BanI | GGYRCC | 1 cut(s) | 287 |
| BbvI | GCAGC | 3 cut(s) | 29, 33, 65 |
| BccI | CCATC | 4 cut(s) | 60, 136, 170, 588 |
| BcoDI | GTCTC | 1 cut(s) | 214 |
| BfaI | CTAG | 2 cut(s) | 50, 342 |
| BfmI | CTRYAG | 1 cut(s) | 544 |
| BfoI | RGCGCY | 2 cut(s) | 291, 605 |
| BisI | GCNGC | 4 cut(s) | 18, 47, 76, 79 |
| BlsI | GCNGC | 4 cut(s) | 19, 48, 77, 80 |
| Bme18I | GGWCC | 2 cut(s) | 353, 449 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 94 |
| BmeT110I | CYCGRG | 1 cut(s) | 12 |
| BmgT120I | GGNCC | 2 cut(s) | 353, 449 |
| BmiI | GGNNCC | 4 cut(s) | 289, 354, 355, 503 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 401, 433 |
| Bpu14I | TTCGAA | 1 cut(s) | 117 |
| BsaBI | GATNNNNATC | 1 cut(s) | 179 |
| BsaHI | GRCGYC | 2 cut(s) | 288, 561 |
| BsaJI | CCNNGG | 2 cut(s) | 393, 505 |
| BsaWI | WCCGGW | 1 cut(s) | 367 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 398, 469 |
| Bse8I | GATNNNNATC | 1 cut(s) | 179 |
| BseAI | TCCGGA | 1 cut(s) | 367 |
| BseDI | CCNNGG | 2 cut(s) | 393, 505 |
| BseGI | GGATG | 1 cut(s) | 580 |
| BseJI | GATNNNNATC | 1 cut(s) | 179 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 398, 469 |
| BseMII | CTCAG | 1 cut(s) | 294 |
| BseXI | GCAGC | 3 cut(s) | 29, 33, 65 |
| Bsh1236I | CGCG | 1 cut(s) | 387 |
| BshFI | GGCC | 1 cut(s) | 537 |
| BshNI | GGYRCC | 1 cut(s) | 287 |
| BsiHKCI | CYCGRG | 1 cut(s) | 12 |
| BsiSI | CCGG | 1 cut(s) | 368 |
| BslFI | GGGAC | 2 cut(s) | 366, 374 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 398, 469 |
| BsmAI | GTCTC | 1 cut(s) | 214 |
| BsmBI | CGTCTC | 1 cut(s) | 214 |
| BsmFI | GGGAC | 2 cut(s) | 366, 374 |
| BsnI | GGCC | 1 cut(s) | 537 |
| BsoBI | CYCGRG | 1 cut(s) | 12 |
| Bsp119I | TTCGAA | 1 cut(s) | 117 |
| Bsp13I | TCCGGA | 1 cut(s) | 367 |
| Bsp143I | GATC | 1 cut(s) | 180 |
| BspACI | CCGC | 3 cut(s) | 20, 76, 481 |
| BspANI | GGCC | 1 cut(s) | 537 |
| BspCNI | CTCAG | 1 cut(s) | 295 |
| BspEI | TCCGGA | 1 cut(s) | 367 |
| BspFNI | CGCG | 1 cut(s) | 387 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 4 cut(s) | 289, 354, 355, 503 |
| BspT104I | TTCGAA | 1 cut(s) | 117 |
| BspT107I | GGYRCC | 1 cut(s) | 287 |
| BssECI | CCNNGG | 2 cut(s) | 393, 505 |
| BssMI | GATC | 1 cut(s) | 180 |
| BssNI | GRCGYC | 2 cut(s) | 288, 561 |
| BssT1I | CCWWGG | 1 cut(s) | 393 |
| Bst4CI | ACNGT | 1 cut(s) | 506 |
| Bst6I | CTCTTC | 1 cut(s) | 518 |
| BstACI | GRCGYC | 2 cut(s) | 288, 561 |
| BstBI | TTCGAA | 1 cut(s) | 117 |
| BstDEI | CTNAG | 3 cut(s) | 303, 420, 567 |
| BstDSI | CCRYGG | 1 cut(s) | 505 |
| BstF5I | GGATG | 1 cut(s) | 580 |
| BstFNI | CGCG | 1 cut(s) | 387 |
| BstH2I | RGCGCY | 2 cut(s) | 291, 605 |
| BstHHI | GCGC | 2 cut(s) | 290, 604 |
| BstKTI | GATC | 1 cut(s) | 183 |
| BstMAI | GTCTC | 1 cut(s) | 214 |
| BstMBI | GATC | 1 cut(s) | 180 |
| BstSFI | CTRYAG | 1 cut(s) | 544 |
| BstUI | CGCG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 3 cut(s) | 29, 33, 65 |
| BsuRI | GGCC | 1 cut(s) | 537 |
| BtgI | CCRYGG | 1 cut(s) | 505 |
| BtsCI | GGATG | 1 cut(s) | 580 |
| BtsIMutI | CAGTG | 1 cut(s) | 165 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 2 cut(s) | 290, 604 |
| Cfr13I | GGNCC | 2 cut(s) | 353, 449 |
| CseI | GACGC | 2 cut(s) | 376, 569 |
| Csp6I | GTAC | 1 cut(s) | 101 |
| CviAII | CATG | 2 cut(s) | 275, 292 |
| CviJI | RGCY | 8 cut(s) | 75, 122, 280, 302, 537, 542, 549, 579 |
| CviKI_1 | RGCY | 8 cut(s) | 75, 122, 280, 302, 537, 542, 549, 579 |
| CviQI | GTAC | 1 cut(s) | 101 |
| DdeI | CTNAG | 3 cut(s) | 303, 420, 567 |
| DinI | GGCGCC | 1 cut(s) | 289 |
| DpnI | GATC | 1 cut(s) | 182 |
| DpnII | GATC | 1 cut(s) | 180 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 447 |
| DriI | GACNNNNNGTC | 1 cut(s) | 94 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 447 |
| Eam1104I | CTCTTC | 1 cut(s) | 518 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 94 |
| EarI | CTCTTC | 1 cut(s) | 518 |
| Eco130I | CCWWGG | 1 cut(s) | 393 |
| Eco47I | GGWCC | 2 cut(s) | 353, 449 |
| Eco88I | CYCGRG | 1 cut(s) | 12 |
| EcoO109I | RGGNCCY | 1 cut(s) | 353 |
| EcoT14I | CCWWGG | 1 cut(s) | 393 |
| EgeI | GGCGCC | 1 cut(s) | 289 |
| EheI | GGCGCC | 1 cut(s) | 289 |
| ErhI | CCWWGG | 1 cut(s) | 393 |
| Esp3I | CGTCTC | 1 cut(s) | 214 |
| FaeI | CATG | 2 cut(s) | 278, 295 |
| FaiI | YATR | 9 cut(s) | 72, 276, 293, 336, 381, 454, 495, 546, 552 |
| FaqI | GGGAC | 2 cut(s) | 366, 374 |
| FatI | CATG | 2 cut(s) | 274, 291 |
| Fnu4HI | GCNGC | 4 cut(s) | 18, 47, 76, 79 |
| FokI | GGATG | 1 cut(s) | 567 |
| Fsp4HI | GCNGC | 4 cut(s) | 18, 47, 76, 79 |
| FspBI | CTAG | 2 cut(s) | 50, 342 |
| GlaI | GCGC | 2 cut(s) | 289, 603 |
| GluI | GCNGC | 4 cut(s) | 18, 47, 76, 79 |
| HaeII | RGCGCY | 2 cut(s) | 291, 605 |
| HaeIII | GGCC | 1 cut(s) | 537 |
| HapII | CCGG | 1 cut(s) | 368 |
| HgaI | GACGC | 2 cut(s) | 376, 569 |
| HhaI | GCGC | 2 cut(s) | 290, 604 |
| Hin1I | GRCGYC | 2 cut(s) | 288, 561 |
| Hin1II | CATG | 2 cut(s) | 278, 295 |
| Hin6I | GCGC | 2 cut(s) | 288, 602 |
| HinP1I | GCGC | 2 cut(s) | 288, 602 |
| HincII | GTYRAC | 2 cut(s) | 25, 515 |
| HindII | GTYRAC | 2 cut(s) | 25, 515 |
| HinfI | GANTC | 2 cut(s) | 38, 371 |
| HpaII | CCGG | 1 cut(s) | 368 |
| HphI | GGTGA | 2 cut(s) | 452, 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 25, 515 |
| Hpy188I | TCNGA | 1 cut(s) | 240 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 184, 275, 342, 368, 438 |
| Hpy8I | GTNNAC | 2 cut(s) | 25, 515 |
| Hpy99I | CGWCG | 1 cut(s) | 444 |
| HpyAV | CCTTC | 3 cut(s) | 134, 211, 467 |
| HpyCH4III | ACNGT | 1 cut(s) | 506 |
| HpyCH4IV | ACGT | 3 cut(s) | 297, 442, 517 |
| HpyCH4V | TGCA | 3 cut(s) | 215, 227, 254 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 420, 567 |
| HpySE526I | ACGT | 3 cut(s) | 297, 442, 517 |
| Hsp92I | GRCGYC | 2 cut(s) | 288, 561 |
| Hsp92II | CATG | 2 cut(s) | 278, 295 |
| HspAI | GCGC | 2 cut(s) | 288, 602 |
| KasI | GGCGCC | 1 cut(s) | 287 |
| KflI | GGGWCCC | 1 cut(s) | 353 |
| Kpn2I | TCCGGA | 1 cut(s) | 367 |
| Kzo9I | GATC | 1 cut(s) | 180 |
| LmnI | GCTCC | 1 cut(s) | 409 |
| LpnPI | CCDG | 3 cut(s) | 360, 381, 432 |
| Lsp1109I | GCAGC | 3 cut(s) | 29, 33, 65 |
| MaeI | CTAG | 2 cut(s) | 50, 342 |
| MaeII | ACGT | 3 cut(s) | 297, 442, 517 |
| MaeIII | GTNAC | 4 cut(s) | 35, 86, 325, 557 |
| MalI | GATC | 1 cut(s) | 182 |
| MboI | GATC | 1 cut(s) | 180 |
| MboII | GAAGA | 1 cut(s) | 535 |
| MluCI | AATT | 5 cut(s) | 112, 232, 358, 376, 433 |
| Mly113I | GGCGCC | 1 cut(s) | 288 |
| MlyI | GAGTC | 2 cut(s) | 32, 380 |
| MnlI | CCTC | 4 cut(s) | 392, 463, 503, 594 |
| MroI | TCCGGA | 1 cut(s) | 367 |
| MroXI | GAANNNNTTC | 1 cut(s) | 123 |
| MspA1I | CMGCKG | 2 cut(s) | 20, 78 |
| MspI | CCGG | 1 cut(s) | 368 |
| MvnI | CGCG | 1 cut(s) | 387 |
| NarI | GGCGCC | 1 cut(s) | 288 |
| NdeII | GATC | 1 cut(s) | 180 |
| NlaIII | CATG | 2 cut(s) | 278, 295 |
| NlaIV | GGNNCC | 4 cut(s) | 289, 354, 355, 503 |
| NmuCI | GTSAC | 4 cut(s) | 35, 86, 325, 557 |
| NspV | TTCGAA | 1 cut(s) | 117 |
| PaeR7I | CTCGAG | 1 cut(s) | 12 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PdmI | GAANNNNTTC | 1 cut(s) | 123 |
| PkrI | GCNGC | 4 cut(s) | 19, 48, 77, 80 |
| PleI | GAGTC | 2 cut(s) | 32, 379 |
| PluTI | GGCGCC | 1 cut(s) | 291 |
| PpsI | GAGTC | 2 cut(s) | 32, 379 |
| PpuMI | RGGWCCY | 1 cut(s) | 353 |
| Psp1406I | AACGTT | 1 cut(s) | 517 |
| Psp5II | RGGWCCY | 1 cut(s) | 353 |
| PspN4I | GGNNCC | 4 cut(s) | 289, 354, 355, 503 |
| PspPI | GGNCC | 2 cut(s) | 353, 449 |
| PspPPI | RGGWCCY | 1 cut(s) | 353 |
| PspXI | VCTCGAGB | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 102 |
| RsaNI | GTAC | 1 cut(s) | 101 |
| SatI | GCNGC | 4 cut(s) | 18, 47, 76, 79 |
| Sau3AI | GATC | 1 cut(s) | 180 |
| Sau96I | GGNCC | 2 cut(s) | 353, 449 |
| SchI | GAGTC | 2 cut(s) | 32, 380 |
| SfcI | CTRYAG | 1 cut(s) | 544 |
| SfoI | GGCGCC | 1 cut(s) | 289 |
| Sfr274I | CTCGAG | 1 cut(s) | 12 |
| SfuI | TTCGAA | 1 cut(s) | 117 |
| SinI | GGWCC | 2 cut(s) | 353, 449 |
| SlaI | CTCGAG | 1 cut(s) | 12 |
| SmlI | CTYRAG | 1 cut(s) | 12 |
| SmoI | CTYRAG | 1 cut(s) | 12 |
| Sse9I | AATT | 5 cut(s) | 112, 232, 358, 376, 433 |
| SsiI | CCGC | 3 cut(s) | 20, 76, 481 |
| SspDI | GGCGCC | 1 cut(s) | 287 |
| SspMI | CTAG | 2 cut(s) | 50, 342 |
| StyI | CCWWGG | 1 cut(s) | 393 |
| TaaI | ACNGT | 1 cut(s) | 506 |
| TaiI | ACGT | 3 cut(s) | 300, 445, 520 |
| TaqI | TCGA | 4 cut(s) | 13, 117, 183, 439 |
| TasI | AATT | 5 cut(s) | 112, 232, 358, 376, 433 |
| TauI | GCSGC | 1 cut(s) | 78 |
| TscAI | CASTG | 1 cut(s) | 172 |
| TseFI | GTSAC | 4 cut(s) | 35, 86, 325, 557 |
| TseI | GCWGC | 3 cut(s) | 17, 46, 78 |
| Tsp45I | GTSAC | 4 cut(s) | 35, 86, 325, 557 |
| TspDTI | ATGAA | 2 cut(s) | 263, 308 |
| TspGWI | ACGGA | 2 cut(s) | 88, 514 |
| TspRI | CASTG | 1 cut(s) | 172 |
| VpaK11BI | GGWCC | 2 cut(s) | 353, 449 |
| XbaI | TCTAGA | 1 cut(s) | 341 |
| XhoI | CTCGAG | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 1 cut(s) | 123 |
| XspI | CTAG | 2 cut(s) | 50, 342 |