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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 117 |
| AciI | CCGC | 3 cut(s) | 36, 92, 199 |
| AfaI | GTAC | 1 cut(s) | 368 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 117, 232 |
| AgsI | TTSAA | 1 cut(s) | 496 |
| AhlI | ACTAGT | 1 cut(s) | 341 |
| AjiI | CACGTC | 2 cut(s) | 8, 53 |
| AjnI | CCWGG | 2 cut(s) | 225, 249 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 408, 440 |
| AluBI | AGCT | 4 cut(s) | 58, 67, 275, 281 |
| AluI | AGCT | 4 cut(s) | 58, 67, 275, 281 |
| Alw26I | GTCTC | 2 cut(s) | 412, 616 |
| Ama87I | CYCGRG | 1 cut(s) | 239 |
| AoxI | GGCC | 1 cut(s) | 108 |
| ApeKI | GCWGC | 1 cut(s) | 299 |
| AspLEI | GCGC | 1 cut(s) | 23 |
| AspS9I | GGNCC | 1 cut(s) | 40 |
| AvaI | CYCGRG | 1 cut(s) | 239 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BbsI | GAAGAC | 2 cut(s) | 393, 596 |
| BbvI | GCAGC | 1 cut(s) | 311 |
| BccI | CCATC | 4 cut(s) | 177, 212, 462, 616 |
| BciT130I | CCWGG | 2 cut(s) | 227, 251 |
| BcoDI | GTCTC | 2 cut(s) | 412, 616 |
| BcuI | ACTAGT | 1 cut(s) | 341 |
| BfaI | CTAG | 3 cut(s) | 246, 342, 458 |
| BfoI | RGCGCY | 1 cut(s) | 24 |
| BisI | GCNGC | 1 cut(s) | 300 |
| BlsI | GCNGC | 1 cut(s) | 301 |
| Bme1390I | CCNGG | 2 cut(s) | 227, 251 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmeT110I | CYCGRG | 1 cut(s) | 239 |
| BmgBI | CACGTC | 2 cut(s) | 8, 53 |
| BmgT120I | GGNCC | 1 cut(s) | 40 |
| BmiI | GGNNCC | 2 cut(s) | 41, 42 |
| BmrFI | CCNGG | 2 cut(s) | 227, 251 |
| BmsI | GCATC | 2 cut(s) | 214, 562 |
| BpiI | GAAGAC | 2 cut(s) | 393, 596 |
| BpmI | CTGGAG | 1 cut(s) | 347 |
| BpuEI | CTTGAG | 2 cut(s) | 194, 261 |
| BsaI | GGTCTC | 1 cut(s) | 412 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 117, 232 |
| Bse1I | ACTGG | 3 cut(s) | 99, 169, 364 |
| BseBI | CCWGG | 2 cut(s) | 227, 251 |
| BseGI | GGATG | 2 cut(s) | 126, 358 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 117, 232 |
| BseMII | CTCAG | 3 cut(s) | 406, 621, 627 |
| BseNI | ACTGG | 3 cut(s) | 99, 169, 364 |
| BseXI | GCAGC | 1 cut(s) | 311 |
| Bsh1285I | CGRYCG | 1 cut(s) | 92 |
| BshFI | GGCC | 1 cut(s) | 110 |
| BsiEI | CGRYCG | 1 cut(s) | 92 |
| BsiHKCI | CYCGRG | 1 cut(s) | 239 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 117, 232 |
| BsmAI | GTCTC | 2 cut(s) | 412, 616 |
| BsmBI | CGTCTC | 1 cut(s) | 616 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsmI | GAATGC | 1 cut(s) | 548 |
| BsnI | GGCC | 1 cut(s) | 110 |
| Bso31I | GGTCTC | 1 cut(s) | 412 |
| BsoBI | CYCGRG | 1 cut(s) | 239 |
| Bsp143I | GATC | 1 cut(s) | 82 |
| BspACI | CCGC | 3 cut(s) | 36, 92, 199 |
| BspANI | GGCC | 1 cut(s) | 110 |
| BspCNI | CTCAG | 3 cut(s) | 405, 622, 626 |
| BspLI | GGNNCC | 2 cut(s) | 41, 42 |
| BspTNI | GGTCTC | 1 cut(s) | 412 |
| BsrI | ACTGG | 3 cut(s) | 99, 169, 364 |
| BssMI | GATC | 1 cut(s) | 82 |
| Bst2UI | CCWGG | 2 cut(s) | 227, 251 |
| Bst4CI | ACNGT | 1 cut(s) | 265 |
| BstC8I | GCNNGC | 4 cut(s) | 34, 96, 203, 273 |
| BstDEI | CTNAG | 4 cut(s) | 304, 392, 613, 630 |
| BstF5I | GGATG | 2 cut(s) | 126, 358 |
| BstH2I | RGCGCY | 1 cut(s) | 24 |
| BstHHI | GCGC | 1 cut(s) | 23 |
| BstKTI | GATC | 1 cut(s) | 85 |
| BstMAI | GTCTC | 2 cut(s) | 412, 616 |
| BstMBI | GATC | 1 cut(s) | 82 |
| BstMCI | CGRYCG | 1 cut(s) | 92 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 10, 29, 55, 64, 287, 296 |
| BstNI | CCWGG | 2 cut(s) | 227, 251 |
| BstNSI | RCATGY | 2 cut(s) | 36, 259 |
| BstSCI | CCNGG | 2 cut(s) | 225, 249 |
| BstV1I | GCAGC | 1 cut(s) | 311 |
| BstV2I | GAAGAC | 2 cut(s) | 393, 596 |
| BsuRI | GGCC | 1 cut(s) | 110 |
| BtgZI | GCGATG | 1 cut(s) | 590 |
| BtrI | CACGTC | 2 cut(s) | 8, 53 |
| BtsCI | GGATG | 2 cut(s) | 126, 358 |
| BtsI | GCAGTG | 1 cut(s) | 44 |
| BtsIMutI | CAGTG | 1 cut(s) | 44 |
| Cac8I | GCNNGC | 4 cut(s) | 34, 96, 203, 273 |
| CfoI | GCGC | 1 cut(s) | 23 |
| Cfr13I | GGNCC | 1 cut(s) | 40 |
| Csp6I | GTAC | 1 cut(s) | 367 |
| CviAII | CATG | 5 cut(s) | 25, 33, 70, 256, 437 |
| CviQI | GTAC | 1 cut(s) | 367 |
| DdeI | CTNAG | 4 cut(s) | 304, 392, 613, 630 |
| DpnI | GATC | 1 cut(s) | 84 |
| DpnII | GATC | 1 cut(s) | 82 |
| EciI | GGCGGA | 1 cut(s) | 188 |
| Eco31I | GGTCTC | 1 cut(s) | 412 |
| Eco32I | GATATC | 1 cut(s) | 176 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| Eco88I | CYCGRG | 1 cut(s) | 239 |
| EcoO109I | RGGNCCY | 1 cut(s) | 40 |
| EcoRII | CCWGG | 2 cut(s) | 225, 249 |
| EcoRV | GATATC | 1 cut(s) | 176 |
| Esp3I | CGTCTC | 1 cut(s) | 616 |
| FaeI | CATG | 5 cut(s) | 28, 36, 73, 259, 440 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 5 cut(s) | 24, 32, 69, 255, 436 |
| FauI | CCCGC | 1 cut(s) | 29 |
| FauNDI | CATATG | 1 cut(s) | 348 |
| Fnu4HI | GCNGC | 1 cut(s) | 300 |
| FokI | GGATG | 2 cut(s) | 133, 365 |
| Fsp4HI | GCNGC | 1 cut(s) | 300 |
| FspBI | CTAG | 3 cut(s) | 246, 342, 458 |
| GlaI | GCGC | 1 cut(s) | 22 |
| GluI | GCNGC | 1 cut(s) | 300 |
| GsuI | CTGGAG | 1 cut(s) | 347 |
| HaeII | RGCGCY | 1 cut(s) | 24 |
| HaeIII | GGCC | 1 cut(s) | 110 |
| HhaI | GCGC | 1 cut(s) | 23 |
| Hin1II | CATG | 5 cut(s) | 28, 36, 73, 259, 440 |
| Hin6I | GCGC | 1 cut(s) | 21 |
| HinP1I | GCGC | 1 cut(s) | 21 |
| HincII | GTYRAC | 1 cut(s) | 76 |
| HindII | GTYRAC | 1 cut(s) | 76 |
| HindIII | AAGCTT | 1 cut(s) | 279 |
| HinfI | GANTC | 5 cut(s) | 222, 356, 440, 592, 642 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 2 cut(s) | 395, 520 |
| Hpy188III | TCNNGA | 6 cut(s) | 118, 171, 191, 239, 452, 506 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| HpyAV | CCTTC | 1 cut(s) | 390 |
| HpyCH4III | ACNGT | 1 cut(s) | 265 |
| HpyCH4IV | ACGT | 3 cut(s) | 7, 52, 432 |
| HpyCH4V | TGCA | 2 cut(s) | 531, 656 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 10, 29, 55, 64, 287, 296 |
| HpyF3I | CTNAG | 4 cut(s) | 304, 392, 613, 630 |
| HpySE526I | ACGT | 3 cut(s) | 7, 52, 432 |
| Hsp92II | CATG | 5 cut(s) | 28, 36, 73, 259, 440 |
| HspAI | GCGC | 1 cut(s) | 21 |
| KflI | GGGWCCC | 1 cut(s) | 40 |
| Kzo9I | GATC | 1 cut(s) | 82 |
| LmnI | GCTCC | 1 cut(s) | 366 |
| Lsp1109I | GCAGC | 1 cut(s) | 311 |
| LweI | GCATC | 2 cut(s) | 214, 562 |
| MaeI | CTAG | 3 cut(s) | 246, 342, 458 |
| MaeII | ACGT | 3 cut(s) | 7, 52, 432 |
| MaeIII | GTNAC | 1 cut(s) | 125 |
| MalI | GATC | 1 cut(s) | 84 |
| MboI | GATC | 1 cut(s) | 82 |
| MboII | GAAGA | 4 cut(s) | 395, 398, 428, 601 |
| MluCI | AATT | 1 cut(s) | 137 |
| MlyI | GAGTC | 2 cut(s) | 434, 586 |
| MnlI | CCTC | 4 cut(s) | 24, 301, 401, 488 |
| MseI | TTAA | 2 cut(s) | 534, 542 |
| MslI | CAYNNNNRTG | 1 cut(s) | 351 |
| MspR9I | CCNGG | 2 cut(s) | 227, 251 |
| Mva1269I | GAATGC | 1 cut(s) | 548 |
| MvaI | CCWGG | 2 cut(s) | 227, 251 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 10, 29, 55, 64, 287, 296 |
| NdeI | CATATG | 1 cut(s) | 348 |
| NdeII | GATC | 1 cut(s) | 82 |
| NlaIII | CATG | 5 cut(s) | 28, 36, 73, 259, 440 |
| NlaIV | GGNNCC | 2 cut(s) | 41, 42 |
| NspI | RCATGY | 2 cut(s) | 36, 259 |
| PaeI | GCATGC | 1 cut(s) | 36 |
| PaeR7I | CTCGAG | 1 cut(s) | 239 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 13 |
| PctI | GAATGC | 1 cut(s) | 548 |
| PfeI | GAWTC | 3 cut(s) | 222, 356, 642 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 117 |
| PfoI | TCCNGGA | 1 cut(s) | 225 |
| PkrI | GCNGC | 1 cut(s) | 301 |
| PleI | GAGTC | 2 cut(s) | 434, 586 |
| PpsI | GAGTC | 2 cut(s) | 434, 586 |
| PpuMI | RGGWCCY | 1 cut(s) | 40 |
| Psp5II | RGGWCCY | 1 cut(s) | 40 |
| Psp6I | CCWGG | 2 cut(s) | 225, 249 |
| PspGI | CCWGG | 2 cut(s) | 225, 249 |
| PspN4I | GGNNCC | 2 cut(s) | 41, 42 |
| PspPI | GGNCC | 1 cut(s) | 40 |
| PspPPI | RGGWCCY | 1 cut(s) | 40 |
| RsaI | GTAC | 1 cut(s) | 368 |
| RsaNI | GTAC | 1 cut(s) | 367 |
| RseI | CAYNNNNRTG | 1 cut(s) | 351 |
| SaqAI | TTAA | 2 cut(s) | 534, 542 |
| SatI | GCNGC | 1 cut(s) | 300 |
| Sau3AI | GATC | 1 cut(s) | 82 |
| Sau96I | GGNCC | 1 cut(s) | 40 |
| SchI | GAGTC | 2 cut(s) | 434, 586 |
| ScrFI | CCNGG | 2 cut(s) | 227, 251 |
| SfaNI | GCATC | 2 cut(s) | 214, 562 |
| Sfr274I | CTCGAG | 1 cut(s) | 239 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SlaI | CTCGAG | 1 cut(s) | 239 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 351 |
| SmlI | CTYRAG | 3 cut(s) | 209, 239, 276 |
| SmoI | CTYRAG | 3 cut(s) | 209, 239, 276 |
| SpeI | ACTAGT | 1 cut(s) | 341 |
| SphI | GCATGC | 1 cut(s) | 36 |
| Sse9I | AATT | 1 cut(s) | 137 |
| SsiI | CCGC | 3 cut(s) | 36, 92, 199 |
| SspMI | CTAG | 3 cut(s) | 246, 342, 458 |
| StyD4I | CCNGG | 2 cut(s) | 225, 249 |
| TaaI | ACNGT | 1 cut(s) | 265 |
| TaiI | ACGT | 3 cut(s) | 10, 55, 435 |
| TaqI | TCGA | 3 cut(s) | 240, 414, 640 |
| TaqII | GACCGA | 1 cut(s) | 50 |
| TasI | AATT | 1 cut(s) | 137 |
| TatI | WGTACW | 1 cut(s) | 366 |
| TfiI | GAWTC | 3 cut(s) | 222, 356, 642 |
| Tru1I | TTAA | 2 cut(s) | 534, 542 |
| Tru9I | TTAA | 2 cut(s) | 534, 542 |
| TscAI | CASTG | 1 cut(s) | 51 |
| TseI | GCWGC | 1 cut(s) | 299 |
| TspDTI | ATGAA | 2 cut(s) | 392, 396 |
| TspRI | CASTG | 1 cut(s) | 51 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XceI | RCATGY | 2 cut(s) | 36, 259 |
| XhoI | CTCGAG | 1 cut(s) | 239 |
| XspI | CTAG | 3 cut(s) | 246, 342, 458 |