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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 473 |
| AccB1I | GGYRCC | 1 cut(s) | 586 |
| AciI | CCGC | 2 cut(s) | 106, 507 |
| AclWI | GGATC | 3 cut(s) | 38, 296, 366 |
| AcoI | YGGCCR | 1 cut(s) | 573 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 587 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 2 cut(s) | 254, 307 |
| AluI | AGCT | 2 cut(s) | 254, 307 |
| Alw26I | GTCTC | 2 cut(s) | 241, 415 |
| AlwI | GGATC | 3 cut(s) | 38, 296, 366 |
| AoxI | GGCC | 1 cut(s) | 573 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 2 cut(s) | 431, 589 |
| AspS9I | GGNCC | 1 cut(s) | 475 |
| AsuHPI | GGTGA | 1 cut(s) | 530 |
| AvaII | GGWCC | 1 cut(s) | 475 |
| BalI | TGGCCA | 1 cut(s) | 575 |
| BanI | GGYRCC | 1 cut(s) | 586 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciVI | GTATCC | 1 cut(s) | 450 |
| BcoDI | GTCTC | 2 cut(s) | 241, 415 |
| BfaI | CTAG | 1 cut(s) | 38 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 2 cut(s) | 432, 590 |
| BfuI | GTATCC | 1 cut(s) | 450 |
| Bme18I | GGWCC | 1 cut(s) | 475 |
| BmgT120I | GGNCC | 1 cut(s) | 475 |
| BmiI | GGNNCC | 2 cut(s) | 316, 588 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 587 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BshFI | GGCC | 1 cut(s) | 575 |
| BshNI | GGYRCC | 1 cut(s) | 586 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsmAI | GTCTC | 2 cut(s) | 241, 415 |
| BsnI | GGCC | 1 cut(s) | 575 |
| Bsp143I | GATC | 4 cut(s) | 30, 189, 288, 371 |
| BspACI | CCGC | 2 cut(s) | 106, 507 |
| BspANI | GGCC | 1 cut(s) | 575 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 2 cut(s) | 316, 588 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 3 cut(s) | 38, 296, 366 |
| BspT107I | GGYRCC | 1 cut(s) | 586 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 4 cut(s) | 30, 189, 288, 371 |
| BssNI | GRCGYC | 1 cut(s) | 587 |
| Bst6I | CTCTTC | 1 cut(s) | 528 |
| BstACI | GRCGYC | 1 cut(s) | 587 |
| BstDEI | CTNAG | 6 cut(s) | 142, 255, 419, 432, 451, 599 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstEII | GGTNACC | 1 cut(s) | 502 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 2 cut(s) | 432, 590 |
| BstHHI | GCGC | 2 cut(s) | 431, 589 |
| BstKTI | GATC | 4 cut(s) | 33, 192, 291, 374 |
| BstMAI | GTCTC | 2 cut(s) | 241, 415 |
| BstMBI | GATC | 4 cut(s) | 30, 189, 288, 371 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 435 |
| BstPI | GGTNACC | 1 cut(s) | 502 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 2 cut(s) | 30, 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 583 |
| BstYI | RGATCY | 2 cut(s) | 30, 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 450 |
| BsuRI | GGCC | 1 cut(s) | 575 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 2 cut(s) | 431, 589 |
| Cfr13I | GGNCC | 1 cut(s) | 475 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CviAII | CATG | 4 cut(s) | 302, 319, 338, 577 |
| CviJI | RGCY | 6 cut(s) | 102, 254, 307, 317, 575, 605 |
| CviKI_1 | RGCY | 6 cut(s) | 102, 254, 307, 317, 575, 605 |
| DdeI | CTNAG | 6 cut(s) | 142, 255, 419, 432, 451, 599 |
| DinI | GGCGCC | 1 cut(s) | 588 |
| DpnI | GATC | 4 cut(s) | 32, 191, 290, 373 |
| DpnII | GATC | 4 cut(s) | 30, 189, 288, 371 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 473 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 473 |
| EaeI | YGGCCR | 1 cut(s) | 573 |
| Eam1104I | CTCTTC | 1 cut(s) | 528 |
| EarI | CTCTTC | 1 cut(s) | 528 |
| Eco47I | GGWCC | 1 cut(s) | 475 |
| Eco91I | GGTNACC | 1 cut(s) | 502 |
| EcoO65I | GGTNACC | 1 cut(s) | 502 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EgeI | GGCGCC | 1 cut(s) | 588 |
| EheI | GGCGCC | 1 cut(s) | 588 |
| FaeI | CATG | 4 cut(s) | 305, 322, 341, 580 |
| FatI | CATG | 4 cut(s) | 301, 318, 337, 576 |
| FokI | GGATG | 1 cut(s) | 332 |
| FspBI | CTAG | 1 cut(s) | 38 |
| GlaI | GCGC | 2 cut(s) | 430, 588 |
| HaeII | RGCGCY | 2 cut(s) | 432, 590 |
| HaeIII | GGCC | 1 cut(s) | 575 |
| HhaI | GCGC | 2 cut(s) | 431, 589 |
| Hin1I | GRCGYC | 1 cut(s) | 587 |
| Hin1II | CATG | 4 cut(s) | 305, 322, 341, 580 |
| Hin6I | GCGC | 2 cut(s) | 429, 587 |
| HinP1I | GCGC | 2 cut(s) | 429, 587 |
| HinfI | GANTC | 3 cut(s) | 65, 267, 397 |
| HphI | GGTGA | 1 cut(s) | 530 |
| Hpy166II | GTNNAC | 2 cut(s) | 521, 541 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 396 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 131, 302, 369 |
| Hpy8I | GTNNAC | 2 cut(s) | 521, 541 |
| HpyAV | CCTTC | 2 cut(s) | 238, 493 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 468, 543 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 435 |
| HpyF3I | CTNAG | 6 cut(s) | 142, 255, 419, 432, 451, 599 |
| HpySE526I | ACGT | 3 cut(s) | 57, 468, 543 |
| Hsp92I | GRCGYC | 1 cut(s) | 587 |
| Hsp92II | CATG | 4 cut(s) | 305, 322, 341, 580 |
| HspAI | GCGC | 2 cut(s) | 429, 587 |
| KasI | GGCGCC | 1 cut(s) | 586 |
| Kzo9I | GATC | 4 cut(s) | 30, 189, 288, 371 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 6 cut(s) | 83, 90, 246, 267, 458, 557 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 1 cut(s) | 38 |
| MaeII | ACGT | 3 cut(s) | 57, 468, 543 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 502 |
| MalI | GATC | 4 cut(s) | 32, 191, 290, 373 |
| MboI | GATC | 4 cut(s) | 30, 189, 288, 371 |
| MboII | GAAGA | 5 cut(s) | 20, 23, 53, 367, 545 |
| MflI | RGATCY | 2 cut(s) | 30, 371 |
| MlsI | TGGCCA | 1 cut(s) | 575 |
| MluCI | AATT | 3 cut(s) | 173, 364, 402 |
| MluNI | TGGCCA | 1 cut(s) | 575 |
| Mly113I | GGCGCC | 1 cut(s) | 587 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MnlI | CCTC | 6 cut(s) | 113, 418, 529, 549, 553, 579 |
| Mox20I | TGGCCA | 1 cut(s) | 575 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 575 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| Msp20I | TGGCCA | 1 cut(s) | 575 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 435 |
| NarI | GGCGCC | 1 cut(s) | 587 |
| NdeII | GATC | 4 cut(s) | 30, 189, 288, 371 |
| NlaIII | CATG | 4 cut(s) | 305, 322, 341, 580 |
| NlaIV | GGNNCC | 2 cut(s) | 316, 588 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 267, 397 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PluTI | GGCGCC | 1 cut(s) | 590 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| PspEI | GGTNACC | 1 cut(s) | 502 |
| PspN4I | GGNNCC | 2 cut(s) | 316, 588 |
| PspPI | GGNCC | 1 cut(s) | 475 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 2 cut(s) | 30, 371 |
| RseI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 4 cut(s) | 30, 189, 288, 371 |
| Sau96I | GGNCC | 1 cut(s) | 475 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 1 cut(s) | 588 |
| SinI | GGWCC | 1 cut(s) | 475 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| Sse9I | AATT | 3 cut(s) | 173, 364, 402 |
| SsiI | CCGC | 2 cut(s) | 106, 507 |
| SspDI | GGCGCC | 1 cut(s) | 586 |
| SspMI | CTAG | 1 cut(s) | 38 |
| TaiI | ACGT | 3 cut(s) | 60, 471, 546 |
| TaqI | TCGA | 4 cut(s) | 265, 270, 368, 531 |
| TasI | AATT | 3 cut(s) | 173, 364, 402 |
| TfiI | GAWTC | 2 cut(s) | 267, 397 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 3 cut(s) | 50, 301, 364 |
| VpaK11BI | GGWCC | 1 cut(s) | 475 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 1 cut(s) | 38 |