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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 582 |
| AclWI | GGATC | 2 cut(s) | 41, 366 |
| AcoI | YGGCCR | 4 cut(s) | 83, 151, 234, 309 |
| AcsI | RAATTY | 2 cut(s) | 419, 838 |
| AcuI | CTGAAG | 2 cut(s) | 709, 886 |
| AcyI | GRCGYC | 1 cut(s) | 333 |
| AfaI | GTAC | 3 cut(s) | 72, 486, 1154 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 211, 214 |
| AgsI | TTSAA | 2 cut(s) | 262, 1282 |
| AjiI | CACGTC | 1 cut(s) | 1042 |
| AjnI | CCWGG | 3 cut(s) | 156, 643, 1035 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1194, 1226 |
| AluBI | AGCT | 5 cut(s) | 29, 442, 803, 1061, 1067 |
| AluI | AGCT | 5 cut(s) | 29, 442, 803, 1061, 1067 |
| Alw21I | GWGCWC | 1 cut(s) | 525 |
| Alw26I | GTCTC | 3 cut(s) | 130, 319, 1198 |
| AlwI | GGATC | 2 cut(s) | 41, 366 |
| Ama87I | CYCGRG | 1 cut(s) | 1025 |
| AoxI | GGCC | 5 cut(s) | 83, 151, 234, 309, 513 |
| ApeKI | GCWGC | 3 cut(s) | 392, 618, 637 |
| ApoI | RAATTY | 2 cut(s) | 419, 838 |
| AspLEI | GCGC | 2 cut(s) | 713, 742 |
| AspS9I | GGNCC | 2 cut(s) | 255, 514 |
| AsuHPI | GGTGA | 2 cut(s) | 544, 578 |
| AsuNHI | GCTAGC | 1 cut(s) | 598 |
| AvaI | CYCGRG | 1 cut(s) | 1025 |
| AvaII | GGWCC | 1 cut(s) | 255 |
| BauI | CACGAG | 1 cut(s) | 518 |
| BbsI | GAAGAC | 1 cut(s) | 1179 |
| Bbv12I | GWGCWC | 1 cut(s) | 525 |
| BbvI | GCAGC | 3 cut(s) | 404, 630, 649 |
| BccI | CCATC | 4 cut(s) | 779, 998, 1121, 1248 |
| BceAI | ACGGC | 4 cut(s) | 228, 241, 296, 461 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 616, 650, 719, 753 |
| BciT130I | CCWGG | 3 cut(s) | 158, 645, 1037 |
| BciVI | GTATCC | 1 cut(s) | 1009 |
| BcoDI | GTCTC | 3 cut(s) | 130, 319, 1198 |
| BfaI | CTAG | 6 cut(s) | 372, 449, 599, 779, 1032, 1244 |
| BfmI | CTRYAG | 2 cut(s) | 271, 635 |
| BfuI | GTATCC | 1 cut(s) | 1009 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1094 |
| BisI | GCNGC | 5 cut(s) | 229, 393, 619, 638, 649 |
| BlsI | GCNGC | 5 cut(s) | 230, 394, 620, 639, 650 |
| BmcAI | AGTACT | 1 cut(s) | 486 |
| Bme1390I | CCNGG | 3 cut(s) | 158, 645, 1037 |
| Bme18I | GGWCC | 1 cut(s) | 255 |
| BmeT110I | CYCGRG | 1 cut(s) | 1025 |
| BmgBI | CACGTC | 1 cut(s) | 1042 |
| BmgT120I | GGNCC | 2 cut(s) | 255, 514 |
| BmiI | GGNNCC | 1 cut(s) | 256 |
| BmrFI | CCNGG | 3 cut(s) | 158, 645, 1037 |
| BmrI | ACTGGG | 1 cut(s) | 574 |
| BmsI | GCATC | 6 cut(s) | 184, 258, 630, 649, 660, 1000 |
| BmtI | GCTAGC | 1 cut(s) | 602 |
| BmuI | ACTGGG | 1 cut(s) | 574 |
| BpiI | GAAGAC | 1 cut(s) | 1179 |
| BpmI | CTGGAG | 1 cut(s) | 1133 |
| BpuEI | CTTGAG | 3 cut(s) | 398, 980, 1047 |
| BsaHI | GRCGYC | 1 cut(s) | 333 |
| BsaI | GGTCTC | 1 cut(s) | 1198 |
| BsaJI | CCNNGG | 3 cut(s) | 157, 210, 354 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 211, 214 |
| Bse118I | RCCGGY | 2 cut(s) | 85, 329 |
| Bse1I | ACTGG | 3 cut(s) | 580, 955, 1150 |
| Bse3DI | GCAATG | 1 cut(s) | 437 |
| BseBI | CCWGG | 3 cut(s) | 158, 645, 1037 |
| BseDI | CCNNGG | 3 cut(s) | 157, 210, 354 |
| BseGI | GGATG | 5 cut(s) | 640, 651, 912, 1116, 1144 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 211, 214 |
| BseMI | GCAATG | 1 cut(s) | 437 |
| BseMII | CTCAG | 1 cut(s) | 847 |
| BseNI | ACTGG | 3 cut(s) | 580, 955, 1150 |
| BseRI | GAGGAG | 3 cut(s) | 102, 105, 177 |
| BseX3I | CGGCCG | 1 cut(s) | 309 |
| BseXI | GCAGC | 3 cut(s) | 404, 630, 649 |
| BseYI | CCCAGC | 1 cut(s) | 606 |
| Bsh1285I | CGRYCG | 2 cut(s) | 312, 824 |
| BshFI | GGCC | 5 cut(s) | 85, 153, 236, 311, 515 |
| BsiEI | CGRYCG | 2 cut(s) | 312, 824 |
| BsiHKAI | GWGCWC | 1 cut(s) | 525 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1025 |
| BsiSI | CCGG | 6 cut(s) | 86, 150, 237, 308, 318, 330 |
| BslFI | GGGAC | 1 cut(s) | 175 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 211, 214 |
| BsmAI | GTCTC | 3 cut(s) | 130, 319, 1198 |
| BsmBI | CGTCTC | 2 cut(s) | 130, 319 |
| BsmFI | GGGAC | 1 cut(s) | 175 |
| BsnI | GGCC | 5 cut(s) | 85, 153, 236, 311, 515 |
| Bso31I | GGTCTC | 1 cut(s) | 1198 |
| BsoBI | CYCGRG | 1 cut(s) | 1025 |
| Bsp1286I | GDGCHC | 1 cut(s) | 525 |
| Bsp143I | GATC | 3 cut(s) | 46, 358, 821 |
| Bsp68I | TCGCGA | 3 cut(s) | 438, 541, 626 |
| BspANI | GGCC | 5 cut(s) | 85, 153, 236, 311, 515 |
| BspCNI | CTCAG | 1 cut(s) | 846 |
| BspLI | GGNNCC | 1 cut(s) | 256 |
| BspMAI | CTGCAG | 1 cut(s) | 639 |
| BspOI | GCTAGC | 1 cut(s) | 602 |
| BspPI | GGATC | 2 cut(s) | 41, 366 |
| BspTNI | GGTCTC | 1 cut(s) | 1198 |
| BsrDI | GCAATG | 1 cut(s) | 437 |
| BsrFI | RCCGGY | 2 cut(s) | 85, 329 |
| BsrI | ACTGG | 3 cut(s) | 580, 955, 1150 |
| BssAI | RCCGGY | 2 cut(s) | 85, 329 |
| BssECI | CCNNGG | 3 cut(s) | 157, 210, 354 |
| BssMI | GATC | 3 cut(s) | 46, 358, 821 |
| BssNI | GRCGYC | 1 cut(s) | 333 |
| BssSI | CACGAG | 1 cut(s) | 518 |
| BssT1I | CCWWGG | 1 cut(s) | 354 |
| Bst2BI | CACGAG | 1 cut(s) | 518 |
| Bst2UI | CCWGG | 3 cut(s) | 158, 645, 1037 |
| Bst4CI | ACNGT | 2 cut(s) | 272, 1051 |
| Bst6I | CTCTTC | 2 cut(s) | 141, 728 |
| BstACI | GRCGYC | 1 cut(s) | 333 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 501 |
| BstDEI | CTNAG | 5 cut(s) | 63, 74, 792, 833, 1090 |
| BstDSI | CCRYGG | 1 cut(s) | 210 |
| BstEII | GGTNACC | 1 cut(s) | 857 |
| BstF5I | GGATG | 5 cut(s) | 640, 651, 912, 1116, 1144 |
| BstHHI | GCGC | 2 cut(s) | 713, 742 |
| BstKTI | GATC | 3 cut(s) | 49, 361, 824 |
| BstMAI | GTCTC | 3 cut(s) | 130, 319, 1198 |
| BstMBI | GATC | 3 cut(s) | 46, 358, 821 |
| BstMCI | CGRYCG | 2 cut(s) | 312, 824 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 150, 288, 501, 505, 809, 1073, 1094 |
| BstNI | CCWGG | 3 cut(s) | 158, 645, 1037 |
| BstPI | GGTNACC | 1 cut(s) | 857 |
| BstSCI | CCNGG | 3 cut(s) | 156, 643, 1035 |
| BstSFI | CTRYAG | 2 cut(s) | 271, 635 |
| BstV1I | GCAGC | 3 cut(s) | 404, 630, 649 |
| BstV2I | GAAGAC | 1 cut(s) | 1179 |
| BstZI | CGGCCG | 1 cut(s) | 309 |
| BsuI | GTATCC | 1 cut(s) | 1009 |
| BsuRI | GGCC | 5 cut(s) | 85, 153, 236, 311, 515 |
| BtgI | CCRYGG | 1 cut(s) | 210 |
| BtgZI | GCGATG | 1 cut(s) | 607 |
| BtrI | CACGTC | 1 cut(s) | 1042 |
| BtsCI | GGATG | 5 cut(s) | 640, 651, 912, 1116, 1144 |
| BtsIMutI | CAGTG | 2 cut(s) | 268, 587 |
| BtuMI | TCGCGA | 3 cut(s) | 438, 541, 626 |
| CfoI | GCGC | 2 cut(s) | 713, 742 |
| Cfr10I | RCCGGY | 2 cut(s) | 85, 329 |
| Cfr13I | GGNCC | 2 cut(s) | 255, 514 |
| CseI | GACGC | 3 cut(s) | 112, 255, 322 |
| Csp6I | GTAC | 3 cut(s) | 71, 485, 1153 |
| CviAII | CATG | 1 cut(s) | 470 |
| CviQI | GTAC | 3 cut(s) | 71, 485, 1153 |
| DdeI | CTNAG | 5 cut(s) | 63, 74, 792, 833, 1090 |
| DpnI | GATC | 3 cut(s) | 48, 360, 823 |
| DpnII | GATC | 3 cut(s) | 46, 358, 821 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 582 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 582 |
| EaeI | YGGCCR | 4 cut(s) | 83, 151, 234, 309 |
| EagI | CGGCCG | 1 cut(s) | 309 |
| Eam1104I | CTCTTC | 2 cut(s) | 141, 728 |
| EarI | CTCTTC | 2 cut(s) | 141, 728 |
| EciI | GGCGGA | 1 cut(s) | 974 |
| EclXI | CGGCCG | 1 cut(s) | 309 |
| Eco130I | CCWWGG | 1 cut(s) | 354 |
| Eco31I | GGTCTC | 1 cut(s) | 1198 |
| Eco32I | GATATC | 1 cut(s) | 982 |
| Eco47I | GGWCC | 1 cut(s) | 255 |
| Eco52I | CGGCCG | 1 cut(s) | 309 |
| Eco57I | CTGAAG | 2 cut(s) | 709, 886 |
| Eco88I | CYCGRG | 1 cut(s) | 1025 |
| Eco91I | GGTNACC | 1 cut(s) | 857 |
| EcoO109I | RGGNCCY | 1 cut(s) | 255 |
| EcoO65I | GGTNACC | 1 cut(s) | 857 |
| EcoRII | CCWGG | 3 cut(s) | 156, 643, 1035 |
| EcoRV | GATATC | 1 cut(s) | 982 |
| EcoT14I | CCWWGG | 1 cut(s) | 354 |
| ErhI | CCWWGG | 1 cut(s) | 354 |
| Esp3I | CGTCTC | 2 cut(s) | 130, 319 |
| FaeI | CATG | 1 cut(s) | 473 |
| FaiI | YATR | 7 cut(s) | 82, 417, 471, 1134, 1136, 1163, 1260 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 488, 520 |
| FaqI | GGGAC | 1 cut(s) | 175 |
| FatI | CATG | 1 cut(s) | 469 |
| FauI | CCCGC | 5 cut(s) | 128, 700, 753, 764, 772 |
| FauNDI | CATATG | 1 cut(s) | 1134 |
| Fnu4HI | GCNGC | 5 cut(s) | 229, 393, 619, 638, 649 |
| FokI | GGATG | 5 cut(s) | 627, 638, 919, 1103, 1151 |
| Fsp4HI | GCNGC | 5 cut(s) | 229, 393, 619, 638, 649 |
| FspBI | CTAG | 6 cut(s) | 372, 449, 599, 779, 1032, 1244 |
| GlaI | GCGC | 2 cut(s) | 712, 741 |
| GluI | GCNGC | 5 cut(s) | 229, 393, 619, 638, 649 |
| GsaI | CCCAGC | 1 cut(s) | 610 |
| GsuI | CTGGAG | 1 cut(s) | 1133 |
| HaeIII | GGCC | 5 cut(s) | 85, 153, 236, 311, 515 |
| HapII | CCGG | 6 cut(s) | 86, 150, 237, 308, 318, 330 |
| HgaI | GACGC | 3 cut(s) | 112, 255, 322 |
| HhaI | GCGC | 2 cut(s) | 713, 742 |
| Hin1I | GRCGYC | 1 cut(s) | 333 |
| Hin1II | CATG | 1 cut(s) | 473 |
| Hin6I | GCGC | 2 cut(s) | 711, 740 |
| HinP1I | GCGC | 2 cut(s) | 711, 740 |
| HincII | GTYRAC | 1 cut(s) | 287 |
| HindII | GTYRAC | 1 cut(s) | 287 |
| HindIII | AAGCTT | 1 cut(s) | 1065 |
| HinfI | GANTC | 9 cut(s) | 184, 304, 406, 549, 1008, 1021, 1126, 1142, 1226 |
| HpaII | CCGG | 6 cut(s) | 86, 150, 237, 308, 318, 330 |
| HphI | GGTGA | 2 cut(s) | 544, 578 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 287 |
| Hpy188I | TCNGA | 3 cut(s) | 303, 836, 958 |
| Hpy188III | TCNNGA | 7 cut(s) | 437, 540, 625, 904, 1025, 1238, 1292 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 287 |
| Hpy99I | CGWCG | 2 cut(s) | 249, 338 |
| HpyAV | CCTTC | 5 cut(s) | 332, 449, 519, 910, 1176 |
| HpyCH4III | ACNGT | 2 cut(s) | 272, 1051 |
| HpyCH4IV | ACGT | 2 cut(s) | 1041, 1218 |
| HpyCH4V | TGCA | 8 cut(s) | 144, 392, 469, 495, 637, 659, 717, 812 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 150, 288, 501, 505, 809, 1073, 1094 |
| HpyF3I | CTNAG | 5 cut(s) | 63, 74, 792, 833, 1090 |
| HpySE526I | ACGT | 2 cut(s) | 1041, 1218 |
| Hsp92I | GRCGYC | 1 cut(s) | 333 |
| Hsp92II | CATG | 1 cut(s) | 473 |
| HspAI | GCGC | 2 cut(s) | 711, 740 |
| Kzo9I | GATC | 3 cut(s) | 46, 358, 821 |
| LmnI | GCTCC | 3 cut(s) | 875, 940, 1152 |
| Lsp1109I | GCAGC | 3 cut(s) | 404, 630, 649 |
| LweI | GCATC | 6 cut(s) | 184, 258, 630, 649, 660, 1000 |
| MaeI | CTAG | 6 cut(s) | 372, 449, 599, 779, 1032, 1244 |
| MaeII | ACGT | 2 cut(s) | 1041, 1218 |
| MaeIII | GTNAC | 5 cut(s) | 88, 217, 584, 857, 1223 |
| MalI | GATC | 3 cut(s) | 48, 360, 823 |
| MboI | GATC | 3 cut(s) | 46, 358, 821 |
| MboII | GAAGA | 7 cut(s) | 128, 415, 423, 715, 1181, 1184, 1214 |
| MhlI | GDGCHC | 1 cut(s) | 525 |
| MluCI | AATT | 5 cut(s) | 32, 419, 838, 886, 923 |
| MlyI | GAGTC | 4 cut(s) | 178, 543, 1120, 1220 |
| MmeI | TCCRAC | 3 cut(s) | 161, 225, 841 |
| MseI | TTAA | 1 cut(s) | 912 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1121, 1137 |
| MspI | CCGG | 6 cut(s) | 86, 150, 237, 308, 318, 330 |
| MspR9I | CCNGG | 3 cut(s) | 158, 645, 1037 |
| MvaI | CCWGG | 3 cut(s) | 158, 645, 1037 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 150, 288, 501, 505, 809, 1073, 1094 |
| NdeI | CATATG | 1 cut(s) | 1134 |
| NdeII | GATC | 3 cut(s) | 46, 358, 821 |
| NheI | GCTAGC | 1 cut(s) | 598 |
| NlaIII | CATG | 1 cut(s) | 473 |
| NlaIV | GGNNCC | 1 cut(s) | 256 |
| NmuCI | GTSAC | 2 cut(s) | 584, 1223 |
| NruI | TCGCGA | 3 cut(s) | 438, 541, 626 |
| PaeR7I | CTCGAG | 1 cut(s) | 1025 |
| PfeI | GAWTC | 5 cut(s) | 304, 406, 1008, 1021, 1142 |
| PkrI | GCNGC | 5 cut(s) | 230, 394, 620, 639, 650 |
| Ple19I | CGATCG | 1 cut(s) | 824 |
| PleI | GAGTC | 4 cut(s) | 178, 543, 1120, 1220 |
| PpsI | GAGTC | 4 cut(s) | 178, 543, 1120, 1220 |
| PpuMI | RGGWCCY | 1 cut(s) | 255 |
| Psp5II | RGGWCCY | 1 cut(s) | 255 |
| Psp6I | CCWGG | 3 cut(s) | 156, 643, 1035 |
| PspEI | GGTNACC | 1 cut(s) | 857 |
| PspFI | CCCAGC | 1 cut(s) | 606 |
| PspGI | CCWGG | 3 cut(s) | 156, 643, 1035 |
| PspN4I | GGNNCC | 1 cut(s) | 256 |
| PspPI | GGNCC | 2 cut(s) | 255, 514 |
| PspPPI | RGGWCCY | 1 cut(s) | 255 |
| PstI | CTGCAG | 1 cut(s) | 639 |
| PvuI | CGATCG | 1 cut(s) | 824 |
| RruI | TCGCGA | 3 cut(s) | 438, 541, 626 |
| RsaI | GTAC | 3 cut(s) | 72, 486, 1154 |
| RsaNI | GTAC | 3 cut(s) | 71, 485, 1153 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1121, 1137 |
| SaqAI | TTAA | 1 cut(s) | 912 |
| SatI | GCNGC | 5 cut(s) | 229, 393, 619, 638, 649 |
| Sau3AI | GATC | 3 cut(s) | 46, 358, 821 |
| Sau96I | GGNCC | 2 cut(s) | 255, 514 |
| ScaI | AGTACT | 1 cut(s) | 486 |
| SchI | GAGTC | 4 cut(s) | 178, 543, 1120, 1220 |
| ScrFI | CCNGG | 3 cut(s) | 158, 645, 1037 |
| SduI | GDGCHC | 1 cut(s) | 525 |
| SfaNI | GCATC | 6 cut(s) | 184, 258, 630, 649, 660, 1000 |
| SfcI | CTRYAG | 2 cut(s) | 271, 635 |
| Sfr274I | CTCGAG | 1 cut(s) | 1025 |
| SinI | GGWCC | 1 cut(s) | 255 |
| SlaI | CTCGAG | 1 cut(s) | 1025 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1121, 1137 |
| SmlI | CTYRAG | 4 cut(s) | 377, 995, 1025, 1062 |
| SmoI | CTYRAG | 4 cut(s) | 377, 995, 1025, 1062 |
| Sse9I | AATT | 5 cut(s) | 32, 419, 838, 886, 923 |
| SspMI | CTAG | 6 cut(s) | 372, 449, 599, 779, 1032, 1244 |
| StyD4I | CCNGG | 3 cut(s) | 156, 643, 1035 |
| StyI | CCWWGG | 1 cut(s) | 354 |
| TaaI | ACNGT | 2 cut(s) | 272, 1051 |
| TaiI | ACGT | 2 cut(s) | 1044, 1221 |
| TaqI | TCGA | 5 cut(s) | 336, 409, 824, 1026, 1200 |
| TasI | AATT | 5 cut(s) | 32, 419, 838, 886, 923 |
| TatI | WGTACW | 2 cut(s) | 70, 484 |
| TauI | GCSGC | 2 cut(s) | 231, 651 |
| TfiI | GAWTC | 5 cut(s) | 304, 406, 1008, 1021, 1142 |
| Tru1I | TTAA | 1 cut(s) | 912 |
| Tru9I | TTAA | 1 cut(s) | 912 |
| TscAI | CASTG | 2 cut(s) | 275, 587 |
| TseFI | GTSAC | 2 cut(s) | 584, 1223 |
| TseI | GCWGC | 3 cut(s) | 392, 618, 637 |
| Tsp45I | GTSAC | 2 cut(s) | 584, 1223 |
| TspDTI | ATGAA | 5 cut(s) | 86, 432, 468, 1178, 1182 |
| TspGWI | ACGGA | 2 cut(s) | 39, 1211 |
| TspRI | CASTG | 2 cut(s) | 275, 587 |
| VpaK11BI | GGWCC | 1 cut(s) | 255 |
| XapI | RAATTY | 2 cut(s) | 419, 838 |
| XhoI | CTCGAG | 1 cut(s) | 1025 |
| XspI | CTAG | 6 cut(s) | 372, 449, 599, 779, 1032, 1244 |
| ZrmI | AGTACT | 1 cut(s) | 486 |