No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 44 - 165 | 1.4e-08 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 102 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 5 cut(s) | 44, 155, 161, 182, 363 |
| AluI | AGCT | 5 cut(s) | 44, 155, 161, 182, 363 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 366 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbsI | GAAGAC | 1 cut(s) | 476 |
| BbvCI | CCTCAGC | 1 cut(s) | 359 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 215, 342, 496 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 515 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 442 |
| BpiI | GAAGAC | 1 cut(s) | 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 359 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseMII | CTCAG | 1 cut(s) | 373 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp143I | GATC | 1 cut(s) | 444 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 372 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssMI | GATC | 1 cut(s) | 444 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 1 cut(s) | 46 |
| BstDEI | CTNAG | 2 cut(s) | 359, 510 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstKTI | GATC | 1 cut(s) | 447 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 1 cut(s) | 444 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 476 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 1 cut(s) | 46 |
| CaiI | CAGNNNCTG | 1 cut(s) | 366 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 537 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 359, 510 |
| DpnI | GATC | 1 cut(s) | 446 |
| DpnII | GATC | 1 cut(s) | 444 |
| Eco147I | AGGCCT | 1 cut(s) | 95 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRI | GAATTC | 1 cut(s) | 102 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 1 cut(s) | 540 |
| FatI | CATG | 1 cut(s) | 536 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 1 cut(s) | 540 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 115, 220, 236, 472, 522 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 71, 107, 119, 332, 386 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 359, 510 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92II | CATG | 1 cut(s) | 540 |
| Kzo9I | GATC | 1 cut(s) | 444 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 36, 46, 92, 116, 143, 257, 286 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 442 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 505, 529 |
| MalI | GATC | 1 cut(s) | 446 |
| MboI | GATC | 1 cut(s) | 444 |
| MboII | GAAGA | 1 cut(s) | 481 |
| MluCI | AATT | 3 cut(s) | 17, 102, 428 |
| MlyI | GAGTC | 2 cut(s) | 214, 466 |
| MnlI | CCTC | 3 cut(s) | 142, 181, 368 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspA1I | CMGCKG | 1 cut(s) | 44 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 444 |
| NlaIII | CATG | 1 cut(s) | 540 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PceI | AGGCCT | 1 cut(s) | 95 |
| PfeI | GAWTC | 3 cut(s) | 115, 236, 522 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 466 |
| PpsI | GAGTC | 2 cut(s) | 214, 466 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PstNI | CAGNNNCTG | 1 cut(s) | 366 |
| PvuII | CAGCTG | 1 cut(s) | 44 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 1 cut(s) | 444 |
| SchI | GAGTC | 2 cut(s) | 214, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SfaNI | GCATC | 2 cut(s) | 94, 442 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 102, 428 |
| SseBI | AGGCCT | 1 cut(s) | 95 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| StuI | AGGCCT | 1 cut(s) | 95 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 4 cut(s) | 120, 398, 520, 525 |
| TasI | AATT | 3 cut(s) | 17, 102, 428 |
| TfiI | GAWTC | 3 cut(s) | 115, 236, 522 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 2 cut(s) | 272, 398 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 2 cut(s) | 126, 338 |