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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 588, 764 |
| AccII | CGCG | 1 cut(s) | 573 |
| AccIII | TCCGGA | 1 cut(s) | 553 |
| AciI | CCGC | 4 cut(s) | 34, 265, 685, 906 |
| AclWI | GGATC | 3 cut(s) | 455, 525, 775 |
| AcsI | RAATTY | 1 cut(s) | 332 |
| AcyI | GRCGYC | 2 cut(s) | 589, 765 |
| AfaI | GTAC | 1 cut(s) | 156 |
| AgsI | TTSAA | 2 cut(s) | 280, 802 |
| AjiI | CACGTC | 1 cut(s) | 91 |
| AjnI | CCWGG | 2 cut(s) | 60, 84 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 192, 224 |
| AluBI | AGCT | 5 cut(s) | 110, 466, 476, 887, 938 |
| AluI | AGCT | 5 cut(s) | 110, 466, 476, 887, 938 |
| Alw21I | GWGCWC | 2 cut(s) | 468, 889 |
| Alw26I | GTCTC | 2 cut(s) | 196, 400 |
| AlwI | GGATC | 3 cut(s) | 455, 525, 775 |
| Ama87I | CYCGRG | 1 cut(s) | 74 |
| Aor13HI | TCCGGA | 1 cut(s) | 553 |
| AoxI | GGCC | 1 cut(s) | 48 |
| ApeKI | GCWGC | 1 cut(s) | 134 |
| ApoI | RAATTY | 1 cut(s) | 332 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 309 |
| AspLEI | GCGC | 3 cut(s) | 575, 591, 767 |
| AspS9I | GGNCC | 1 cut(s) | 653 |
| AsuHPI | GGTGA | 1 cut(s) | 895 |
| AvaI | CYCGRG | 1 cut(s) | 74 |
| AvaII | GGWCC | 1 cut(s) | 653 |
| BanI | GGYRCC | 2 cut(s) | 588, 764 |
| BanII | GRGCYC | 2 cut(s) | 468, 889 |
| BbsI | GAAGAC | 2 cut(s) | 177, 380 |
| Bbv12I | GWGCWC | 2 cut(s) | 468, 889 |
| BbvI | GCAGC | 1 cut(s) | 146 |
| BccI | CCATC | 4 cut(s) | 47, 246, 400, 792 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 419, 453 |
| BciT130I | CCWGG | 2 cut(s) | 62, 86 |
| BciVI | GTATCC | 1 cut(s) | 610 |
| BclI | TGATCA | 1 cut(s) | 862 |
| BcoDI | GTCTC | 2 cut(s) | 196, 400 |
| BfaI | CTAG | 1 cut(s) | 81 |
| BfoI | RGCGCY | 2 cut(s) | 592, 768 |
| BfuI | GTATCC | 1 cut(s) | 610 |
| BisI | GCNGC | 1 cut(s) | 135 |
| BlsI | GCNGC | 1 cut(s) | 136 |
| Bme1390I | CCNGG | 2 cut(s) | 62, 86 |
| Bme18I | GGWCC | 1 cut(s) | 653 |
| BmeT110I | CYCGRG | 1 cut(s) | 74 |
| BmgBI | CACGTC | 1 cut(s) | 91 |
| BmgT120I | GGNCC | 1 cut(s) | 653 |
| BmiI | GGNNCC | 3 cut(s) | 590, 707, 766 |
| BmrFI | CCNGG | 2 cut(s) | 62, 86 |
| BmsI | GCATC | 2 cut(s) | 49, 346 |
| BpiI | GAAGAC | 2 cut(s) | 177, 380 |
| BpuEI | CTTGAG | 2 cut(s) | 29, 96 |
| Bsa29I | ATCGAT | 1 cut(s) | 429 |
| BsaAI | YACGTR | 1 cut(s) | 722 |
| BsaHI | GRCGYC | 2 cut(s) | 589, 765 |
| BsaI | GGTCTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 1 cut(s) | 534 |
| BsaWI | WCCGGW | 1 cut(s) | 553 |
| BseAI | TCCGGA | 1 cut(s) | 553 |
| BseBI | CCWGG | 2 cut(s) | 62, 86 |
| BseCI | ATCGAT | 1 cut(s) | 429 |
| BseDI | CCNNGG | 1 cut(s) | 534 |
| BseGI | GGATG | 2 cut(s) | 216, 504 |
| BseMII | CTCAG | 1 cut(s) | 315 |
| BseXI | GCAGC | 1 cut(s) | 146 |
| Bsh1236I | CGCG | 1 cut(s) | 573 |
| BshFI | GGCC | 1 cut(s) | 50 |
| BshNI | GGYRCC | 2 cut(s) | 588, 764 |
| BshVI | ATCGAT | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 2 cut(s) | 468, 889 |
| BsiHKCI | CYCGRG | 1 cut(s) | 74 |
| BsiSI | CCGG | 1 cut(s) | 554 |
| BsmAI | GTCTC | 2 cut(s) | 196, 400 |
| BsmBI | CGTCTC | 1 cut(s) | 400 |
| BsnI | GGCC | 1 cut(s) | 50 |
| Bso31I | GGTCTC | 1 cut(s) | 196 |
| BsoBI | CYCGRG | 1 cut(s) | 74 |
| Bsp1286I | GDGCHC | 2 cut(s) | 468, 889 |
| Bsp13I | TCCGGA | 1 cut(s) | 553 |
| Bsp143I | GATC | 6 cut(s) | 348, 447, 530, 780, 862, 958 |
| BspACI | CCGC | 4 cut(s) | 34, 265, 685, 906 |
| BspANI | GGCC | 1 cut(s) | 50 |
| BspCNI | CTCAG | 1 cut(s) | 314 |
| BspDI | ATCGAT | 1 cut(s) | 429 |
| BspEI | TCCGGA | 1 cut(s) | 553 |
| BspFNI | CGCG | 1 cut(s) | 573 |
| BspHI | TCATGA | 2 cut(s) | 25, 460 |
| BspLI | GGNNCC | 3 cut(s) | 590, 707, 766 |
| BspPI | GGATC | 3 cut(s) | 455, 525, 775 |
| BspT107I | GGYRCC | 2 cut(s) | 588, 764 |
| BspTNI | GGTCTC | 1 cut(s) | 196 |
| BssECI | CCNNGG | 1 cut(s) | 534 |
| BssMI | GATC | 6 cut(s) | 348, 447, 530, 780, 862, 958 |
| BssNI | GRCGYC | 2 cut(s) | 589, 765 |
| Bst2UI | CCWGG | 2 cut(s) | 62, 86 |
| Bst4CI | ACNGT | 1 cut(s) | 100 |
| BstACI | GRCGYC | 2 cut(s) | 589, 765 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 321 |
| BstBAI | YACGTR | 1 cut(s) | 722 |
| BstC8I | GCNNGC | 2 cut(s) | 38, 108 |
| BstDEI | CTNAG | 6 cut(s) | 139, 301, 414, 579, 611, 777 |
| BstDSI | CCRYGG | 1 cut(s) | 534 |
| BstEII | GGTNACC | 1 cut(s) | 680 |
| BstF5I | GGATG | 2 cut(s) | 216, 504 |
| BstFNI | CGCG | 1 cut(s) | 573 |
| BstH2I | RGCGCY | 2 cut(s) | 592, 768 |
| BstHHI | GCGC | 3 cut(s) | 575, 591, 767 |
| BstKTI | GATC | 6 cut(s) | 351, 450, 533, 783, 865, 961 |
| BstMAI | GTCTC | 2 cut(s) | 196, 400 |
| BstMBI | GATC | 6 cut(s) | 348, 447, 530, 780, 862, 958 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 131, 321, 595, 914 |
| BstNI | CCWGG | 2 cut(s) | 62, 86 |
| BstPI | GGTNACC | 1 cut(s) | 680 |
| BstSCI | CCNGG | 2 cut(s) | 60, 84 |
| BstUI | CGCG | 1 cut(s) | 573 |
| BstV1I | GCAGC | 1 cut(s) | 146 |
| BstV2I | GAAGAC | 2 cut(s) | 177, 380 |
| BstX2I | RGATCY | 2 cut(s) | 530, 780 |
| BstYI | RGATCY | 2 cut(s) | 530, 780 |
| Bsu15I | ATCGAT | 1 cut(s) | 429 |
| BsuI | GTATCC | 1 cut(s) | 610 |
| BsuRI | GGCC | 1 cut(s) | 50 |
| BsuTUI | ATCGAT | 1 cut(s) | 429 |
| BtgI | CCRYGG | 1 cut(s) | 534 |
| BtgZI | GCGATG | 1 cut(s) | 374 |
| BtrI | CACGTC | 1 cut(s) | 91 |
| BtsCI | GGATG | 2 cut(s) | 216, 504 |
| Cac8I | GCNNGC | 2 cut(s) | 38, 108 |
| CciI | TCATGA | 2 cut(s) | 25, 460 |
| CfoI | GCGC | 3 cut(s) | 575, 591, 767 |
| Cfr13I | GGNCC | 1 cut(s) | 653 |
| ClaI | ATCGAT | 1 cut(s) | 429 |
| CseI | GACGC | 1 cut(s) | 803 |
| Csp6I | GTAC | 1 cut(s) | 155 |
| CviAII | CATG | 4 cut(s) | 18, 26, 461, 497 |
| CviQI | GTAC | 1 cut(s) | 155 |
| DdeI | CTNAG | 6 cut(s) | 139, 301, 414, 579, 611, 777 |
| DinI | GGCGCC | 2 cut(s) | 590, 766 |
| DpnI | GATC | 6 cut(s) | 350, 449, 532, 782, 864, 960 |
| DpnII | GATC | 6 cut(s) | 348, 447, 530, 780, 862, 958 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Ecl136II | GAGCTC | 2 cut(s) | 466, 887 |
| Eco24I | GRGCYC | 2 cut(s) | 468, 889 |
| Eco31I | GGTCTC | 1 cut(s) | 196 |
| Eco32I | GATATC | 2 cut(s) | 7, 31 |
| Eco47I | GGWCC | 1 cut(s) | 653 |
| Eco53kI | GAGCTC | 2 cut(s) | 466, 887 |
| Eco88I | CYCGRG | 1 cut(s) | 74 |
| Eco91I | GGTNACC | 1 cut(s) | 680 |
| EcoICRI | GAGCTC | 2 cut(s) | 466, 887 |
| EcoO65I | GGTNACC | 1 cut(s) | 680 |
| EcoRII | CCWGG | 2 cut(s) | 60, 84 |
| EcoRV | GATATC | 2 cut(s) | 7, 31 |
| EcoT38I | GRGCYC | 2 cut(s) | 468, 889 |
| EgeI | GGCGCC | 2 cut(s) | 590, 766 |
| EheI | GGCGCC | 2 cut(s) | 590, 766 |
| Esp3I | CGTCTC | 1 cut(s) | 400 |
| FaeI | CATG | 4 cut(s) | 21, 29, 464, 500 |
| FatI | CATG | 4 cut(s) | 17, 25, 460, 496 |
| FbaI | TGATCA | 1 cut(s) | 862 |
| Fnu4HI | GCNGC | 1 cut(s) | 135 |
| FokI | GGATG | 2 cut(s) | 203, 491 |
| FriOI | GRGCYC | 2 cut(s) | 468, 889 |
| Fsp4HI | GCNGC | 1 cut(s) | 135 |
| FspBI | CTAG | 1 cut(s) | 81 |
| GlaI | GCGC | 3 cut(s) | 574, 590, 766 |
| GluI | GCNGC | 1 cut(s) | 135 |
| HaeII | RGCGCY | 2 cut(s) | 592, 768 |
| HaeIII | GGCC | 1 cut(s) | 50 |
| HapII | CCGG | 1 cut(s) | 554 |
| HgaI | GACGC | 1 cut(s) | 803 |
| HhaI | GCGC | 3 cut(s) | 575, 591, 767 |
| Hin1I | GRCGYC | 2 cut(s) | 589, 765 |
| Hin1II | CATG | 4 cut(s) | 21, 29, 464, 500 |
| Hin6I | GCGC | 3 cut(s) | 573, 589, 765 |
| HinP1I | GCGC | 3 cut(s) | 573, 589, 765 |
| HinfI | GANTC | 7 cut(s) | 57, 70, 143, 224, 376, 426, 557 |
| HpaII | CCGG | 1 cut(s) | 554 |
| HphI | GGTGA | 1 cut(s) | 895 |
| Hpy166II | GTNNAC | 1 cut(s) | 719 |
| Hpy188I | TCNGA | 2 cut(s) | 304, 862 |
| Hpy8I | GTNNAC | 1 cut(s) | 719 |
| HpyAV | CCTTC | 4 cut(s) | 174, 397, 579, 671 |
| HpyCH4III | ACNGT | 1 cut(s) | 100 |
| HpyCH4IV | ACGT | 2 cut(s) | 90, 721 |
| HpyCH4V | TGCA | 3 cut(s) | 17, 401, 440 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 131, 321, 595, 914 |
| HpyF3I | CTNAG | 6 cut(s) | 139, 301, 414, 579, 611, 777 |
| HpySE526I | ACGT | 2 cut(s) | 90, 721 |
| Hsp92I | GRCGYC | 2 cut(s) | 589, 765 |
| Hsp92II | CATG | 4 cut(s) | 21, 29, 464, 500 |
| HspAI | GCGC | 3 cut(s) | 573, 589, 765 |
| KasI | GGCGCC | 2 cut(s) | 588, 764 |
| Kpn2I | TCCGGA | 1 cut(s) | 553 |
| Ksp22I | TGATCA | 1 cut(s) | 862 |
| Kzo9I | GATC | 6 cut(s) | 348, 447, 530, 780, 862, 958 |
| LmnI | GCTCC | 1 cut(s) | 473 |
| Lsp1109I | GCAGC | 1 cut(s) | 146 |
| LweI | GCATC | 2 cut(s) | 49, 346 |
| MaeI | CTAG | 1 cut(s) | 81 |
| MaeII | ACGT | 2 cut(s) | 90, 721 |
| MaeIII | GTNAC | 3 cut(s) | 221, 680, 901 |
| MalI | GATC | 6 cut(s) | 350, 449, 532, 782, 864, 960 |
| MboI | GATC | 6 cut(s) | 348, 447, 530, 780, 862, 958 |
| MboII | GAAGA | 7 cut(s) | 179, 182, 212, 385, 526, 968, 977 |
| MflI | RGATCY | 2 cut(s) | 530, 780 |
| MhlI | GDGCHC | 2 cut(s) | 468, 889 |
| MluCI | AATT | 4 cut(s) | 332, 523, 562, 670 |
| Mly113I | GGCGCC | 2 cut(s) | 589, 765 |
| MlyI | GAGTC | 3 cut(s) | 152, 218, 370 |
| MnlI | CCTC | 6 cut(s) | 272, 707, 727, 731, 757, 819 |
| MroI | TCCGGA | 1 cut(s) | 553 |
| MroXI | GAANNNNTTC | 1 cut(s) | 309 |
| MseI | TTAA | 3 cut(s) | 102, 318, 326 |
| MslI | CAYNNNNRTG | 3 cut(s) | 245, 509, 789 |
| MspI | CCGG | 1 cut(s) | 554 |
| MspR9I | CCNGG | 2 cut(s) | 62, 86 |
| MvaI | CCWGG | 2 cut(s) | 62, 86 |
| MvnI | CGCG | 1 cut(s) | 573 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 131, 321, 595, 914 |
| NarI | GGCGCC | 2 cut(s) | 589, 765 |
| NdeII | GATC | 6 cut(s) | 348, 447, 530, 780, 862, 958 |
| NlaIII | CATG | 4 cut(s) | 21, 29, 464, 500 |
| NlaIV | GGNNCC | 3 cut(s) | 590, 707, 766 |
| NmuCI | GTSAC | 2 cut(s) | 221, 901 |
| PaeR7I | CTCGAG | 1 cut(s) | 74 |
| PagI | TCATGA | 2 cut(s) | 25, 460 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 634, 643 |
| PdmI | GAANNNNTTC | 1 cut(s) | 309 |
| PfeI | GAWTC | 4 cut(s) | 57, 70, 426, 557 |
| PfoI | TCCNGGA | 1 cut(s) | 60 |
| PkrI | GCNGC | 1 cut(s) | 136 |
| PleI | GAGTC | 3 cut(s) | 151, 218, 370 |
| PluTI | GGCGCC | 2 cut(s) | 592, 768 |
| PpsI | GAGTC | 3 cut(s) | 151, 218, 370 |
| Ppu21I | YACGTR | 1 cut(s) | 722 |
| Psp124BI | GAGCTC | 2 cut(s) | 468, 889 |
| Psp6I | CCWGG | 2 cut(s) | 60, 84 |
| PspEI | GGTNACC | 1 cut(s) | 680 |
| PspGI | CCWGG | 2 cut(s) | 60, 84 |
| PspN4I | GGNNCC | 3 cut(s) | 590, 707, 766 |
| PspPI | GGNCC | 1 cut(s) | 653 |
| PsuI | RGATCY | 2 cut(s) | 530, 780 |
| RsaI | GTAC | 1 cut(s) | 156 |
| RsaNI | GTAC | 1 cut(s) | 155 |
| RseI | CAYNNNNRTG | 3 cut(s) | 245, 509, 789 |
| SacI | GAGCTC | 2 cut(s) | 468, 889 |
| SaqAI | TTAA | 3 cut(s) | 102, 318, 326 |
| SatI | GCNGC | 1 cut(s) | 135 |
| Sau3AI | GATC | 6 cut(s) | 348, 447, 530, 780, 862, 958 |
| Sau96I | GGNCC | 1 cut(s) | 653 |
| SchI | GAGTC | 3 cut(s) | 152, 218, 370 |
| ScrFI | CCNGG | 2 cut(s) | 62, 86 |
| SduI | GDGCHC | 2 cut(s) | 468, 889 |
| SfaNI | GCATC | 2 cut(s) | 49, 346 |
| SfoI | GGCGCC | 2 cut(s) | 590, 766 |
| Sfr274I | CTCGAG | 1 cut(s) | 74 |
| SinI | GGWCC | 1 cut(s) | 653 |
| SlaI | CTCGAG | 1 cut(s) | 74 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 245, 509, 789 |
| SmlI | CTYRAG | 3 cut(s) | 44, 74, 111 |
| SmoI | CTYRAG | 3 cut(s) | 44, 74, 111 |
| Sse9I | AATT | 4 cut(s) | 332, 523, 562, 670 |
| SsiI | CCGC | 4 cut(s) | 34, 265, 685, 906 |
| SspDI | GGCGCC | 2 cut(s) | 588, 764 |
| SspMI | CTAG | 1 cut(s) | 81 |
| SstI | GAGCTC | 2 cut(s) | 468, 889 |
| StyD4I | CCNGG | 2 cut(s) | 60, 84 |
| TaaI | ACNGT | 1 cut(s) | 100 |
| TaiI | ACGT | 2 cut(s) | 93, 724 |
| TaqI | TCGA | 6 cut(s) | 75, 198, 424, 429, 527, 847 |
| TasI | AATT | 4 cut(s) | 332, 523, 562, 670 |
| TfiI | GAWTC | 4 cut(s) | 57, 70, 426, 557 |
| Tru1I | TTAA | 3 cut(s) | 102, 318, 326 |
| Tru9I | TTAA | 3 cut(s) | 102, 318, 326 |
| TseFI | GTSAC | 2 cut(s) | 221, 901 |
| TseI | GCWGC | 1 cut(s) | 134 |
| Tsp45I | GTSAC | 2 cut(s) | 221, 901 |
| TspDTI | ATGAA | 4 cut(s) | 14, 180, 449, 494 |
| TspGWI | ACGGA | 4 cut(s) | 209, 460, 523, 718 |
| VpaK11BI | GGWCC | 1 cut(s) | 653 |
| XapI | RAATTY | 1 cut(s) | 332 |
| XhoI | CTCGAG | 1 cut(s) | 74 |
| XmnI | GAANNNNTTC | 1 cut(s) | 309 |
| XspI | CTAG | 1 cut(s) | 81 |