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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| AccB1I | GGYRCC | 3 cut(s) | 504, 662, 737 |
| AccII | CGCG | 1 cut(s) | 489 |
| AccIII | TCCGGA | 1 cut(s) | 469 |
| AciI | CCGC | 2 cut(s) | 595, 741 |
| AclWI | GGATC | 2 cut(s) | 371, 441 |
| AcoI | YGGCCR | 1 cut(s) | 649 |
| AcsI | RAATTY | 1 cut(s) | 248 |
| AcyI | GRCGYC | 2 cut(s) | 505, 663 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 763, 767 |
| AflIII | ACRYGT | 1 cut(s) | 60 |
| AgsI | TTSAA | 5 cut(s) | 22, 407, 700, 854, 867 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 382, 392 |
| AluI | AGCT | 4 cut(s) | 155, 161, 382, 392 |
| Alw26I | GTCTC | 1 cut(s) | 316 |
| AlwI | GGATC | 2 cut(s) | 371, 441 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 469 |
| AoxI | GGCC | 1 cut(s) | 649 |
| ApeKI | GCWGC | 2 cut(s) | 179, 833 |
| ApoI | RAATTY | 1 cut(s) | 248 |
| AspA2I | CCTAGG | 1 cut(s) | 761 |
| AspLEI | GCGC | 5 cut(s) | 491, 507, 665, 706, 821 |
| AsuHPI | GGTGA | 2 cut(s) | 824, 839 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvrII | CCTAGG | 1 cut(s) | 761 |
| BalI | TGGCCA | 1 cut(s) | 651 |
| BanI | GGYRCC | 3 cut(s) | 504, 662, 737 |
| BbsI | GAAGAC | 1 cut(s) | 296 |
| BbvI | GCAGC | 2 cut(s) | 191, 820 |
| BccI | CCATC | 8 cut(s) | 92, 215, 316, 690, 728, 791, 809, 813 |
| BciVI | GTATCC | 2 cut(s) | 103, 526 |
| BcoDI | GTCTC | 1 cut(s) | 316 |
| BfaI | CTAG | 2 cut(s) | 126, 762 |
| BfoI | RGCGCY | 4 cut(s) | 508, 666, 707, 822 |
| BfuI | GTATCC | 2 cut(s) | 103, 526 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 834 |
| BlnI | CCTAGG | 1 cut(s) | 761 |
| BlsI | GCNGC | 2 cut(s) | 181, 835 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 4 cut(s) | 506, 605, 664, 739 |
| BmsI | GCATC | 4 cut(s) | 94, 262, 778, 820 |
| BpiI | GAAGAC | 1 cut(s) | 296 |
| Bpu10I | CCTNAGC | 1 cut(s) | 873 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaHI | GRCGYC | 2 cut(s) | 505, 663 |
| BsaJI | CCNNGG | 3 cut(s) | 450, 761, 792 |
| BsaWI | WCCGGW | 1 cut(s) | 469 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 763, 767 |
| Bse118I | RCCGGY | 1 cut(s) | 582 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseAI | TCCGGA | 1 cut(s) | 469 |
| BseDI | CCNNGG | 3 cut(s) | 450, 761, 792 |
| BseGI | GGATG | 3 cut(s) | 210, 420, 802 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 763, 767 |
| BseMII | CTCAG | 1 cut(s) | 759 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 2 cut(s) | 191, 820 |
| Bsh1236I | CGCG | 1 cut(s) | 489 |
| BshFI | GGCC | 1 cut(s) | 651 |
| BshNI | GGYRCC | 3 cut(s) | 504, 662, 737 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 2 cut(s) | 470, 583 |
| BslFI | GGGAC | 1 cut(s) | 761 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 763, 767 |
| BsmAI | GTCTC | 1 cut(s) | 316 |
| BsmBI | CGTCTC | 1 cut(s) | 316 |
| BsmFI | GGGAC | 1 cut(s) | 761 |
| BsnI | GGCC | 1 cut(s) | 651 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp13I | TCCGGA | 1 cut(s) | 469 |
| Bsp143I | GATC | 3 cut(s) | 264, 363, 446 |
| Bsp19I | CCATGG | 1 cut(s) | 792 |
| BspACI | CCGC | 2 cut(s) | 595, 741 |
| BspANI | GGCC | 1 cut(s) | 651 |
| BspCNI | CTCAG | 1 cut(s) | 758 |
| BspEI | TCCGGA | 1 cut(s) | 469 |
| BspFNI | CGCG | 1 cut(s) | 489 |
| BspHI | TCATGA | 1 cut(s) | 376 |
| BspLI | GGNNCC | 4 cut(s) | 506, 605, 664, 739 |
| BspPI | GGATC | 2 cut(s) | 371, 441 |
| BspT107I | GGYRCC | 3 cut(s) | 504, 662, 737 |
| BsrFI | RCCGGY | 1 cut(s) | 582 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssAI | RCCGGY | 1 cut(s) | 582 |
| BssECI | CCNNGG | 3 cut(s) | 450, 761, 792 |
| BssMI | GATC | 3 cut(s) | 264, 363, 446 |
| BssNI | GRCGYC | 2 cut(s) | 505, 663 |
| BssT1I | CCWWGG | 2 cut(s) | 761, 792 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 604 |
| BstACI | GRCGYC | 2 cut(s) | 505, 663 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 6 cut(s) | 184, 330, 527, 675, 745, 873 |
| BstDSI | CCRYGG | 2 cut(s) | 450, 792 |
| BstEII | GGTNACC | 1 cut(s) | 578 |
| BstF5I | GGATG | 3 cut(s) | 210, 420, 802 |
| BstFNI | CGCG | 1 cut(s) | 489 |
| BstH2I | RGCGCY | 4 cut(s) | 508, 666, 707, 822 |
| BstHHI | GCGC | 5 cut(s) | 491, 507, 665, 706, 821 |
| BstKTI | GATC | 3 cut(s) | 267, 366, 449 |
| BstMAI | GTCTC | 1 cut(s) | 316 |
| BstMBI | GATC | 3 cut(s) | 264, 363, 446 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 511, 592, 701 |
| BstNSI | RCATGY | 1 cut(s) | 64 |
| BstPI | GGTNACC | 1 cut(s) | 578 |
| BstUI | CGCG | 1 cut(s) | 489 |
| BstV1I | GCAGC | 2 cut(s) | 191, 820 |
| BstV2I | GAAGAC | 1 cut(s) | 296 |
| BstX2I | RGATCY | 1 cut(s) | 446 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 659 |
| BstYI | RGATCY | 1 cut(s) | 446 |
| BsuI | GTATCC | 2 cut(s) | 103, 526 |
| BsuRI | GGCC | 1 cut(s) | 651 |
| BtgI | CCRYGG | 2 cut(s) | 450, 792 |
| BtgZI | GCGATG | 1 cut(s) | 290 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 420, 802 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 376 |
| CfoI | GCGC | 5 cut(s) | 491, 507, 665, 706, 821 |
| Cfr10I | RCCGGY | 1 cut(s) | 582 |
| CseI | GACGC | 1 cut(s) | 701 |
| CviAII | CATG | 7 cut(s) | 61, 377, 413, 653, 785, 793, 809 |
| DdeI | CTNAG | 6 cut(s) | 184, 330, 527, 675, 745, 873 |
| DinI | GGCGCC | 2 cut(s) | 506, 664 |
| DpnI | GATC | 3 cut(s) | 266, 365, 448 |
| DpnII | GATC | 3 cut(s) | 264, 363, 446 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| EaeI | YGGCCR | 1 cut(s) | 649 |
| Eam1104I | CTCTTC | 1 cut(s) | 604 |
| EarI | CTCTTC | 1 cut(s) | 604 |
| EciI | GGCGGA | 1 cut(s) | 610 |
| Eco130I | CCWWGG | 2 cut(s) | 761, 792 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 578 |
| EcoO65I | GGTNACC | 1 cut(s) | 578 |
| EcoRI | GAATTC | 1 cut(s) | 248 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 2 cut(s) | 761, 792 |
| EgeI | GGCGCC | 2 cut(s) | 506, 664 |
| EheI | GGCGCC | 2 cut(s) | 506, 664 |
| ErhI | CCWWGG | 2 cut(s) | 761, 792 |
| Esp3I | CGTCTC | 1 cut(s) | 316 |
| FaeI | CATG | 7 cut(s) | 64, 380, 416, 656, 788, 796, 812 |
| FaqI | GGGAC | 1 cut(s) | 761 |
| FatI | CATG | 7 cut(s) | 60, 376, 412, 652, 784, 792, 808 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 834 |
| FokI | GGATG | 3 cut(s) | 197, 407, 809 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 834 |
| FspBI | CTAG | 2 cut(s) | 126, 762 |
| GlaI | GCGC | 5 cut(s) | 490, 506, 664, 705, 820 |
| GluI | GCNGC | 2 cut(s) | 180, 834 |
| HaeII | RGCGCY | 4 cut(s) | 508, 666, 707, 822 |
| HaeIII | GGCC | 1 cut(s) | 651 |
| HapII | CCGG | 2 cut(s) | 470, 583 |
| HgaI | GACGC | 1 cut(s) | 701 |
| HhaI | GCGC | 5 cut(s) | 491, 507, 665, 706, 821 |
| Hin1I | GRCGYC | 2 cut(s) | 505, 663 |
| Hin1II | CATG | 7 cut(s) | 64, 380, 416, 656, 788, 796, 812 |
| Hin6I | GCGC | 5 cut(s) | 489, 505, 663, 704, 819 |
| HinP1I | GCGC | 5 cut(s) | 489, 505, 663, 704, 819 |
| HincII | GTYRAC | 1 cut(s) | 617 |
| HindII | GTYRAC | 1 cut(s) | 617 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 292, 473, 801 |
| HpaII | CCGG | 2 cut(s) | 470, 583 |
| HphI | GGTGA | 2 cut(s) | 824, 839 |
| Hpy166II | GTNNAC | 2 cut(s) | 617, 751 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 687 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 119, 377, 470 |
| Hpy8I | GTNNAC | 2 cut(s) | 617, 751 |
| HpyAV | CCTTC | 2 cut(s) | 495, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 544, 619 |
| HpyCH4V | TGCA | 3 cut(s) | 317, 356, 836 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 511, 592, 701 |
| HpyF3I | CTNAG | 6 cut(s) | 184, 330, 527, 675, 745, 873 |
| HpySE526I | ACGT | 3 cut(s) | 135, 544, 619 |
| Hsp92I | GRCGYC | 2 cut(s) | 505, 663 |
| Hsp92II | CATG | 7 cut(s) | 64, 380, 416, 656, 788, 796, 812 |
| HspAI | GCGC | 5 cut(s) | 489, 505, 663, 704, 819 |
| KasI | GGCGCC | 2 cut(s) | 504, 662 |
| Kpn2I | TCCGGA | 1 cut(s) | 469 |
| Kzo9I | GATC | 3 cut(s) | 264, 363, 446 |
| LmnI | GCTCC | 1 cut(s) | 389 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 95, 483, 534, 596, 633, 770, 860 |
| Lsp1109I | GCAGC | 2 cut(s) | 191, 820 |
| LweI | GCATC | 4 cut(s) | 94, 262, 778, 820 |
| MaeI | CTAG | 2 cut(s) | 126, 762 |
| MaeII | ACGT | 3 cut(s) | 135, 544, 619 |
| MaeIII | GTNAC | 3 cut(s) | 5, 349, 578 |
| MalI | GATC | 3 cut(s) | 266, 365, 448 |
| MboI | GATC | 3 cut(s) | 264, 363, 446 |
| MboII | GAAGA | 3 cut(s) | 301, 442, 621 |
| MflI | RGATCY | 1 cut(s) | 446 |
| MlsI | TGGCCA | 1 cut(s) | 651 |
| MluCI | AATT | 5 cut(s) | 17, 248, 342, 439, 478 |
| MluNI | TGGCCA | 1 cut(s) | 651 |
| Mly113I | GGCGCC | 2 cut(s) | 505, 663 |
| MlyI | GAGTC | 3 cut(s) | 214, 286, 810 |
| MnlI | CCTC | 8 cut(s) | 181, 317, 605, 625, 629, 655, 717, 754 |
| Mox20I | TGGCCA | 1 cut(s) | 651 |
| MroI | TCCGGA | 1 cut(s) | 469 |
| MscI | TGGCCA | 1 cut(s) | 651 |
| MseI | TTAA | 2 cut(s) | 234, 880 |
| MslI | CAYNNNNRTG | 6 cut(s) | 215, 425, 657, 687, 810, 813 |
| Msp20I | TGGCCA | 1 cut(s) | 651 |
| MspI | CCGG | 2 cut(s) | 470, 583 |
| MvnI | CGCG | 1 cut(s) | 489 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 167, 176, 188, 197, 511, 592, 701 |
| NarI | GGCGCC | 2 cut(s) | 505, 663 |
| NcoI | CCATGG | 1 cut(s) | 792 |
| NdeII | GATC | 3 cut(s) | 264, 363, 446 |
| NlaIII | CATG | 7 cut(s) | 64, 380, 416, 656, 788, 796, 812 |
| NlaIV | GGNNCC | 4 cut(s) | 506, 605, 664, 739 |
| NspI | RCATGY | 1 cut(s) | 64 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 376 |
| PciI | ACATGT | 1 cut(s) | 60 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 473 |
| PkrI | GCNGC | 2 cut(s) | 181, 835 |
| PleI | GAGTC | 3 cut(s) | 214, 286, 809 |
| PluTI | GGCGCC | 2 cut(s) | 508, 666 |
| PpsI | GAGTC | 3 cut(s) | 214, 286, 809 |
| PscI | ACATGT | 1 cut(s) | 60 |
| PspEI | GGTNACC | 1 cut(s) | 578 |
| PspN4I | GGNNCC | 4 cut(s) | 506, 605, 664, 739 |
| PsuI | RGATCY | 1 cut(s) | 446 |
| RseI | CAYNNNNRTG | 6 cut(s) | 215, 425, 657, 687, 810, 813 |
| SaqAI | TTAA | 2 cut(s) | 234, 880 |
| SatI | GCNGC | 2 cut(s) | 180, 834 |
| Sau3AI | GATC | 3 cut(s) | 264, 363, 446 |
| SchI | GAGTC | 3 cut(s) | 214, 286, 810 |
| SfaNI | GCATC | 4 cut(s) | 94, 262, 778, 820 |
| SfoI | GGCGCC | 2 cut(s) | 506, 664 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 215, 425, 657, 687, 810, 813 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 5 cut(s) | 17, 248, 342, 439, 478 |
| SsiI | CCGC | 2 cut(s) | 595, 741 |
| SspDI | GGCGCC | 2 cut(s) | 504, 662 |
| SspMI | CTAG | 2 cut(s) | 126, 762 |
| StyI | CCWWGG | 2 cut(s) | 761, 792 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 547, 622 |
| TaqI | TCGA | 2 cut(s) | 120, 340 |
| TasI | AATT | 5 cut(s) | 17, 248, 342, 439, 478 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 473 |
| Tru1I | TTAA | 2 cut(s) | 234, 880 |
| Tru9I | TTAA | 2 cut(s) | 234, 880 |
| TseI | GCWGC | 2 cut(s) | 179, 833 |
| TspDTI | ATGAA | 2 cut(s) | 365, 410 |
| TspGWI | ACGGA | 3 cut(s) | 376, 439, 616 |
| XapI | RAATTY | 1 cut(s) | 248 |
| XceI | RCATGY | 1 cut(s) | 64 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 764, 812 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 761 |
| XspI | CTAG | 2 cut(s) | 126, 762 |