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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 80 |
| AcsI | RAATTY | 1 cut(s) | 429 |
| AfaI | GTAC | 1 cut(s) | 249 |
| AgsI | TTSAA | 2 cut(s) | 14, 377 |
| AjiI | CACGTC | 1 cut(s) | 137 |
| AleI | CACNNNNGTG | 1 cut(s) | 367 |
| AluBI | AGCT | 2 cut(s) | 156, 162 |
| AluI | AGCT | 2 cut(s) | 156, 162 |
| Alw26I | GTCTC | 2 cut(s) | 293, 497 |
| ApoI | RAATTY | 1 cut(s) | 429 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 406 |
| BbsI | GAAGAC | 1 cut(s) | 477 |
| BccI | CCATC | 4 cut(s) | 93, 216, 343, 497 |
| BciVI | GTATCC | 1 cut(s) | 104 |
| BcoDI | GTCTC | 2 cut(s) | 293, 497 |
| BfaI | CTAG | 2 cut(s) | 127, 339 |
| BfuI | GTATCC | 1 cut(s) | 104 |
| BmgBI | CACGTC | 1 cut(s) | 137 |
| BmsI | GCATC | 1 cut(s) | 95 |
| BpiI | GAAGAC | 1 cut(s) | 477 |
| BpmI | CTGGAG | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 3 cut(s) | 75, 105, 142 |
| BsaI | GGTCTC | 1 cut(s) | 293 |
| Bse1I | ACTGG | 2 cut(s) | 50, 245 |
| BseGI | GGATG | 1 cut(s) | 239 |
| BseNI | ACTGG | 2 cut(s) | 50, 245 |
| BsmAI | GTCTC | 2 cut(s) | 293, 497 |
| BsmBI | CGTCTC | 1 cut(s) | 497 |
| Bso31I | GGTCTC | 1 cut(s) | 293 |
| Bsp143I | GATC | 1 cut(s) | 445 |
| BspACI | CCGC | 1 cut(s) | 80 |
| BspTNI | GGTCTC | 1 cut(s) | 293 |
| BsrI | ACTGG | 2 cut(s) | 50, 245 |
| BssMI | GATC | 1 cut(s) | 445 |
| Bst4CI | ACNGT | 1 cut(s) | 146 |
| BstC8I | GCNNGC | 2 cut(s) | 84, 154 |
| BstDEI | CTNAG | 2 cut(s) | 185, 511 |
| BstF5I | GGATG | 1 cut(s) | 239 |
| BstKTI | GATC | 1 cut(s) | 448 |
| BstMAI | GTCTC | 2 cut(s) | 293, 497 |
| BstMBI | GATC | 1 cut(s) | 445 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 168, 177, 198 |
| BstV2I | GAAGAC | 1 cut(s) | 477 |
| BsuI | GTATCC | 1 cut(s) | 104 |
| BtrI | CACGTC | 1 cut(s) | 137 |
| BtsCI | GGATG | 1 cut(s) | 239 |
| Cac8I | GCNNGC | 2 cut(s) | 84, 154 |
| Csp6I | GTAC | 1 cut(s) | 248 |
| CviJI | RGCY | 8 cut(s) | 49, 96, 125, 156, 162, 207, 281, 358 |
| CviKI_1 | RGCY | 8 cut(s) | 49, 96, 125, 156, 162, 207, 281, 358 |
| CviQI | GTAC | 1 cut(s) | 248 |
| DdeI | CTNAG | 2 cut(s) | 185, 511 |
| DpnI | GATC | 1 cut(s) | 447 |
| DpnII | GATC | 1 cut(s) | 445 |
| EciI | GGCGGA | 1 cut(s) | 69 |
| Eco31I | GGTCTC | 1 cut(s) | 293 |
| Eco32I | GATATC | 1 cut(s) | 77 |
| EcoRI | GAATTC | 1 cut(s) | 429 |
| EcoRV | GATATC | 1 cut(s) | 77 |
| Esp3I | CGTCTC | 1 cut(s) | 497 |
| FaiI | YATR | 7 cut(s) | 216, 229, 231, 258, 355, 368, 394 |
| FauNDI | CATATG | 1 cut(s) | 229 |
| FokI | GGATG | 1 cut(s) | 246 |
| FspBI | CTAG | 2 cut(s) | 127, 339 |
| GsuI | CTGGAG | 1 cut(s) | 228 |
| HindIII | AAGCTT | 1 cut(s) | 160 |
| HinfI | GANTC | 6 cut(s) | 103, 116, 221, 237, 321, 473 |
| Hpy188I | TCNGA | 2 cut(s) | 53, 401 |
| Hpy188III | TCNNGA | 3 cut(s) | 72, 132, 333 |
| HpyAV | CCTTC | 1 cut(s) | 271 |
| HpyCH4III | ACNGT | 1 cut(s) | 146 |
| HpyCH4IV | ACGT | 2 cut(s) | 136, 313 |
| HpyCH4V | TGCA | 1 cut(s) | 498 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 168, 177, 198 |
| HpyF3I | CTNAG | 2 cut(s) | 185, 511 |
| HpySE526I | ACGT | 2 cut(s) | 136, 313 |
| Kzo9I | GATC | 1 cut(s) | 445 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| LpnPI | CCDG | 8 cut(s) | 31, 47, 96, 117, 258, 287, 339, 346 |
| LweI | GCATC | 1 cut(s) | 95 |
| MaeI | CTAG | 2 cut(s) | 127, 339 |
| MaeII | ACGT | 2 cut(s) | 136, 313 |
| MaeIII | GTNAC | 3 cut(s) | 6, 318, 530 |
| MalI | GATC | 1 cut(s) | 447 |
| MboI | GATC | 1 cut(s) | 445 |
| MboII | GAAGA | 2 cut(s) | 309, 482 |
| MluCI | AATT | 4 cut(s) | 18, 382, 429, 523 |
| MlyI | GAGTC | 3 cut(s) | 215, 315, 467 |
| MnlI | CCTC | 2 cut(s) | 182, 369 |
| MroXI | GAANNNNTTC | 1 cut(s) | 406 |
| MseI | TTAA | 3 cut(s) | 388, 415, 423 |
| MslI | CAYNNNNRTG | 3 cut(s) | 216, 232, 367 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 168, 177, 198 |
| NdeI | CATATG | 1 cut(s) | 229 |
| NdeII | GATC | 1 cut(s) | 445 |
| NmuCI | GTSAC | 1 cut(s) | 318 |
| OliI | CACNNNNGTG | 1 cut(s) | 367 |
| PdmI | GAANNNNTTC | 1 cut(s) | 406 |
| PfeI | GAWTC | 3 cut(s) | 103, 116, 237 |
| PleI | GAGTC | 3 cut(s) | 215, 315, 467 |
| PpsI | GAGTC | 3 cut(s) | 215, 315, 467 |
| RsaI | GTAC | 1 cut(s) | 249 |
| RsaNI | GTAC | 1 cut(s) | 248 |
| RseI | CAYNNNNRTG | 3 cut(s) | 216, 232, 367 |
| SaqAI | TTAA | 3 cut(s) | 388, 415, 423 |
| Sau3AI | GATC | 1 cut(s) | 445 |
| SchI | GAGTC | 3 cut(s) | 215, 315, 467 |
| SetI | ASST | 6 cut(s) | 66, 139, 158, 164, 316, 340 |
| SfaNI | GCATC | 1 cut(s) | 95 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 216, 232, 367 |
| SmlI | CTYRAG | 3 cut(s) | 90, 120, 157 |
| SmoI | CTYRAG | 3 cut(s) | 90, 120, 157 |
| Sse9I | AATT | 4 cut(s) | 18, 382, 429, 523 |
| SsiI | CCGC | 1 cut(s) | 80 |
| SspMI | CTAG | 2 cut(s) | 127, 339 |
| TaaI | ACNGT | 1 cut(s) | 146 |
| TaiI | ACGT | 2 cut(s) | 139, 316 |
| TaqI | TCGA | 2 cut(s) | 295, 521 |
| TasI | AATT | 4 cut(s) | 18, 382, 429, 523 |
| TfiI | GAWTC | 3 cut(s) | 103, 116, 237 |
| Tru1I | TTAA | 3 cut(s) | 388, 415, 423 |
| Tru9I | TTAA | 3 cut(s) | 388, 415, 423 |
| TseFI | GTSAC | 1 cut(s) | 318 |
| Tsp45I | GTSAC | 1 cut(s) | 318 |
| TspDTI | ATGAA | 1 cut(s) | 273 |
| TspGWI | ACGGA | 1 cut(s) | 306 |
| XapI | RAATTY | 1 cut(s) | 429 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 281 |
| XmnI | GAANNNNTTC | 1 cut(s) | 406 |
| XspI | CTAG | 2 cut(s) | 127, 339 |