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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 243, 288 |
| Acc36I | ACCTGC | 1 cut(s) | 378 |
| AccB1I | GGYRCC | 2 cut(s) | 464, 485 |
| AccBSI | CCGCTC | 1 cut(s) | 316 |
| AciI | CCGC | 4 cut(s) | 145, 316, 364, 385 |
| AclWI | GGATC | 1 cut(s) | 176 |
| AcuI | CTGAAG | 1 cut(s) | 171 |
| AcvI | CACGTG | 2 cut(s) | 407, 425 |
| AcyI | GRCGYC | 1 cut(s) | 465 |
| AdeI | CACNNNGTG | 1 cut(s) | 410 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 51, 302, 303, 373, 426, 455 |
| AflIII | ACRYGT | 2 cut(s) | 404, 422 |
| AgsI | TTSAA | 2 cut(s) | 249, 495 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 68 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| AluBI | AGCT | 3 cut(s) | 29, 85, 187 |
| AluI | AGCT | 3 cut(s) | 29, 85, 187 |
| AlwI | GGATC | 1 cut(s) | 176 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 30 |
| AspLEI | GCGC | 1 cut(s) | 467 |
| AspS9I | GGNCC | 1 cut(s) | 353 |
| AvaII | GGWCC | 1 cut(s) | 353 |
| BanI | GGYRCC | 2 cut(s) | 464, 485 |
| BauI | CACGAG | 3 cut(s) | 172, 230, 474 |
| BbrPI | CACGTG | 2 cut(s) | 407, 425 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BciVI | GTATCC | 1 cut(s) | 455 |
| BfmI | CTRYAG | 1 cut(s) | 38 |
| BfoI | RGCGCY | 1 cut(s) | 468 |
| BfuAI | ACCTGC | 1 cut(s) | 378 |
| BfuI | GTATCC | 1 cut(s) | 455 |
| Bme1390I | CCNGG | 1 cut(s) | 450 |
| Bme18I | GGWCC | 1 cut(s) | 353 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 68 |
| BmgT120I | GGNCC | 1 cut(s) | 353 |
| BmiI | GGNNCC | 4 cut(s) | 320, 354, 466, 487 |
| BmrFI | CCNGG | 1 cut(s) | 450 |
| BmsI | GCATC | 1 cut(s) | 505 |
| BsaAI | YACGTR | 2 cut(s) | 407, 425 |
| BsaHI | GRCGYC | 1 cut(s) | 465 |
| BsaJI | CCNNGG | 2 cut(s) | 448, 468 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 51, 302, 303, 373, 426, 455 |
| Bse3DI | GCAATG | 1 cut(s) | 421 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 2 cut(s) | 448, 468 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 51, 302, 303, 373, 426, 455 |
| BseMI | GCAATG | 1 cut(s) | 421 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BshNI | GGYRCC | 2 cut(s) | 464, 485 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 51, 302, 303, 373, 426, 455 |
| Bsp143I | GATC | 1 cut(s) | 168 |
| Bsp19I | CCATGG | 1 cut(s) | 468 |
| BspACI | CCGC | 4 cut(s) | 145, 316, 364, 385 |
| BspCNI | CTCAG | 1 cut(s) | 202 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 4 cut(s) | 320, 354, 466, 487 |
| BspMI | ACCTGC | 1 cut(s) | 378 |
| BspPI | GGATC | 1 cut(s) | 176 |
| BspQI | GCTCTTC | 1 cut(s) | 36 |
| BspT107I | GGYRCC | 2 cut(s) | 464, 485 |
| BsrBI | CCGCTC | 1 cut(s) | 316 |
| BsrDI | GCAATG | 1 cut(s) | 421 |
| BssECI | CCNNGG | 2 cut(s) | 448, 468 |
| BssMI | GATC | 1 cut(s) | 168 |
| BssNI | GRCGYC | 1 cut(s) | 465 |
| BssSI | CACGAG | 3 cut(s) | 172, 230, 474 |
| BssT1I | CCWWGG | 1 cut(s) | 468 |
| Bst2BI | CACGAG | 3 cut(s) | 172, 230, 474 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 1 cut(s) | 42 |
| Bst6I | CTCTTC | 1 cut(s) | 36 |
| BstACI | GRCGYC | 1 cut(s) | 465 |
| BstBAI | YACGTR | 2 cut(s) | 407, 425 |
| BstDEI | CTNAG | 2 cut(s) | 210, 324 |
| BstDSI | CCRYGG | 1 cut(s) | 468 |
| BstH2I | RGCGCY | 1 cut(s) | 468 |
| BstHHI | GCGC | 1 cut(s) | 467 |
| BstKTI | GATC | 1 cut(s) | 171 |
| BstMBI | GATC | 1 cut(s) | 168 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstSCI | CCNGG | 1 cut(s) | 448 |
| BstSFI | CTRYAG | 1 cut(s) | 38 |
| BsuI | GTATCC | 1 cut(s) | 455 |
| BtgI | CCRYGG | 1 cut(s) | 468 |
| BtsIMutI | CAGTG | 1 cut(s) | 147 |
| BveI | ACCTGC | 1 cut(s) | 378 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 467 |
| Cfr13I | GGNCC | 1 cut(s) | 353 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 4 cut(s) | 46, 218, 275, 469 |
| CviJI | RGCY | 5 cut(s) | 29, 85, 122, 187, 473 |
| CviKI_1 | RGCY | 5 cut(s) | 29, 85, 122, 187, 473 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 2 cut(s) | 210, 324 |
| DinI | GGCGCC | 1 cut(s) | 466 |
| DpnI | GATC | 1 cut(s) | 170 |
| DpnII | GATC | 1 cut(s) | 168 |
| DraIII | CACNNNGTG | 1 cut(s) | 410 |
| DriI | GACNNNNNGTC | 1 cut(s) | 68 |
| Eam1104I | CTCTTC | 1 cut(s) | 36 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 68 |
| EarI | CTCTTC | 1 cut(s) | 36 |
| Eco130I | CCWWGG | 1 cut(s) | 468 |
| Eco47I | GGWCC | 1 cut(s) | 353 |
| Eco57I | CTGAAG | 1 cut(s) | 171 |
| Eco72I | CACGTG | 2 cut(s) | 407, 425 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| EcoT14I | CCWWGG | 1 cut(s) | 468 |
| EgeI | GGCGCC | 1 cut(s) | 466 |
| EheI | GGCGCC | 1 cut(s) | 466 |
| ErhI | CCWWGG | 1 cut(s) | 468 |
| FaeI | CATG | 4 cut(s) | 49, 221, 278, 472 |
| FatI | CATG | 4 cut(s) | 45, 217, 274, 468 |
| GlaI | GCGC | 1 cut(s) | 466 |
| HaeII | RGCGCY | 1 cut(s) | 468 |
| HhaI | GCGC | 1 cut(s) | 467 |
| Hin1I | GRCGYC | 1 cut(s) | 465 |
| Hin1II | CATG | 4 cut(s) | 49, 221, 278, 472 |
| Hin6I | GCGC | 1 cut(s) | 465 |
| HinP1I | GCGC | 1 cut(s) | 465 |
| Hpy166II | GTNNAC | 1 cut(s) | 62 |
| Hpy188I | TCNGA | 1 cut(s) | 25 |
| Hpy188III | TCNNGA | 4 cut(s) | 172, 232, 249, 275 |
| Hpy8I | GTNNAC | 1 cut(s) | 62 |
| HpyAV | CCTTC | 2 cut(s) | 118, 371 |
| HpyCH4III | ACNGT | 1 cut(s) | 42 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 406, 424 |
| HpyCH4V | TGCA | 2 cut(s) | 293, 309 |
| HpyF3I | CTNAG | 2 cut(s) | 210, 324 |
| HpySE526I | ACGT | 3 cut(s) | 6, 406, 424 |
| Hsp92I | GRCGYC | 1 cut(s) | 465 |
| Hsp92II | CATG | 4 cut(s) | 49, 221, 278, 472 |
| HspAI | GCGC | 1 cut(s) | 465 |
| KasI | GGCGCC | 1 cut(s) | 464 |
| Kzo9I | GATC | 1 cut(s) | 168 |
| LguI | GCTCTTC | 1 cut(s) | 36 |
| LmnI | GCTCC | 1 cut(s) | 313 |
| LpnPI | CCDG | 5 cut(s) | 81, 147, 373, 435, 462 |
| LweI | GCATC | 1 cut(s) | 505 |
| MaeII | ACGT | 3 cut(s) | 6, 406, 424 |
| MaeIII | GTNAC | 2 cut(s) | 70, 205 |
| MalI | GATC | 1 cut(s) | 170 |
| MbiI | CCGCTC | 1 cut(s) | 316 |
| MboI | GATC | 1 cut(s) | 168 |
| MboII | GAAGA | 1 cut(s) | 23 |
| MluCI | AATT | 5 cut(s) | 19, 87, 238, 244, 283 |
| Mly113I | GGCGCC | 1 cut(s) | 465 |
| MnlI | CCTC | 7 cut(s) | 45, 168, 228, 271, 296, 338, 495 |
| MroXI | GAANNNNTTC | 1 cut(s) | 30 |
| MslI | CAYNNNNRTG | 1 cut(s) | 230 |
| MspR9I | CCNGG | 1 cut(s) | 450 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| NarI | GGCGCC | 1 cut(s) | 465 |
| NcoI | CCATGG | 1 cut(s) | 468 |
| NdeII | GATC | 1 cut(s) | 168 |
| NlaIII | CATG | 4 cut(s) | 49, 221, 278, 472 |
| NlaIV | GGNNCC | 4 cut(s) | 320, 354, 466, 487 |
| NmuCI | GTSAC | 1 cut(s) | 70 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PciSI | GCTCTTC | 1 cut(s) | 36 |
| PdmI | GAANNNNTTC | 1 cut(s) | 30 |
| PluTI | GGCGCC | 1 cut(s) | 468 |
| PmaCI | CACGTG | 2 cut(s) | 407, 425 |
| PmlI | CACGTG | 2 cut(s) | 407, 425 |
| Ppu21I | YACGTR | 2 cut(s) | 407, 425 |
| PsiI | TTATAA | 2 cut(s) | 243, 288 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspCI | CACGTG | 2 cut(s) | 407, 425 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 4 cut(s) | 320, 354, 466, 487 |
| PspPI | GGNCC | 1 cut(s) | 353 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 1 cut(s) | 230 |
| SapI | GCTCTTC | 1 cut(s) | 36 |
| Sau3AI | GATC | 1 cut(s) | 168 |
| Sau96I | GGNCC | 1 cut(s) | 353 |
| ScrFI | CCNGG | 1 cut(s) | 450 |
| SfaNI | GCATC | 1 cut(s) | 505 |
| SfcI | CTRYAG | 1 cut(s) | 38 |
| SfoI | GGCGCC | 1 cut(s) | 466 |
| SinI | GGWCC | 1 cut(s) | 353 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 230 |
| Sse9I | AATT | 5 cut(s) | 19, 87, 238, 244, 283 |
| SsiI | CCGC | 4 cut(s) | 145, 316, 364, 385 |
| SspDI | GGCGCC | 1 cut(s) | 464 |
| StyD4I | CCNGG | 1 cut(s) | 448 |
| StyI | CCWWGG | 1 cut(s) | 468 |
| TaaI | ACNGT | 1 cut(s) | 42 |
| TaiI | ACGT | 3 cut(s) | 9, 409, 427 |
| TasI | AATT | 5 cut(s) | 19, 87, 238, 244, 283 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TseFI | GTSAC | 1 cut(s) | 70 |
| Tsp45I | GTSAC | 1 cut(s) | 70 |
| TspDTI | ATGAA | 2 cut(s) | 170, 263 |
| TspGWI | ACGGA | 1 cut(s) | 181 |
| TspRI | CASTG | 1 cut(s) | 154 |
| VpaK11BI | GGWCC | 1 cut(s) | 353 |
| XmnI | GAANNNNTTC | 1 cut(s) | 30 |