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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 186 |
| Acc36I | ACCTGC | 2 cut(s) | 186, 370 |
| AccB1I | GGYRCC | 4 cut(s) | 45, 115, 888, 1046 |
| AccI | GTMKAC | 1 cut(s) | 917 |
| AciI | CCGC | 5 cut(s) | 113, 394, 565, 786, 1188 |
| AclWI | GGATC | 3 cut(s) | 755, 825, 929 |
| AcoI | YGGCCR | 3 cut(s) | 283, 303, 1033 |
| AcsI | RAATTY | 2 cut(s) | 218, 632 |
| AcyI | GRCGYC | 3 cut(s) | 46, 889, 1047 |
| AdeI | CACNNNGTG | 1 cut(s) | 1228 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 42, 130, 252, 301, 312 |
| AgsI | TTSAA | 5 cut(s) | 53, 83, 217, 580, 1084 |
| AjiI | CACGTC | 1 cut(s) | 451 |
| AjnI | CCWGG | 2 cut(s) | 95, 444 |
| AluBI | AGCT | 8 cut(s) | 66, 86, 470, 476, 766, 776, 1169, 1220 |
| AluI | AGCT | 8 cut(s) | 66, 86, 470, 476, 766, 776, 1169, 1220 |
| Alw21I | GWGCWC | 2 cut(s) | 768, 1171 |
| Alw26I | GTCTC | 1 cut(s) | 700 |
| AlwI | GGATC | 3 cut(s) | 755, 825, 929 |
| Ama87I | CYCGRG | 1 cut(s) | 434 |
| AoxI | GGCC | 5 cut(s) | 152, 283, 303, 495, 1033 |
| ApoI | RAATTY | 2 cut(s) | 218, 632 |
| AspLEI | GCGC | 3 cut(s) | 48, 891, 1049 |
| AspS9I | GGNCC | 1 cut(s) | 153 |
| AsuC2I | CCSGG | 3 cut(s) | 38, 183, 254 |
| AsuHPI | GGTGA | 3 cut(s) | 167, 265, 1177 |
| AvaI | CYCGRG | 1 cut(s) | 434 |
| BalI | TGGCCA | 1 cut(s) | 1035 |
| BanI | GGYRCC | 4 cut(s) | 45, 115, 888, 1046 |
| BanII | GRGCYC | 2 cut(s) | 768, 1171 |
| BauI | CACGAG | 2 cut(s) | 1170, 1212 |
| BbsI | GAAGAC | 1 cut(s) | 680 |
| Bbv12I | GWGCWC | 2 cut(s) | 768, 1171 |
| BccI | CCATC | 2 cut(s) | 530, 700 |
| BceAI | ACGGC | 1 cut(s) | 1042 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 719, 753 |
| BciT130I | CCWGG | 2 cut(s) | 97, 446 |
| BcnI | CCSGG | 3 cut(s) | 38, 183, 254 |
| BcoDI | GTCTC | 1 cut(s) | 700 |
| BfaI | CTAG | 4 cut(s) | 59, 135, 441, 1256 |
| BfmI | CTRYAG | 1 cut(s) | 411 |
| BfoI | RGCGCY | 3 cut(s) | 49, 892, 1050 |
| BfuAI | ACCTGC | 2 cut(s) | 186, 370 |
| BisI | GCNGC | 1 cut(s) | 786 |
| BlsI | GCNGC | 1 cut(s) | 787 |
| Bme1390I | CCNGG | 5 cut(s) | 38, 97, 183, 254, 446 |
| BmeT110I | CYCGRG | 1 cut(s) | 434 |
| BmgBI | CACGTC | 1 cut(s) | 451 |
| BmgT120I | GGNCC | 1 cut(s) | 153 |
| BmiI | GGNNCC | 8 cut(s) | 47, 117, 155, 258, 711, 890, 989, 1048 |
| BmrFI | CCNGG | 5 cut(s) | 38, 97, 183, 254, 446 |
| BmsI | GCATC | 2 cut(s) | 409, 646 |
| BpiI | GAAGAC | 1 cut(s) | 680 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 35 |
| BpmI | CTGGAG | 1 cut(s) | 79 |
| BpuEI | CTTGAG | 2 cut(s) | 389, 456 |
| BpuMI | CCSGG | 3 cut(s) | 38, 183, 254 |
| Bsa29I | ATCGAT | 1 cut(s) | 729 |
| BsaHI | GRCGYC | 3 cut(s) | 46, 889, 1047 |
| BsaJI | CCNNGG | 2 cut(s) | 36, 834 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 304, 334 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 42, 130, 252, 301, 312 |
| Bse118I | RCCGGY | 3 cut(s) | 130, 281, 301 |
| Bse1I | ACTGG | 2 cut(s) | 114, 155 |
| BseBI | CCWGG | 2 cut(s) | 97, 446 |
| BseCI | ATCGAT | 1 cut(s) | 729 |
| BseDI | CCNNGG | 2 cut(s) | 36, 834 |
| BseGI | GGATG | 3 cut(s) | 321, 525, 553 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 42, 130, 252, 301, 312 |
| BseMII | CTCAG | 1 cut(s) | 1134 |
| BseNI | ACTGG | 2 cut(s) | 114, 155 |
| BshFI | GGCC | 5 cut(s) | 154, 285, 305, 497, 1035 |
| BshNI | GGYRCC | 4 cut(s) | 45, 115, 888, 1046 |
| BshVI | ATCGAT | 1 cut(s) | 729 |
| BsiHKAI | GWGCWC | 2 cut(s) | 768, 1171 |
| BsiHKCI | CYCGRG | 1 cut(s) | 434 |
| BsiSI | CCGG | 6 cut(s) | 38, 131, 182, 253, 282, 302 |
| BslFI | GGGAC | 1 cut(s) | 43 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 42, 130, 252, 301, 312 |
| BsmAI | GTCTC | 1 cut(s) | 700 |
| BsmBI | CGTCTC | 1 cut(s) | 700 |
| BsmFI | GGGAC | 1 cut(s) | 43 |
| BsmI | GAATGC | 1 cut(s) | 787 |
| BsnI | GGCC | 5 cut(s) | 154, 285, 305, 497, 1035 |
| BsoBI | CYCGRG | 1 cut(s) | 434 |
| Bsp1286I | GDGCHC | 2 cut(s) | 768, 1171 |
| Bsp143I | GATC | 6 cut(s) | 648, 747, 830, 934, 1240, 1252 |
| BspACI | CCGC | 5 cut(s) | 113, 394, 565, 786, 1188 |
| BspANI | GGCC | 5 cut(s) | 154, 285, 305, 497, 1035 |
| BspCNI | CTCAG | 1 cut(s) | 1135 |
| BspDI | ATCGAT | 1 cut(s) | 729 |
| BspHI | TCATGA | 2 cut(s) | 760, 1243 |
| BspLI | GGNNCC | 8 cut(s) | 47, 117, 155, 258, 711, 890, 989, 1048 |
| BspMI | ACCTGC | 2 cut(s) | 186, 370 |
| BspPI | GGATC | 3 cut(s) | 755, 825, 929 |
| BspT107I | GGYRCC | 4 cut(s) | 45, 115, 888, 1046 |
| BsrFI | RCCGGY | 3 cut(s) | 130, 281, 301 |
| BsrI | ACTGG | 2 cut(s) | 114, 155 |
| BssAI | RCCGGY | 3 cut(s) | 130, 281, 301 |
| BssECI | CCNNGG | 2 cut(s) | 36, 834 |
| BssMI | GATC | 6 cut(s) | 648, 747, 830, 934, 1240, 1252 |
| BssNAI | GTATAC | 1 cut(s) | 918 |
| BssNI | GRCGYC | 3 cut(s) | 46, 889, 1047 |
| BssSI | CACGAG | 2 cut(s) | 1170, 1212 |
| Bst1107I | GTATAC | 1 cut(s) | 918 |
| Bst2BI | CACGAG | 2 cut(s) | 1170, 1212 |
| Bst2UI | CCWGG | 2 cut(s) | 97, 446 |
| Bst4CI | ACNGT | 2 cut(s) | 230, 821 |
| Bst6I | CTCTTC | 1 cut(s) | 988 |
| BstACI | GRCGYC | 3 cut(s) | 46, 889, 1047 |
| BstC8I | GCNNGC | 2 cut(s) | 398, 468 |
| BstDEI | CTNAG | 5 cut(s) | 499, 714, 879, 911, 1143 |
| BstDSI | CCRYGG | 1 cut(s) | 834 |
| BstF5I | GGATG | 3 cut(s) | 321, 525, 553 |
| BstH2I | RGCGCY | 3 cut(s) | 49, 892, 1050 |
| BstHHI | GCGC | 3 cut(s) | 48, 891, 1049 |
| BstKTI | GATC | 6 cut(s) | 651, 750, 833, 937, 1243, 1255 |
| BstMAI | GTCTC | 1 cut(s) | 700 |
| BstMBI | GATC | 6 cut(s) | 648, 747, 830, 934, 1240, 1252 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 291, 482, 782, 895, 1196, 1217 |
| BstNI | CCWGG | 2 cut(s) | 97, 446 |
| BstSCI | CCNGG | 5 cut(s) | 36, 95, 181, 252, 444 |
| BstSFI | CTRYAG | 1 cut(s) | 411 |
| BstV2I | GAAGAC | 1 cut(s) | 680 |
| BstX2I | RGATCY | 1 cut(s) | 830 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1043 |
| BstYI | RGATCY | 1 cut(s) | 830 |
| BstZ17I | GTATAC | 1 cut(s) | 918 |
| Bsu15I | ATCGAT | 1 cut(s) | 729 |
| BsuRI | GGCC | 5 cut(s) | 154, 285, 305, 497, 1035 |
| BsuTUI | ATCGAT | 1 cut(s) | 729 |
| BtgI | CCRYGG | 1 cut(s) | 834 |
| BtgZI | GCGATG | 1 cut(s) | 674 |
| BtrI | CACGTC | 1 cut(s) | 451 |
| BtsCI | GGATG | 3 cut(s) | 321, 525, 553 |
| BveI | ACCTGC | 2 cut(s) | 186, 370 |
| Cac8I | GCNNGC | 2 cut(s) | 398, 468 |
| CciI | TCATGA | 2 cut(s) | 760, 1243 |
| CfoI | GCGC | 3 cut(s) | 48, 891, 1049 |
| Cfr10I | RCCGGY | 3 cut(s) | 130, 281, 301 |
| Cfr13I | GGNCC | 1 cut(s) | 153 |
| ClaI | ATCGAT | 1 cut(s) | 729 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 474, 509 |
| CviAII | CATG | 5 cut(s) | 125, 761, 797, 1037, 1244 |
| DdeI | CTNAG | 5 cut(s) | 499, 714, 879, 911, 1143 |
| DinI | GGCGCC | 3 cut(s) | 47, 890, 1048 |
| DpnI | GATC | 6 cut(s) | 650, 749, 832, 936, 1242, 1254 |
| DpnII | GATC | 6 cut(s) | 648, 747, 830, 934, 1240, 1252 |
| DraIII | CACNNNGTG | 1 cut(s) | 1228 |
| EaeI | YGGCCR | 3 cut(s) | 283, 303, 1033 |
| Eam1104I | CTCTTC | 1 cut(s) | 988 |
| EarI | CTCTTC | 1 cut(s) | 988 |
| EciI | GGCGGA | 1 cut(s) | 383 |
| Ecl136II | GAGCTC | 2 cut(s) | 766, 1169 |
| Eco24I | GRGCYC | 2 cut(s) | 768, 1171 |
| Eco32I | GATATC | 2 cut(s) | 371, 391 |
| Eco53kI | GAGCTC | 2 cut(s) | 766, 1169 |
| Eco88I | CYCGRG | 1 cut(s) | 434 |
| EcoICRI | GAGCTC | 2 cut(s) | 766, 1169 |
| EcoRI | GAATTC | 1 cut(s) | 632 |
| EcoRII | CCWGG | 2 cut(s) | 95, 444 |
| EcoRV | GATATC | 2 cut(s) | 371, 391 |
| EcoT38I | GRGCYC | 2 cut(s) | 768, 1171 |
| EgeI | GGCGCC | 3 cut(s) | 47, 890, 1048 |
| EheI | GGCGCC | 3 cut(s) | 47, 890, 1048 |
| Esp3I | CGTCTC | 1 cut(s) | 700 |
| FaeI | CATG | 5 cut(s) | 128, 764, 800, 1040, 1247 |
| FaqI | GGGAC | 1 cut(s) | 43 |
| FatI | CATG | 5 cut(s) | 124, 760, 796, 1036, 1243 |
| FauNDI | CATATG | 1 cut(s) | 543 |
| FblI | GTMKAC | 1 cut(s) | 917 |
| Fnu4HI | GCNGC | 1 cut(s) | 786 |
| FokI | GGATG | 3 cut(s) | 328, 512, 560 |
| FriOI | GRGCYC | 2 cut(s) | 768, 1171 |
| Fsp4HI | GCNGC | 1 cut(s) | 786 |
| FspBI | CTAG | 4 cut(s) | 59, 135, 441, 1256 |
| GlaI | GCGC | 3 cut(s) | 47, 890, 1048 |
| GluI | GCNGC | 1 cut(s) | 786 |
| GsuI | CTGGAG | 1 cut(s) | 79 |
| HaeII | RGCGCY | 3 cut(s) | 49, 892, 1050 |
| HaeIII | GGCC | 5 cut(s) | 154, 285, 305, 497, 1035 |
| HapII | CCGG | 6 cut(s) | 38, 131, 182, 253, 282, 302 |
| HhaI | GCGC | 3 cut(s) | 48, 891, 1049 |
| Hin1I | GRCGYC | 3 cut(s) | 46, 889, 1047 |
| Hin1II | CATG | 5 cut(s) | 128, 764, 800, 1040, 1247 |
| Hin6I | GCGC | 3 cut(s) | 46, 889, 1047 |
| HinP1I | GCGC | 3 cut(s) | 46, 889, 1047 |
| HindIII | AAGCTT | 1 cut(s) | 474 |
| HpaII | CCGG | 6 cut(s) | 38, 131, 182, 253, 282, 302 |
| HphI | GGTGA | 3 cut(s) | 167, 265, 1177 |
| Hpy166II | GTNNAC | 4 cut(s) | 188, 203, 918, 1001 |
| Hpy188I | TCNGA | 4 cut(s) | 234, 856, 934, 1144 |
| Hpy8I | GTNNAC | 4 cut(s) | 188, 203, 918, 1001 |
| Hpy99I | CGWCG | 1 cut(s) | 74 |
| HpyAV | CCTTC | 3 cut(s) | 59, 697, 953 |
| HpyCH4III | ACNGT | 2 cut(s) | 230, 821 |
| HpyCH4IV | ACGT | 2 cut(s) | 450, 1003 |
| HpyCH4V | TGCA | 2 cut(s) | 701, 740 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 291, 482, 782, 895, 1196, 1217 |
| HpyF3I | CTNAG | 5 cut(s) | 499, 714, 879, 911, 1143 |
| HpySE526I | ACGT | 2 cut(s) | 450, 1003 |
| Hsp92I | GRCGYC | 3 cut(s) | 46, 889, 1047 |
| Hsp92II | CATG | 5 cut(s) | 128, 764, 800, 1040, 1247 |
| HspAI | GCGC | 3 cut(s) | 46, 889, 1047 |
| KasI | GGCGCC | 3 cut(s) | 45, 888, 1046 |
| Kzo9I | GATC | 6 cut(s) | 648, 747, 830, 934, 1240, 1252 |
| LmnI | GCTCC | 4 cut(s) | 71, 349, 561, 773 |
| LweI | GCATC | 2 cut(s) | 409, 646 |
| MaeI | CTAG | 4 cut(s) | 59, 135, 441, 1256 |
| MaeII | ACGT | 2 cut(s) | 450, 1003 |
| MaeIII | GTNAC | 3 cut(s) | 320, 962, 1183 |
| MalI | GATC | 6 cut(s) | 650, 749, 832, 936, 1242, 1254 |
| MboI | GATC | 6 cut(s) | 648, 747, 830, 934, 1240, 1252 |
| MboII | GAAGA | 8 cut(s) | 205, 214, 685, 826, 1005, 1187, 1250, 1259 |
| MfeI | CAATTG | 1 cut(s) | 307 |
| MflI | RGATCY | 1 cut(s) | 830 |
| MhlI | GDGCHC | 2 cut(s) | 768, 1171 |
| MlsI | TGGCCA | 1 cut(s) | 1035 |
| MluCI | AATT | 7 cut(s) | 207, 218, 307, 332, 632, 823, 862 |
| MluNI | TGGCCA | 1 cut(s) | 1035 |
| Mly113I | GGCGCC | 3 cut(s) | 46, 889, 1047 |
| MlyI | GAGTC | 5 cut(s) | 25, 109, 529, 670, 1070 |
| MnlI | CCTC | 7 cut(s) | 306, 496, 572, 878, 989, 1009, 1013 |
| Mox20I | TGGCCA | 1 cut(s) | 1035 |
| MscI | TGGCCA | 1 cut(s) | 1035 |
| MseI | TTAA | 3 cut(s) | 618, 626, 1059 |
| MslI | CAYNNNNRTG | 4 cut(s) | 530, 546, 1041, 1248 |
| Msp20I | TGGCCA | 1 cut(s) | 1035 |
| MspA1I | CMGCKG | 1 cut(s) | 788 |
| MspI | CCGG | 6 cut(s) | 38, 131, 182, 253, 282, 302 |
| MspR9I | CCNGG | 5 cut(s) | 38, 97, 183, 254, 446 |
| MunI | CAATTG | 1 cut(s) | 307 |
| Mva1269I | GAATGC | 1 cut(s) | 787 |
| MvaI | CCWGG | 2 cut(s) | 97, 446 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 291, 482, 782, 895, 1196, 1217 |
| NarI | GGCGCC | 3 cut(s) | 46, 889, 1047 |
| NciI | CCSGG | 3 cut(s) | 38, 183, 254 |
| NdeI | CATATG | 1 cut(s) | 543 |
| NdeII | GATC | 6 cut(s) | 648, 747, 830, 934, 1240, 1252 |
| NlaIII | CATG | 5 cut(s) | 128, 764, 800, 1040, 1247 |
| NlaIV | GGNNCC | 8 cut(s) | 47, 117, 155, 258, 711, 890, 989, 1048 |
| NmuCI | GTSAC | 1 cut(s) | 1183 |
| PaeR7I | CTCGAG | 1 cut(s) | 434 |
| PagI | TCATGA | 2 cut(s) | 760, 1243 |
| PaqCI | CACCTGC | 1 cut(s) | 186 |
| PctI | GAATGC | 1 cut(s) | 787 |
| PfeI | GAWTC | 6 cut(s) | 249, 417, 430, 551, 726, 857 |
| PfoI | TCCNGGA | 2 cut(s) | 95, 252 |
| PkrI | GCNGC | 1 cut(s) | 787 |
| PleI | GAGTC | 5 cut(s) | 25, 108, 529, 670, 1070 |
| PluTI | GGCGCC | 3 cut(s) | 49, 892, 1050 |
| PpsI | GAGTC | 5 cut(s) | 25, 108, 529, 670, 1070 |
| Psp124BI | GAGCTC | 2 cut(s) | 768, 1171 |
| Psp6I | CCWGG | 2 cut(s) | 95, 444 |
| PspGI | CCWGG | 2 cut(s) | 95, 444 |
| PspN4I | GGNNCC | 8 cut(s) | 47, 117, 155, 258, 711, 890, 989, 1048 |
| PspPI | GGNCC | 1 cut(s) | 153 |
| PsuI | RGATCY | 1 cut(s) | 830 |
| RseI | CAYNNNNRTG | 4 cut(s) | 530, 546, 1041, 1248 |
| SacI | GAGCTC | 2 cut(s) | 768, 1171 |
| SaqAI | TTAA | 3 cut(s) | 618, 626, 1059 |
| SatI | GCNGC | 1 cut(s) | 786 |
| Sau3AI | GATC | 6 cut(s) | 648, 747, 830, 934, 1240, 1252 |
| Sau96I | GGNCC | 1 cut(s) | 153 |
| SchI | GAGTC | 5 cut(s) | 25, 109, 529, 670, 1070 |
| ScrFI | CCNGG | 5 cut(s) | 38, 97, 183, 254, 446 |
| SduI | GDGCHC | 2 cut(s) | 768, 1171 |
| SfaNI | GCATC | 2 cut(s) | 409, 646 |
| SfcI | CTRYAG | 1 cut(s) | 411 |
| SfoI | GGCGCC | 3 cut(s) | 47, 890, 1048 |
| Sfr274I | CTCGAG | 1 cut(s) | 434 |
| SlaI | CTCGAG | 1 cut(s) | 434 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 530, 546, 1041, 1248 |
| SmlI | CTYRAG | 3 cut(s) | 404, 434, 471 |
| SmoI | CTYRAG | 3 cut(s) | 404, 434, 471 |
| Sse9I | AATT | 7 cut(s) | 207, 218, 307, 332, 632, 823, 862 |
| SsiI | CCGC | 5 cut(s) | 113, 394, 565, 786, 1188 |
| SspDI | GGCGCC | 3 cut(s) | 45, 888, 1046 |
| SspMI | CTAG | 4 cut(s) | 59, 135, 441, 1256 |
| SstI | GAGCTC | 2 cut(s) | 768, 1171 |
| StyD4I | CCNGG | 5 cut(s) | 36, 95, 181, 252, 444 |
| TaaI | ACNGT | 2 cut(s) | 230, 821 |
| TaiI | ACGT | 2 cut(s) | 453, 1006 |
| TaqI | TCGA | 8 cut(s) | 146, 435, 602, 724, 729, 827, 1107, 1129 |
| TasI | AATT | 7 cut(s) | 207, 218, 307, 332, 632, 823, 862 |
| TauI | GCSGC | 1 cut(s) | 788 |
| TfiI | GAWTC | 6 cut(s) | 249, 417, 430, 551, 726, 857 |
| Tru1I | TTAA | 3 cut(s) | 618, 626, 1059 |
| Tru9I | TTAA | 3 cut(s) | 618, 626, 1059 |
| TseFI | GTSAC | 1 cut(s) | 1183 |
| Tsp45I | GTSAC | 1 cut(s) | 1183 |
| TspDTI | ATGAA | 4 cut(s) | 141, 749, 794, 1260 |
| TspGWI | ACGGA | 5 cut(s) | 58, 188, 760, 823, 1000 |
| XapI | RAATTY | 2 cut(s) | 218, 632 |
| XbaI | TCTAGA | 1 cut(s) | 1255 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 22 |
| XhoI | CTCGAG | 1 cut(s) | 434 |
| XmiI | GTMKAC | 1 cut(s) | 917 |
| XspI | CTAG | 4 cut(s) | 59, 135, 441, 1256 |