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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 1 cut(s) | 569 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 806 |
| AccII | CGCG | 2 cut(s) | 23, 669 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AclWI | GGATC | 1 cut(s) | 798 |
| AcoI | YGGCCR | 2 cut(s) | 190, 436 |
| AcyI | GRCGYC | 1 cut(s) | 570 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 46, 151, 680, 751, 772, 806 |
| AgsI | TTSAA | 2 cut(s) | 264, 510 |
| AluBI | AGCT | 7 cut(s) | 64, 158, 316, 338, 404, 562, 584 |
| AluI | AGCT | 7 cut(s) | 64, 158, 316, 338, 404, 562, 584 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 4 cut(s) | 177, 250, 423, 496 |
| AlwI | GGATC | 1 cut(s) | 798 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 2 cut(s) | 190, 436 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 159, 405 |
| AspLEI | GCGC | 3 cut(s) | 25, 572, 671 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BalI | TGGCCA | 2 cut(s) | 192, 438 |
| BanI | GGYRCC | 1 cut(s) | 569 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 4 cut(s) | 57, 230, 476, 786 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 3 cut(s) | 126, 172, 418 |
| BcoDI | GTCTC | 4 cut(s) | 177, 250, 423, 496 |
| BfaI | CTAG | 1 cut(s) | 624 |
| BfoI | RGCGCY | 1 cut(s) | 573 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 1 cut(s) | 571 |
| BmsI | GCATC | 1 cut(s) | 333 |
| BpiI | GAAGAC | 4 cut(s) | 57, 230, 476, 786 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 2 cut(s) | 215, 461 |
| BsaHI | GRCGYC | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 2 cut(s) | 384, 630 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 46, 151, 680, 751, 772, 806 |
| Bse1I | ACTGG | 1 cut(s) | 811 |
| Bse8I | GATNNNNATC | 2 cut(s) | 215, 461 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseDI | CCNNGG | 2 cut(s) | 384, 630 |
| BseJI | GATNNNNATC | 2 cut(s) | 215, 461 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 46, 151, 680, 751, 772, 806 |
| BseNI | ACTGG | 1 cut(s) | 811 |
| BseRI | GAGGAG | 1 cut(s) | 696 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BsgI | GTGCAG | 2 cut(s) | 234, 480 |
| Bsh1236I | CGCG | 2 cut(s) | 23, 669 |
| BshFI | GGCC | 2 cut(s) | 192, 438 |
| BshNI | GGYRCC | 1 cut(s) | 569 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiSI | CCGG | 1 cut(s) | 650 |
| BslFI | GGGAC | 1 cut(s) | 725 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 46, 151, 680, 751, 772, 806 |
| BsmAI | GTCTC | 4 cut(s) | 177, 250, 423, 496 |
| BsmBI | CGTCTC | 2 cut(s) | 250, 496 |
| BsmFI | GGGAC | 1 cut(s) | 725 |
| BsnI | GGCC | 2 cut(s) | 192, 438 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 3 cut(s) | 216, 462, 790 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspANI | GGCC | 2 cut(s) | 192, 438 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspFNI | CGCG | 2 cut(s) | 23, 669 |
| BspHI | TCATGA | 3 cut(s) | 310, 327, 556 |
| BspLI | GGNNCC | 1 cut(s) | 571 |
| BspPI | GGATC | 1 cut(s) | 798 |
| BspQI | GCTCTTC | 2 cut(s) | 165, 411 |
| BspT107I | GGYRCC | 1 cut(s) | 569 |
| BsrI | ACTGG | 1 cut(s) | 811 |
| BssECI | CCNNGG | 2 cut(s) | 384, 630 |
| BssMI | GATC | 3 cut(s) | 216, 462, 790 |
| BssNI | GRCGYC | 1 cut(s) | 570 |
| Bst6I | CTCTTC | 2 cut(s) | 165, 411 |
| BstACI | GRCGYC | 1 cut(s) | 570 |
| BstDEI | CTNAG | 3 cut(s) | 393, 639, 702 |
| BstDSI | CCRYGG | 2 cut(s) | 384, 630 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstFNI | CGCG | 2 cut(s) | 23, 669 |
| BstH2I | RGCGCY | 1 cut(s) | 573 |
| BstHHI | GCGC | 3 cut(s) | 25, 572, 671 |
| BstKTI | GATC | 3 cut(s) | 219, 465, 793 |
| BstMAI | GTCTC | 4 cut(s) | 177, 250, 423, 496 |
| BstMBI | GATC | 3 cut(s) | 216, 462, 790 |
| BstUI | CGCG | 2 cut(s) | 23, 669 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 4 cut(s) | 57, 230, 476, 786 |
| BsuRI | GGCC | 2 cut(s) | 192, 438 |
| BtgI | CCRYGG | 2 cut(s) | 384, 630 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsIMutI | CAGTG | 2 cut(s) | 251, 497 |
| CciI | TCATGA | 3 cut(s) | 310, 327, 556 |
| CfoI | GCGC | 3 cut(s) | 25, 572, 671 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| CseI | GACGC | 1 cut(s) | 29 |
| CviAII | CATG | 6 cut(s) | 13, 311, 328, 557, 574, 787 |
| DdeI | CTNAG | 3 cut(s) | 393, 639, 702 |
| DinI | GGCGCC | 1 cut(s) | 571 |
| DpnI | GATC | 3 cut(s) | 218, 464, 792 |
| DpnII | GATC | 3 cut(s) | 216, 462, 790 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EaeI | YGGCCR | 2 cut(s) | 190, 436 |
| Eam1104I | CTCTTC | 2 cut(s) | 165, 411 |
| EarI | CTCTTC | 2 cut(s) | 165, 411 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| EgeI | GGCGCC | 1 cut(s) | 571 |
| EheI | GGCGCC | 1 cut(s) | 571 |
| Esp3I | CGTCTC | 2 cut(s) | 250, 496 |
| FaeI | CATG | 6 cut(s) | 16, 314, 331, 560, 577, 790 |
| FaqI | GGGAC | 1 cut(s) | 725 |
| FatI | CATG | 6 cut(s) | 12, 310, 327, 556, 573, 786 |
| FauNDI | CATATG | 1 cut(s) | 736 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 1 cut(s) | 624 |
| GlaI | GCGC | 3 cut(s) | 24, 571, 670 |
| GluI | GCNGC | 1 cut(s) | 83 |
| HaeII | RGCGCY | 1 cut(s) | 573 |
| HaeIII | GGCC | 2 cut(s) | 192, 438 |
| HapII | CCGG | 1 cut(s) | 650 |
| HgaI | GACGC | 1 cut(s) | 29 |
| HhaI | GCGC | 3 cut(s) | 25, 572, 671 |
| Hin1I | GRCGYC | 1 cut(s) | 570 |
| Hin1II | CATG | 6 cut(s) | 16, 314, 331, 560, 577, 790 |
| Hin6I | GCGC | 3 cut(s) | 23, 570, 669 |
| HinP1I | GCGC | 3 cut(s) | 23, 570, 669 |
| HinfI | GANTC | 4 cut(s) | 104, 226, 472, 653 |
| HpaII | CCGG | 1 cut(s) | 650 |
| Hpy188I | TCNGA | 6 cut(s) | 154, 177, 276, 400, 423, 522 |
| Hpy188III | TCNNGA | 9 cut(s) | 101, 116, 220, 311, 328, 466, 557, 650, 794 |
| HpyAV | CCTTC | 3 cut(s) | 247, 493, 749 |
| HpyCH4IV | ACGT | 5 cut(s) | 96, 295, 333, 541, 579 |
| HpyCH4V | TGCA | 4 cut(s) | 251, 290, 497, 536 |
| HpyF3I | CTNAG | 3 cut(s) | 393, 639, 702 |
| HpySE526I | ACGT | 5 cut(s) | 96, 295, 333, 541, 579 |
| Hsp92I | GRCGYC | 1 cut(s) | 570 |
| Hsp92II | CATG | 6 cut(s) | 16, 314, 331, 560, 577, 790 |
| HspAI | GCGC | 3 cut(s) | 23, 570, 669 |
| KasI | GGCGCC | 1 cut(s) | 569 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 3 cut(s) | 216, 462, 790 |
| LguI | GCTCTTC | 2 cut(s) | 165, 411 |
| LmnI | GCTCC | 2 cut(s) | 30, 691 |
| LpnPI | CCDG | 7 cut(s) | 122, 129, 276, 522, 663, 714, 792 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 1 cut(s) | 333 |
| MaeI | CTAG | 1 cut(s) | 624 |
| MaeII | ACGT | 5 cut(s) | 96, 295, 333, 541, 579 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 3 cut(s) | 218, 464, 792 |
| MboI | GATC | 3 cut(s) | 216, 462, 790 |
| MboII | GAAGA | 8 cut(s) | 62, 152, 235, 376, 398, 481, 622, 791 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MlsI | TGGCCA | 2 cut(s) | 192, 438 |
| MluCI | AATT | 3 cut(s) | 268, 514, 715 |
| MluNI | TGGCCA | 2 cut(s) | 192, 438 |
| Mly113I | GGCGCC | 1 cut(s) | 570 |
| MlyI | GAGTC | 4 cut(s) | 98, 220, 466, 662 |
| MmeI | TCCRAC | 1 cut(s) | 378 |
| MnlI | CCTC | 6 cut(s) | 40, 50, 152, 674, 677, 745 |
| Mox20I | TGGCCA | 2 cut(s) | 192, 438 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 2 cut(s) | 159, 405 |
| MscI | TGGCCA | 2 cut(s) | 192, 438 |
| MseI | TTAA | 1 cut(s) | 820 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| Msp20I | TGGCCA | 2 cut(s) | 192, 438 |
| MspI | CCGG | 1 cut(s) | 650 |
| MvnI | CGCG | 2 cut(s) | 23, 669 |
| NarI | GGCGCC | 1 cut(s) | 570 |
| NdeI | CATATG | 1 cut(s) | 736 |
| NdeII | GATC | 3 cut(s) | 216, 462, 790 |
| NlaIII | CATG | 6 cut(s) | 16, 314, 331, 560, 577, 790 |
| NlaIV | GGNNCC | 1 cut(s) | 571 |
| NmeAIII | GCCGAG | 1 cut(s) | 791 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 3 cut(s) | 310, 327, 556 |
| PciSI | GCTCTTC | 2 cut(s) | 165, 411 |
| PdmI | GAANNNNTTC | 2 cut(s) | 159, 405 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 806 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 4 cut(s) | 98, 220, 466, 661 |
| PluTI | GGCGCC | 1 cut(s) | 573 |
| PpsI | GAGTC | 4 cut(s) | 98, 220, 466, 661 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 1 cut(s) | 571 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SapI | GCTCTTC | 2 cut(s) | 165, 411 |
| SaqAI | TTAA | 1 cut(s) | 820 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau3AI | GATC | 3 cut(s) | 216, 462, 790 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 4 cut(s) | 98, 220, 466, 662 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SfaNI | GCATC | 1 cut(s) | 333 |
| SfoI | GGCGCC | 1 cut(s) | 571 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 268, 514, 715 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspDI | GGCGCC | 1 cut(s) | 569 |
| SspMI | CTAG | 1 cut(s) | 624 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| TaiI | ACGT | 5 cut(s) | 99, 298, 336, 544, 582 |
| TaqI | TCGA | 2 cut(s) | 219, 465 |
| TasI | AATT | 3 cut(s) | 268, 514, 715 |
| Tru1I | TTAA | 1 cut(s) | 820 |
| Tru9I | TTAA | 1 cut(s) | 820 |
| TscAI | CASTG | 2 cut(s) | 258, 504 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 6 cut(s) | 29, 48, 299, 344, 545, 590 |
| TspRI | CASTG | 2 cut(s) | 258, 504 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 806 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XmnI | GAANNNNTTC | 2 cut(s) | 159, 405 |
| XspI | CTAG | 1 cut(s) | 624 |