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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 537, 582 |
| Acc65I | GGTACC | 1 cut(s) | 612 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 612 |
| AccBSI | CCGCTC | 1 cut(s) | 610 |
| AciI | CCGC | 4 cut(s) | 610, 658, 679, 692 |
| AclWI | GGATC | 2 cut(s) | 141, 479 |
| AcsI | RAATTY | 1 cut(s) | 377 |
| AcuI | CTGAAG | 1 cut(s) | 780 |
| AcvI | CACGTG | 1 cut(s) | 701 |
| AcyI | GRCGYC | 1 cut(s) | 229 |
| AdeI | CACNNNGTG | 1 cut(s) | 704 |
| AfaI | GTAC | 3 cut(s) | 451, 522, 614 |
| AfeI | AGCGCT | 2 cut(s) | 297, 308 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 596, 597, 623, 667 |
| AflIII | ACRYGT | 1 cut(s) | 698 |
| AgsI | TTSAA | 6 cut(s) | 96, 346, 353, 382, 543, 754 |
| AjnI | CCWGG | 1 cut(s) | 666 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 294, 326, 447, 479 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 286, 490, 503, 758 |
| AluI | AGCT | 4 cut(s) | 286, 490, 503, 758 |
| Alw26I | GTCTC | 1 cut(s) | 720 |
| AlwI | GGATC | 2 cut(s) | 141, 479 |
| Aor51HI | AGCGCT | 2 cut(s) | 297, 308 |
| AoxI | GGCC | 2 cut(s) | 545, 646 |
| ApaI | GGGCCC | 1 cut(s) | 650 |
| ApeKI | GCWGC | 1 cut(s) | 782 |
| ApoI | RAATTY | 1 cut(s) | 377 |
| Asp718I | GGTACC | 1 cut(s) | 612 |
| AspA2I | CCTAGG | 1 cut(s) | 14 |
| AspLEI | GCGC | 4 cut(s) | 298, 309, 369, 603 |
| AspS9I | GGNCC | 2 cut(s) | 646, 647 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 716, 730 |
| AvrII | CCTAGG | 1 cut(s) | 14 |
| BaeGI | GKGCMC | 1 cut(s) | 650 |
| BanI | GGYRCC | 2 cut(s) | 121, 612 |
| BanII | GRGCYC | 1 cut(s) | 650 |
| BauI | CACGAG | 2 cut(s) | 475, 524 |
| BbrPI | CACGTG | 1 cut(s) | 701 |
| BbvI | GCAGC | 1 cut(s) | 769 |
| BccI | CCATC | 1 cut(s) | 93 |
| BciT130I | CCWGG | 1 cut(s) | 668 |
| BciVI | GTATCC | 1 cut(s) | 688 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 720 |
| BfaI | CTAG | 2 cut(s) | 15, 299 |
| BfmI | CTRYAG | 2 cut(s) | 498, 783 |
| BfoI | RGCGCY | 2 cut(s) | 299, 310 |
| BfuI | GTATCC | 1 cut(s) | 688 |
| BisI | GCNGC | 1 cut(s) | 783 |
| BlnI | CCTAGG | 1 cut(s) | 14 |
| BlsI | GCNGC | 1 cut(s) | 784 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 668 |
| BmgT120I | GGNCC | 2 cut(s) | 646, 647 |
| BmiI | GGNNCC | 3 cut(s) | 123, 614, 648 |
| BmrFI | CCNGG | 2 cut(s) | 131, 668 |
| BmsI | GCATC | 4 cut(s) | 174, 213, 265, 769 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 385, 417 |
| BpuEI | CTTGAG | 2 cut(s) | 153, 192 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 1 cut(s) | 701 |
| BsaHI | GRCGYC | 1 cut(s) | 229 |
| BsaJI | CCNNGG | 1 cut(s) | 14 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 248, 278 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 596, 597, 623, 667 |
| Bse3DI | GCAATG | 1 cut(s) | 322 |
| BseBI | CCWGG | 1 cut(s) | 668 |
| BseDI | CCNNGG | 1 cut(s) | 14 |
| BseGI | GGATG | 2 cut(s) | 280, 784 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 596, 597, 623, 667 |
| BseMI | GCAATG | 1 cut(s) | 322 |
| BseMII | CTCAG | 2 cut(s) | 262, 495 |
| BseRI | GAGGAG | 1 cut(s) | 323 |
| BseSI | GKGCMC | 1 cut(s) | 650 |
| BseXI | GCAGC | 1 cut(s) | 769 |
| BshFI | GGCC | 2 cut(s) | 547, 648 |
| BshNI | GGYRCC | 2 cut(s) | 121, 612 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 2 cut(s) | 642, 651 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 596, 597, 623, 667 |
| BsmAI | GTCTC | 1 cut(s) | 720 |
| BsmBI | CGTCTC | 1 cut(s) | 720 |
| BsmFI | GGGAC | 2 cut(s) | 642, 651 |
| BsnI | GGCC | 2 cut(s) | 547, 648 |
| Bsp120I | GGGCCC | 1 cut(s) | 646 |
| Bsp1286I | GDGCHC | 1 cut(s) | 650 |
| Bsp143I | GATC | 3 cut(s) | 133, 267, 471 |
| BspACI | CCGC | 4 cut(s) | 610, 658, 679, 692 |
| BspANI | GGCC | 2 cut(s) | 547, 648 |
| BspCNI | CTCAG | 2 cut(s) | 261, 496 |
| BspHI | TCATGA | 1 cut(s) | 568 |
| BspLI | GGNNCC | 3 cut(s) | 123, 614, 648 |
| BspMAI | CTGCAG | 1 cut(s) | 787 |
| BspPI | GGATC | 2 cut(s) | 141, 479 |
| BspQI | GCTCTTC | 1 cut(s) | 297 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 612 |
| BsrBI | CCGCTC | 1 cut(s) | 610 |
| BsrDI | GCAATG | 1 cut(s) | 322 |
| BssECI | CCNNGG | 1 cut(s) | 14 |
| BssMI | GATC | 3 cut(s) | 133, 267, 471 |
| BssNI | GRCGYC | 1 cut(s) | 229 |
| BssSI | CACGAG | 2 cut(s) | 475, 524 |
| BssT1I | CCWWGG | 1 cut(s) | 14 |
| Bst2BI | CACGAG | 2 cut(s) | 475, 524 |
| Bst2UI | CCWGG | 1 cut(s) | 668 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 449 |
| Bst6I | CTCTTC | 1 cut(s) | 297 |
| BstACI | GRCGYC | 1 cut(s) | 229 |
| BstBAI | YACGTR | 1 cut(s) | 701 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 204 |
| BstDEI | CTNAG | 4 cut(s) | 248, 504, 558, 618 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 280, 784 |
| BstH2I | RGCGCY | 2 cut(s) | 299, 310 |
| BstHHI | GCGC | 4 cut(s) | 298, 309, 369, 603 |
| BstKTI | GATC | 3 cut(s) | 136, 270, 474 |
| BstMAI | GTCTC | 1 cut(s) | 720 |
| BstMBI | GATC | 3 cut(s) | 133, 267, 471 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 304, 607 |
| BstNI | CCWGG | 1 cut(s) | 668 |
| BstNSI | RCATGY | 2 cut(s) | 167, 206 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 129, 666 |
| BstSFI | CTRYAG | 2 cut(s) | 498, 783 |
| BstSLI | GKGCMC | 1 cut(s) | 650 |
| BstV1I | GCAGC | 1 cut(s) | 769 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuI | GTATCC | 1 cut(s) | 688 |
| BsuRI | GGCC | 2 cut(s) | 547, 648 |
| BtsCI | GGATG | 2 cut(s) | 280, 784 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 204 |
| CciI | TCATGA | 1 cut(s) | 568 |
| CfoI | GCGC | 4 cut(s) | 298, 309, 369, 603 |
| Cfr13I | GGNCC | 2 cut(s) | 646, 647 |
| CseI | GACGC | 1 cut(s) | 237 |
| Csp6I | GTAC | 3 cut(s) | 450, 521, 613 |
| CviAII | CATG | 5 cut(s) | 31, 164, 203, 512, 569 |
| CviJI | RGCY | 9 cut(s) | 19, 48, 286, 425, 490, 503, 547, 648, 758 |
| CviKI_1 | RGCY | 9 cut(s) | 19, 48, 286, 425, 490, 503, 547, 648, 758 |
| CviQI | GTAC | 3 cut(s) | 450, 521, 613 |
| DdeI | CTNAG | 4 cut(s) | 248, 504, 558, 618 |
| DpnI | GATC | 3 cut(s) | 135, 269, 473 |
| DpnII | GATC | 3 cut(s) | 133, 267, 471 |
| DraIII | CACNNNGTG | 1 cut(s) | 704 |
| Eam1104I | CTCTTC | 1 cut(s) | 297 |
| EarI | CTCTTC | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 1 cut(s) | 14 |
| Eco147I | AGGCCT | 1 cut(s) | 547 |
| Eco24I | GRGCYC | 1 cut(s) | 650 |
| Eco47III | AGCGCT | 2 cut(s) | 297, 308 |
| Eco57I | CTGAAG | 1 cut(s) | 780 |
| Eco72I | CACGTG | 1 cut(s) | 701 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 377 |
| EcoRII | CCWGG | 1 cut(s) | 666 |
| EcoT14I | CCWWGG | 1 cut(s) | 14 |
| EcoT38I | GRGCYC | 1 cut(s) | 650 |
| ErhI | CCWWGG | 1 cut(s) | 14 |
| Esp3I | CGTCTC | 1 cut(s) | 720 |
| FaeI | CATG | 5 cut(s) | 34, 167, 206, 515, 572 |
| FaqI | GGGAC | 2 cut(s) | 642, 651 |
| FatI | CATG | 5 cut(s) | 30, 163, 202, 511, 568 |
| FauNDI | CATATG | 1 cut(s) | 234 |
| Fnu4HI | GCNGC | 1 cut(s) | 783 |
| FokI | GGATG | 2 cut(s) | 287, 791 |
| FriOI | GRGCYC | 1 cut(s) | 650 |
| Fsp4HI | GCNGC | 1 cut(s) | 783 |
| FspBI | CTAG | 2 cut(s) | 15, 299 |
| GlaI | GCGC | 4 cut(s) | 297, 308, 368, 602 |
| GluI | GCNGC | 1 cut(s) | 783 |
| HaeII | RGCGCY | 2 cut(s) | 299, 310 |
| HaeIII | GGCC | 2 cut(s) | 547, 648 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 237 |
| HhaI | GCGC | 4 cut(s) | 298, 309, 369, 603 |
| Hin1I | GRCGYC | 1 cut(s) | 229 |
| Hin1II | CATG | 5 cut(s) | 34, 167, 206, 515, 572 |
| Hin6I | GCGC | 4 cut(s) | 296, 307, 367, 601 |
| HinP1I | GCGC | 4 cut(s) | 296, 307, 367, 601 |
| HinfI | GANTC | 3 cut(s) | 38, 326, 400 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 2 cut(s) | 716, 730 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 251 |
| Hpy188III | TCNNGA | 4 cut(s) | 181, 475, 526, 569 |
| Hpy99I | CGWCG | 1 cut(s) | 231 |
| HpyAV | CCTTC | 3 cut(s) | 340, 421, 665 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 449 |
| HpyCH4IV | ACGT | 4 cut(s) | 519, 640, 700, 729 |
| HpyCH4V | TGCA | 5 cut(s) | 148, 278, 587, 772, 785 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 304, 607 |
| HpyF3I | CTNAG | 4 cut(s) | 248, 504, 558, 618 |
| HpySE526I | ACGT | 4 cut(s) | 519, 640, 700, 729 |
| Hsp92I | GRCGYC | 1 cut(s) | 229 |
| Hsp92II | CATG | 5 cut(s) | 34, 167, 206, 515, 572 |
| HspAI | GCGC | 4 cut(s) | 296, 307, 367, 601 |
| KpnI | GGTACC | 1 cut(s) | 616 |
| Kzo9I | GATC | 3 cut(s) | 133, 267, 471 |
| LguI | GCTCTTC | 1 cut(s) | 297 |
| LmnI | GCTCC | 1 cut(s) | 607 |
| LpnPI | CCDG | 6 cut(s) | 30, 104, 144, 351, 653, 680 |
| Lsp1109I | GCAGC | 1 cut(s) | 769 |
| LweI | GCATC | 4 cut(s) | 174, 213, 265, 769 |
| MaeI | CTAG | 2 cut(s) | 15, 299 |
| MaeII | ACGT | 4 cut(s) | 519, 640, 700, 729 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 3 cut(s) | 135, 269, 473 |
| MbiI | CCGCTC | 1 cut(s) | 610 |
| MboI | GATC | 3 cut(s) | 133, 267, 471 |
| MboII | GAAGA | 6 cut(s) | 314, 378, 719, 722, 725, 773 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 650 |
| MluCI | AATT | 4 cut(s) | 377, 532, 538, 577 |
| MlyI | GAGTC | 2 cut(s) | 32, 394 |
| MmeI | TCCRAC | 1 cut(s) | 445 |
| MnlI | CCTC | 8 cut(s) | 341, 344, 471, 522, 565, 590, 628, 739 |
| MseI | TTAA | 1 cut(s) | 732 |
| MslI | CAYNNNNRTG | 1 cut(s) | 777 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 131, 668 |
| MvaI | CCWGG | 1 cut(s) | 668 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 304, 607 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 234 |
| NdeII | GATC | 3 cut(s) | 133, 267, 471 |
| NlaIII | CATG | 5 cut(s) | 34, 167, 206, 515, 572 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 614, 648 |
| NspI | RCATGY | 2 cut(s) | 167, 206 |
| PaeI | GCATGC | 2 cut(s) | 167, 206 |
| PagI | TCATGA | 1 cut(s) | 568 |
| PceI | AGGCCT | 1 cut(s) | 547 |
| PciSI | GCTCTTC | 1 cut(s) | 297 |
| PfeI | GAWTC | 1 cut(s) | 326 |
| PkrI | GCNGC | 1 cut(s) | 784 |
| PleI | GAGTC | 2 cut(s) | 32, 394 |
| PmaCI | CACGTG | 1 cut(s) | 701 |
| PmlI | CACGTG | 1 cut(s) | 701 |
| PpsI | GAGTC | 2 cut(s) | 32, 394 |
| Ppu21I | YACGTR | 1 cut(s) | 701 |
| PsiI | TTATAA | 2 cut(s) | 537, 582 |
| Psp6I | CCWGG | 1 cut(s) | 666 |
| PspCI | CACGTG | 1 cut(s) | 701 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 666 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 614, 648 |
| PspOMI | GGGCCC | 1 cut(s) | 646 |
| PspPI | GGNCC | 2 cut(s) | 646, 647 |
| PstI | CTGCAG | 1 cut(s) | 787 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 3 cut(s) | 451, 522, 614 |
| RsaNI | GTAC | 3 cut(s) | 450, 521, 613 |
| RseI | CAYNNNNRTG | 1 cut(s) | 777 |
| SapI | GCTCTTC | 1 cut(s) | 297 |
| SaqAI | TTAA | 1 cut(s) | 732 |
| SatI | GCNGC | 1 cut(s) | 783 |
| Sau3AI | GATC | 3 cut(s) | 133, 267, 471 |
| Sau96I | GGNCC | 2 cut(s) | 646, 647 |
| SchI | GAGTC | 2 cut(s) | 32, 394 |
| ScrFI | CCNGG | 2 cut(s) | 131, 668 |
| SduI | GDGCHC | 1 cut(s) | 650 |
| SfaNI | GCATC | 4 cut(s) | 174, 213, 265, 769 |
| SfcI | CTRYAG | 2 cut(s) | 498, 783 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 777 |
| SmlI | CTYRAG | 2 cut(s) | 168, 207 |
| SmoI | CTYRAG | 2 cut(s) | 168, 207 |
| SphI | GCATGC | 2 cut(s) | 167, 206 |
| Sse9I | AATT | 4 cut(s) | 377, 532, 538, 577 |
| SseBI | AGGCCT | 1 cut(s) | 547 |
| SsiI | CCGC | 4 cut(s) | 610, 658, 679, 692 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 2 cut(s) | 15, 299 |
| StuI | AGGCCT | 1 cut(s) | 547 |
| StyD4I | CCNGG | 2 cut(s) | 129, 666 |
| StyI | CCWWGG | 1 cut(s) | 14 |
| TaaI | ACNGT | 2 cut(s) | 62, 449 |
| TaiI | ACGT | 4 cut(s) | 522, 643, 703, 732 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 266 |
| TasI | AATT | 4 cut(s) | 377, 532, 538, 577 |
| TfiI | GAWTC | 1 cut(s) | 326 |
| Tru1I | TTAA | 1 cut(s) | 732 |
| Tru9I | TTAA | 1 cut(s) | 732 |
| TseI | GCWGC | 1 cut(s) | 782 |
| TspDTI | ATGAA | 4 cut(s) | 24, 473, 557, 780 |
| TspGWI | ACGGA | 1 cut(s) | 484 |
| XapI | RAATTY | 1 cut(s) | 377 |
| XceI | RCATGY | 2 cut(s) | 167, 206 |
| XmaJI | CCTAGG | 1 cut(s) | 14 |
| XspI | CTAG | 2 cut(s) | 15, 299 |