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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 574 |
| AciI | CCGC | 2 cut(s) | 206, 286 |
| AclWI | GGATC | 3 cut(s) | 97, 109, 546 |
| AcsI | RAATTY | 1 cut(s) | 353 |
| AgsI | TTSAA | 2 cut(s) | 301, 549 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 319 |
| AjnI | CCWGG | 1 cut(s) | 105 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 487, 497 |
| AluI | AGCT | 4 cut(s) | 155, 161, 487, 497 |
| Alw21I | GWGCWC | 1 cut(s) | 489 |
| Alw26I | GTCTC | 1 cut(s) | 421 |
| AlwI | GGATC | 3 cut(s) | 97, 109, 546 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 574 |
| ApeKI | GCWGC | 2 cut(s) | 179, 326 |
| ApoI | RAATTY | 1 cut(s) | 353 |
| AspLEI | GCGC | 2 cut(s) | 139, 612 |
| AsuC2I | CCSGG | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 1 cut(s) | 40 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 489 |
| BbsI | GAAGAC | 1 cut(s) | 401 |
| Bbv12I | GWGCWC | 1 cut(s) | 489 |
| BbvI | GCAGC | 2 cut(s) | 191, 338 |
| BccI | CCATC | 2 cut(s) | 267, 421 |
| BciT130I | CCWGG | 1 cut(s) | 107 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcnI | CCSGG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 1 cut(s) | 421 |
| BfaI | CTAG | 2 cut(s) | 126, 263 |
| BfoI | RGCGCY | 1 cut(s) | 613 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 327 |
| BlsI | GCNGC | 2 cut(s) | 181, 328 |
| Bme1390I | CCNGG | 2 cut(s) | 72, 107 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 319 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmrFI | CCNGG | 2 cut(s) | 72, 107 |
| BmsI | GCATC | 3 cut(s) | 21, 94, 124 |
| BpiI | GAAGAC | 1 cut(s) | 401 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BpuMI | CCSGG | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 1 cut(s) | 555 |
| BsaWI | WCCGGW | 1 cut(s) | 574 |
| Bse118I | RCCGGY | 1 cut(s) | 43 |
| Bse1I | ACTGG | 1 cut(s) | 5 |
| BseAI | TCCGGA | 1 cut(s) | 574 |
| BseBI | CCWGG | 1 cut(s) | 107 |
| BseDI | CCNNGG | 1 cut(s) | 555 |
| BseGI | GGATG | 3 cut(s) | 139, 210, 525 |
| BseNI | ACTGG | 1 cut(s) | 5 |
| BseXI | GCAGC | 2 cut(s) | 191, 338 |
| BsiHKAI | GWGCWC | 1 cut(s) | 489 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 3 cut(s) | 44, 72, 575 |
| BsmAI | GTCTC | 1 cut(s) | 421 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 489 |
| Bsp13I | TCCGGA | 1 cut(s) | 574 |
| Bsp143I | GATC | 4 cut(s) | 102, 114, 369, 551 |
| BspACI | CCGC | 2 cut(s) | 206, 286 |
| BspEI | TCCGGA | 1 cut(s) | 574 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspPI | GGATC | 3 cut(s) | 97, 109, 546 |
| BsrFI | RCCGGY | 1 cut(s) | 43 |
| BsrI | ACTGG | 1 cut(s) | 5 |
| BssAI | RCCGGY | 1 cut(s) | 43 |
| BssECI | CCNNGG | 1 cut(s) | 555 |
| BssMI | GATC | 4 cut(s) | 102, 114, 369, 551 |
| Bst2UI | CCWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 3 cut(s) | 184, 435, 600 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstEII | GGTNACC | 1 cut(s) | 46 |
| BstF5I | GGATG | 3 cut(s) | 139, 210, 525 |
| BstH2I | RGCGCY | 1 cut(s) | 613 |
| BstHHI | GCGC | 2 cut(s) | 139, 612 |
| BstKTI | GATC | 4 cut(s) | 105, 117, 372, 554 |
| BstMAI | GTCTC | 1 cut(s) | 421 |
| BstMBI | GATC | 4 cut(s) | 102, 114, 369, 551 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 26, 188, 197, 484 |
| BstNI | CCWGG | 1 cut(s) | 107 |
| BstPI | GGTNACC | 1 cut(s) | 46 |
| BstSCI | CCNGG | 2 cut(s) | 70, 105 |
| BstV1I | GCAGC | 2 cut(s) | 191, 338 |
| BstV2I | GAAGAC | 1 cut(s) | 401 |
| BstX2I | RGATCY | 2 cut(s) | 102, 551 |
| BstYI | RGATCY | 2 cut(s) | 102, 551 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtgZI | GCGATG | 1 cut(s) | 395 |
| BtsCI | GGATG | 3 cut(s) | 139, 210, 525 |
| BtsIMutI | CAGTG | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 2 cut(s) | 139, 612 |
| Cfr10I | RCCGGY | 1 cut(s) | 43 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 537, 572 |
| CviAII | CATG | 1 cut(s) | 482 |
| DdeI | CTNAG | 3 cut(s) | 184, 435, 600 |
| DpnI | GATC | 4 cut(s) | 104, 116, 371, 553 |
| DpnII | GATC | 4 cut(s) | 102, 114, 369, 551 |
| DriI | GACNNNNNGTC | 1 cut(s) | 319 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 319 |
| Ecl136II | GAGCTC | 1 cut(s) | 487 |
| Eco24I | GRGCYC | 1 cut(s) | 489 |
| Eco53kI | GAGCTC | 1 cut(s) | 487 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 46 |
| EcoICRI | GAGCTC | 1 cut(s) | 487 |
| EcoO65I | GGTNACC | 1 cut(s) | 46 |
| EcoRI | GAATTC | 1 cut(s) | 353 |
| EcoRII | CCWGG | 1 cut(s) | 105 |
| EcoT38I | GRGCYC | 1 cut(s) | 489 |
| FaeI | CATG | 1 cut(s) | 485 |
| FatI | CATG | 1 cut(s) | 481 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 327 |
| FokI | GGATG | 3 cut(s) | 146, 197, 512 |
| FriOI | GRGCYC | 1 cut(s) | 489 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 327 |
| FspBI | CTAG | 2 cut(s) | 126, 263 |
| GlaI | GCGC | 2 cut(s) | 138, 611 |
| GluI | GCNGC | 2 cut(s) | 180, 327 |
| HaeII | RGCGCY | 1 cut(s) | 613 |
| HapII | CCGG | 3 cut(s) | 44, 72, 575 |
| HhaI | GCGC | 2 cut(s) | 139, 612 |
| Hin1II | CATG | 1 cut(s) | 485 |
| Hin6I | GCGC | 2 cut(s) | 137, 610 |
| HinP1I | GCGC | 2 cut(s) | 137, 610 |
| HincII | GTYRAC | 1 cut(s) | 39 |
| HindII | GTYRAC | 1 cut(s) | 39 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 4 cut(s) | 220, 245, 397, 578 |
| HpaII | CCGG | 3 cut(s) | 44, 72, 575 |
| HphI | GGTGA | 1 cut(s) | 40 |
| Hpy166II | GTNNAC | 1 cut(s) | 39 |
| Hpy188III | TCNNGA | 6 cut(s) | 131, 257, 311, 482, 549, 575 |
| Hpy8I | GTNNAC | 1 cut(s) | 39 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 23, 237 |
| HpyCH4V | TGCA | 2 cut(s) | 422, 461 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 26, 188, 197, 484 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 435, 600 |
| HpySE526I | ACGT | 2 cut(s) | 23, 237 |
| Hsp92II | CATG | 1 cut(s) | 485 |
| HspAI | GCGC | 2 cut(s) | 137, 610 |
| Kpn2I | TCCGGA | 1 cut(s) | 574 |
| Kzo9I | GATC | 4 cut(s) | 102, 114, 369, 551 |
| LmnI | GCTCC | 1 cut(s) | 494 |
| Lsp1109I | GCAGC | 2 cut(s) | 191, 338 |
| LweI | GCATC | 3 cut(s) | 21, 94, 124 |
| MaeI | CTAG | 2 cut(s) | 126, 263 |
| MaeII | ACGT | 2 cut(s) | 23, 237 |
| MaeIII | GTNAC | 3 cut(s) | 46, 242, 590 |
| MalI | GATC | 4 cut(s) | 104, 116, 371, 553 |
| MboI | GATC | 4 cut(s) | 102, 114, 369, 551 |
| MboII | GAAGA | 3 cut(s) | 179, 406, 547 |
| MflI | RGATCY | 2 cut(s) | 102, 551 |
| MhlI | GDGCHC | 1 cut(s) | 489 |
| MluCI | AATT | 4 cut(s) | 353, 447, 544, 583 |
| MlyI | GAGTC | 3 cut(s) | 214, 239, 391 |
| MnlI | CCTC | 4 cut(s) | 41, 128, 181, 293 |
| MroI | TCCGGA | 1 cut(s) | 574 |
| MseI | TTAA | 2 cut(s) | 339, 347 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 530 |
| MspI | CCGG | 3 cut(s) | 44, 72, 575 |
| MspR9I | CCNGG | 2 cut(s) | 72, 107 |
| MvaI | CCWGG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 26, 188, 197, 484 |
| NciI | CCSGG | 1 cut(s) | 72 |
| NdeII | GATC | 4 cut(s) | 102, 114, 369, 551 |
| NlaIII | CATG | 1 cut(s) | 485 |
| NmuCI | GTSAC | 3 cut(s) | 46, 242, 590 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PfeI | GAWTC | 1 cut(s) | 578 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 2 cut(s) | 181, 328 |
| PleI | GAGTC | 3 cut(s) | 214, 239, 391 |
| PpsI | GAGTC | 3 cut(s) | 214, 239, 391 |
| Psp124BI | GAGCTC | 1 cut(s) | 489 |
| Psp6I | CCWGG | 1 cut(s) | 105 |
| PspEI | GGTNACC | 1 cut(s) | 46 |
| PspGI | CCWGG | 1 cut(s) | 105 |
| PspXI | VCTCGAGB | 1 cut(s) | 119 |
| PsuI | RGATCY | 2 cut(s) | 102, 551 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 530 |
| SacI | GAGCTC | 1 cut(s) | 489 |
| SaqAI | TTAA | 2 cut(s) | 339, 347 |
| SatI | GCNGC | 2 cut(s) | 180, 327 |
| Sau3AI | GATC | 4 cut(s) | 102, 114, 369, 551 |
| SchI | GAGTC | 3 cut(s) | 214, 239, 391 |
| ScrFI | CCNGG | 2 cut(s) | 72, 107 |
| SduI | GDGCHC | 1 cut(s) | 489 |
| SetI | ASST | 7 cut(s) | 26, 157, 163, 240, 264, 489, 499 |
| SfaNI | GCATC | 3 cut(s) | 21, 94, 124 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 530 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 353, 447, 544, 583 |
| SsiI | CCGC | 2 cut(s) | 206, 286 |
| SspMI | CTAG | 2 cut(s) | 126, 263 |
| SstI | GAGCTC | 1 cut(s) | 489 |
| StyD4I | CCNGG | 2 cut(s) | 70, 105 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 26, 240 |
| TaqI | TCGA | 2 cut(s) | 120, 445 |
| TasI | AATT | 4 cut(s) | 353, 447, 544, 583 |
| TfiI | GAWTC | 1 cut(s) | 578 |
| Tru1I | TTAA | 2 cut(s) | 339, 347 |
| Tru9I | TTAA | 2 cut(s) | 339, 347 |
| TscAI | CASTG | 1 cut(s) | 22 |
| TseFI | GTSAC | 3 cut(s) | 46, 242, 590 |
| TseI | GCWGC | 2 cut(s) | 179, 326 |
| Tsp45I | GTSAC | 3 cut(s) | 46, 242, 590 |
| TspDTI | ATGAA | 2 cut(s) | 470, 515 |
| TspGWI | ACGGA | 2 cut(s) | 230, 544 |
| TspRI | CASTG | 1 cut(s) | 22 |
| XapI | RAATTY | 1 cut(s) | 353 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 2 cut(s) | 126, 263 |