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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 585, 630 |
| Acc65I | GGTACC | 1 cut(s) | 660 |
| AccB1I | GGYRCC | 4 cut(s) | 121, 660, 805, 826 |
| AccBSI | CCGCTC | 1 cut(s) | 658 |
| AciI | CCGC | 3 cut(s) | 658, 705, 726 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcuI | CTGAAG | 2 cut(s) | 513, 999 |
| AcvI | CACGTG | 2 cut(s) | 748, 766 |
| AcyI | GRCGYC | 1 cut(s) | 806 |
| AdeI | CACNNNGTG | 1 cut(s) | 751 |
| AfaI | GTAC | 4 cut(s) | 490, 662, 917, 992 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 671, 714, 767, 840 |
| AflIII | ACRYGT | 2 cut(s) | 745, 763 |
| AgsI | TTSAA | 7 cut(s) | 96, 307, 314, 343, 356, 591, 973 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 410 |
| AjnI | CCWGG | 2 cut(s) | 117, 713 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 6 cut(s) | 247, 371, 427, 529, 551, 872 |
| AluI | AGCT | 6 cut(s) | 247, 371, 427, 529, 551, 872 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 1 cut(s) | 693 |
| ApaI | GGGCCC | 1 cut(s) | 697 |
| ApeKI | GCWGC | 1 cut(s) | 872 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| Asp718I | GGTACC | 1 cut(s) | 660 |
| AspLEI | GCGC | 4 cut(s) | 259, 270, 651, 808 |
| AspS9I | GGNCC | 3 cut(s) | 693, 694, 895 |
| AsuHPI | GGTGA | 1 cut(s) | 949 |
| AvaII | GGWCC | 1 cut(s) | 895 |
| BaeGI | GKGCMC | 1 cut(s) | 697 |
| BanI | GGYRCC | 4 cut(s) | 121, 660, 805, 826 |
| BanII | GRGCYC | 1 cut(s) | 697 |
| BauI | CACGAG | 2 cut(s) | 514, 572 |
| BbrPI | CACGTG | 2 cut(s) | 748, 766 |
| BbvI | GCAGC | 1 cut(s) | 859 |
| BccI | CCATC | 2 cut(s) | 93, 932 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 111, 145 |
| BciT130I | CCWGG | 2 cut(s) | 119, 715 |
| BciVI | GTATCC | 2 cut(s) | 735, 796 |
| BfaI | CTAG | 5 cut(s) | 15, 260, 791, 839, 869 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| BfoI | RGCGCY | 3 cut(s) | 260, 271, 809 |
| BfuI | GTATCC | 2 cut(s) | 735, 796 |
| BisI | GCNGC | 1 cut(s) | 873 |
| BlsI | GCNGC | 1 cut(s) | 874 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 715 |
| Bme18I | GGWCC | 1 cut(s) | 895 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 3 cut(s) | 693, 694, 895 |
| BmiI | GGNNCC | 6 cut(s) | 123, 662, 695, 807, 828, 896 |
| BmrFI | CCNGG | 2 cut(s) | 119, 715 |
| BmsI | GCATC | 4 cut(s) | 174, 179, 226, 988 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BsaAI | YACGTR | 2 cut(s) | 748, 766 |
| BsaBI | GATNNNNATC | 1 cut(s) | 951 |
| BsaHI | GRCGYC | 1 cut(s) | 806 |
| BsaJI | CCNNGG | 1 cut(s) | 809 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 762, 792 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 671, 714, 767, 840 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| Bse8I | GATNNNNATC | 1 cut(s) | 951 |
| BseBI | CCWGG | 2 cut(s) | 119, 715 |
| BseDI | CCNNGG | 1 cut(s) | 809 |
| BseGI | GGATG | 2 cut(s) | 241, 1003 |
| BseJI | GATNNNNATC | 1 cut(s) | 951 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 671, 714, 767, 840 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 3 cut(s) | 223, 543, 890 |
| BseRI | GAGGAG | 2 cut(s) | 284, 788 |
| BseSI | GKGCMC | 1 cut(s) | 697 |
| BseXI | GCAGC | 1 cut(s) | 859 |
| BshFI | GGCC | 1 cut(s) | 695 |
| BshNI | GGYRCC | 4 cut(s) | 121, 660, 805, 826 |
| BslFI | GGGAC | 2 cut(s) | 698, 908 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 671, 714, 767, 840 |
| BsmFI | GGGAC | 2 cut(s) | 698, 908 |
| BsnI | GGCC | 1 cut(s) | 695 |
| Bsp120I | GGGCCC | 1 cut(s) | 693 |
| Bsp1286I | GDGCHC | 1 cut(s) | 697 |
| Bsp1407I | TGTACA | 1 cut(s) | 990 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 510 |
| Bsp19I | CCATGG | 1 cut(s) | 809 |
| BspACI | CCGC | 3 cut(s) | 658, 705, 726 |
| BspANI | GGCC | 1 cut(s) | 695 |
| BspCNI | CTCAG | 3 cut(s) | 222, 544, 891 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 6 cut(s) | 123, 662, 695, 807, 828, 896 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 4 cut(s) | 121, 660, 805, 826 |
| BsrBI | CCGCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BsrGI | TGTACA | 1 cut(s) | 990 |
| BssECI | CCNNGG | 1 cut(s) | 809 |
| BssMI | GATC | 3 cut(s) | 133, 228, 510 |
| BssNI | GRCGYC | 1 cut(s) | 806 |
| BssSI | CACGAG | 2 cut(s) | 514, 572 |
| BssT1I | CCWWGG | 1 cut(s) | 809 |
| Bst2BI | CACGAG | 2 cut(s) | 514, 572 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 715 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 384, 488 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 1 cut(s) | 806 |
| BstAUI | TGTACA | 1 cut(s) | 990 |
| BstBAI | YACGTR | 2 cut(s) | 748, 766 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 859 |
| BstDEI | CTNAG | 5 cut(s) | 209, 552, 606, 666, 899 |
| BstDSI | CCRYGG | 1 cut(s) | 809 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 241, 1003 |
| BstH2I | RGCGCY | 3 cut(s) | 260, 271, 809 |
| BstHHI | GCGC | 4 cut(s) | 259, 270, 651, 808 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 513 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 510 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 265, 655, 854 |
| BstNI | CCWGG | 2 cut(s) | 119, 715 |
| BstNSI | RCATGY | 2 cut(s) | 48, 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 713 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstSLI | GKGCMC | 1 cut(s) | 697 |
| BstV1I | GCAGC | 1 cut(s) | 859 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuI | GTATCC | 2 cut(s) | 735, 796 |
| BsuRI | GGCC | 1 cut(s) | 695 |
| BtgI | CCRYGG | 1 cut(s) | 809 |
| BtgZI | GCGATG | 1 cut(s) | 202 |
| BtsCI | GGATG | 2 cut(s) | 241, 1003 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 859 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 4 cut(s) | 259, 270, 651, 808 |
| Cfr13I | GGNCC | 3 cut(s) | 693, 694, 895 |
| Csp6I | GTAC | 4 cut(s) | 489, 661, 916, 991 |
| CviAII | CATG | 8 cut(s) | 45, 164, 388, 560, 617, 679, 810, 994 |
| CviQI | GTAC | 4 cut(s) | 489, 661, 916, 991 |
| DdeI | CTNAG | 5 cut(s) | 209, 552, 606, 666, 899 |
| DinI | GGCGCC | 1 cut(s) | 807 |
| DpnI | GATC | 3 cut(s) | 135, 230, 512 |
| DpnII | GATC | 3 cut(s) | 133, 228, 510 |
| DraIII | CACNNNGTG | 1 cut(s) | 751 |
| DriI | GACNNNNNGTC | 1 cut(s) | 410 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 1 cut(s) | 809 |
| Eco24I | GRGCYC | 1 cut(s) | 697 |
| Eco47I | GGWCC | 1 cut(s) | 895 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 2 cut(s) | 513, 999 |
| Eco72I | CACGTG | 2 cut(s) | 748, 766 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 895 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 713 |
| EcoT14I | CCWWGG | 1 cut(s) | 809 |
| EcoT38I | GRGCYC | 1 cut(s) | 697 |
| EgeI | GGCGCC | 1 cut(s) | 807 |
| EheI | GGCGCC | 1 cut(s) | 807 |
| ErhI | CCWWGG | 1 cut(s) | 809 |
| FaeI | CATG | 8 cut(s) | 48, 167, 391, 563, 620, 682, 813, 997 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 903, 935 |
| FaqI | GGGAC | 2 cut(s) | 698, 908 |
| FatI | CATG | 8 cut(s) | 44, 163, 387, 559, 616, 678, 809, 993 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 873 |
| FokI | GGATG | 2 cut(s) | 248, 1010 |
| FriOI | GRGCYC | 1 cut(s) | 697 |
| Fsp4HI | GCNGC | 1 cut(s) | 873 |
| FspBI | CTAG | 5 cut(s) | 15, 260, 791, 839, 869 |
| GlaI | GCGC | 4 cut(s) | 258, 269, 650, 807 |
| GluI | GCNGC | 1 cut(s) | 873 |
| HaeII | RGCGCY | 3 cut(s) | 260, 271, 809 |
| HaeIII | GGCC | 1 cut(s) | 695 |
| HhaI | GCGC | 4 cut(s) | 259, 270, 651, 808 |
| Hin1I | GRCGYC | 1 cut(s) | 806 |
| Hin1II | CATG | 8 cut(s) | 48, 167, 391, 563, 620, 682, 813, 997 |
| Hin6I | GCGC | 4 cut(s) | 257, 268, 649, 806 |
| HinP1I | GCGC | 4 cut(s) | 257, 268, 649, 806 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| HphI | GGTGA | 1 cut(s) | 949 |
| Hpy166II | GTNNAC | 3 cut(s) | 404, 916, 991 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 133, 212, 367 |
| Hpy188III | TCNNGA | 5 cut(s) | 181, 514, 574, 591, 617 |
| Hpy8I | GTNNAC | 3 cut(s) | 404, 916, 991 |
| HpyAV | CCTTC | 3 cut(s) | 301, 460, 712 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 384, 488 |
| HpyCH4IV | ACGT | 3 cut(s) | 687, 747, 765 |
| HpyCH4V | TGCA | 5 cut(s) | 239, 635, 875, 923, 1001 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 265, 655, 854 |
| HpyF3I | CTNAG | 5 cut(s) | 209, 552, 606, 666, 899 |
| HpySE526I | ACGT | 3 cut(s) | 687, 747, 765 |
| Hsp92I | GRCGYC | 1 cut(s) | 806 |
| Hsp92II | CATG | 8 cut(s) | 48, 167, 391, 563, 620, 682, 813, 997 |
| HspAI | GCGC | 4 cut(s) | 257, 268, 649, 806 |
| KasI | GGCGCC | 1 cut(s) | 805 |
| KpnI | GGTACC | 1 cut(s) | 664 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 510 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| Lsp1109I | GCAGC | 1 cut(s) | 859 |
| LweI | GCATC | 4 cut(s) | 174, 179, 226, 988 |
| MaeI | CTAG | 5 cut(s) | 15, 260, 791, 839, 869 |
| MaeII | ACGT | 3 cut(s) | 687, 747, 765 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 3 cut(s) | 135, 230, 512 |
| MbiI | CCGCTC | 1 cut(s) | 658 |
| MboI | GATC | 3 cut(s) | 133, 228, 510 |
| MboII | GAAGA | 7 cut(s) | 275, 365, 938, 941, 944, 947, 992 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 697 |
| MluCI | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| Mly113I | GGCGCC | 1 cut(s) | 806 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MslI | CAYNNNNRTG | 1 cut(s) | 572 |
| MspR9I | CCNGG | 2 cut(s) | 119, 715 |
| MvaI | CCWGG | 2 cut(s) | 119, 715 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 265, 655, 854 |
| NarI | GGCGCC | 1 cut(s) | 806 |
| NcoI | CCATGG | 1 cut(s) | 809 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 510 |
| NlaIII | CATG | 8 cut(s) | 48, 167, 391, 563, 620, 682, 813, 997 |
| NlaIV | GGNNCC | 6 cut(s) | 123, 662, 695, 807, 828, 896 |
| NspI | RCATGY | 2 cut(s) | 48, 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 874 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PluTI | GGCGCC | 1 cut(s) | 809 |
| PmaCI | CACGTG | 2 cut(s) | 748, 766 |
| PmlI | CACGTG | 2 cut(s) | 748, 766 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 748, 766 |
| PpuMI | RGGWCCY | 1 cut(s) | 895 |
| PsiI | TTATAA | 2 cut(s) | 585, 630 |
| Psp5II | RGGWCCY | 1 cut(s) | 895 |
| Psp6I | CCWGG | 2 cut(s) | 117, 713 |
| PspCI | CACGTG | 2 cut(s) | 748, 766 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 2 cut(s) | 117, 713 |
| PspN4I | GGNNCC | 6 cut(s) | 123, 662, 695, 807, 828, 896 |
| PspOMI | GGGCCC | 1 cut(s) | 693 |
| PspPI | GGNCC | 3 cut(s) | 693, 694, 895 |
| PspPPI | RGGWCCY | 1 cut(s) | 895 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 4 cut(s) | 490, 662, 917, 992 |
| RsaNI | GTAC | 4 cut(s) | 489, 661, 916, 991 |
| RseI | CAYNNNNRTG | 1 cut(s) | 572 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SatI | GCNGC | 1 cut(s) | 873 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 510 |
| Sau96I | GGNCC | 3 cut(s) | 693, 694, 895 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 715 |
| SduI | GDGCHC | 1 cut(s) | 697 |
| SfaNI | GCATC | 4 cut(s) | 174, 179, 226, 988 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SfoI | GGCGCC | 1 cut(s) | 807 |
| SinI | GGWCC | 1 cut(s) | 895 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 572 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| SsiI | CCGC | 3 cut(s) | 658, 705, 726 |
| SspDI | GGCGCC | 1 cut(s) | 805 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 5 cut(s) | 15, 260, 791, 839, 869 |
| StyD4I | CCNGG | 2 cut(s) | 117, 713 |
| StyI | CCWWGG | 1 cut(s) | 809 |
| TaaI | ACNGT | 3 cut(s) | 62, 384, 488 |
| TaiI | ACGT | 3 cut(s) | 690, 750, 768 |
| TaqI | TCGA | 1 cut(s) | 227 |
| TasI | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| TatI | WGTACW | 1 cut(s) | 990 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| TseI | GCWGC | 1 cut(s) | 872 |
| TspDTI | ATGAA | 3 cut(s) | 24, 512, 605 |
| VpaK11BI | GGWCC | 1 cut(s) | 895 |
| XceI | RCATGY | 2 cut(s) | 48, 167 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 5 cut(s) | 15, 260, 791, 839, 869 |