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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 468, 626 |
| AccII | CGCG | 1 cut(s) | 453 |
| AciI | CCGC | 1 cut(s) | 768 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcoI | YGGCCR | 1 cut(s) | 613 |
| AcyI | GRCGYC | 2 cut(s) | 469, 657 |
| AdeI | CACNNNGTG | 1 cut(s) | 808 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 463, 464, 729 |
| AgsI | TTSAA | 4 cut(s) | 353, 581, 664, 824 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 346, 356, 645, 800 |
| AluI | AGCT | 4 cut(s) | 346, 356, 645, 800 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AlwI | GGATC | 1 cut(s) | 405 |
| AoxI | GGCC | 1 cut(s) | 613 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 471, 781 |
| AsuHPI | GGTGA | 1 cut(s) | 757 |
| AsuII | TTCGAA | 1 cut(s) | 78 |
| BaeGI | GKGCMC | 1 cut(s) | 736 |
| BalI | TGGCCA | 1 cut(s) | 615 |
| BanI | GGYRCC | 2 cut(s) | 468, 626 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BauI | CACGAG | 1 cut(s) | 750 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BccI | CCATC | 2 cut(s) | 126, 280 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 125, 159 |
| BciVI | GTATCC | 2 cut(s) | 490, 730 |
| BclI | TGATCA | 1 cut(s) | 228 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 3 cut(s) | 57, 122, 836 |
| BfmI | CTRYAG | 1 cut(s) | 529 |
| BfoI | RGCGCY | 1 cut(s) | 472 |
| BfuI | GTATCC | 2 cut(s) | 490, 730 |
| BglII | AGATCT | 1 cut(s) | 746 |
| BmiI | GGNNCC | 2 cut(s) | 470, 628 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| Bpu14I | TTCGAA | 1 cut(s) | 78 |
| BpuEI | CTTGAG | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 2 cut(s) | 469, 657 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaWI | WCCGGW | 1 cut(s) | 722 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 463, 464, 729 |
| BseGI | GGATG | 3 cut(s) | 22, 384, 512 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 463, 464, 729 |
| BseMII | CTCAG | 1 cut(s) | 678 |
| BseSI | GKGCMC | 1 cut(s) | 736 |
| Bsh1236I | CGCG | 1 cut(s) | 453 |
| BshFI | GGCC | 1 cut(s) | 615 |
| BshNI | GGYRCC | 2 cut(s) | 468, 626 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsiSI | CCGG | 1 cut(s) | 723 |
| BslFI | GGGAC | 1 cut(s) | 440 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 463, 464, 729 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 440 |
| BsnI | GGCC | 1 cut(s) | 615 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp119I | TTCGAA | 1 cut(s) | 78 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 736 |
| Bsp143I | GATC | 4 cut(s) | 228, 410, 746, 832 |
| BspACI | CCGC | 1 cut(s) | 768 |
| BspANI | GGCC | 1 cut(s) | 615 |
| BspCNI | CTCAG | 1 cut(s) | 679 |
| BspFNI | CGCG | 1 cut(s) | 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 470, 628 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BspT104I | TTCGAA | 1 cut(s) | 78 |
| BspT107I | GGYRCC | 2 cut(s) | 468, 626 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BssMI | GATC | 4 cut(s) | 228, 410, 746, 832 |
| BssNI | GRCGYC | 2 cut(s) | 469, 657 |
| BssSI | CACGAG | 1 cut(s) | 750 |
| Bst2BI | CACGAG | 1 cut(s) | 750 |
| BstACI | GRCGYC | 2 cut(s) | 469, 657 |
| BstBI | TTCGAA | 1 cut(s) | 78 |
| BstDEI | CTNAG | 3 cut(s) | 459, 639, 687 |
| BstEII | GGTNACC | 1 cut(s) | 542 |
| BstF5I | GGATG | 3 cut(s) | 22, 384, 512 |
| BstFNI | CGCG | 1 cut(s) | 453 |
| BstH2I | RGCGCY | 1 cut(s) | 472 |
| BstHHI | GCGC | 2 cut(s) | 471, 781 |
| BstKTI | GATC | 4 cut(s) | 231, 413, 749, 835 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 4 cut(s) | 228, 410, 746, 832 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 475, 665, 776, 797 |
| BstPI | GGTNACC | 1 cut(s) | 542 |
| BstSFI | CTRYAG | 1 cut(s) | 529 |
| BstSLI | GKGCMC | 1 cut(s) | 736 |
| BstUI | CGCG | 1 cut(s) | 453 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstX2I | RGATCY | 2 cut(s) | 410, 746 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 623 |
| BstYI | RGATCY | 2 cut(s) | 410, 746 |
| BsuI | GTATCC | 2 cut(s) | 490, 730 |
| BsuRI | GGCC | 1 cut(s) | 615 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 3 cut(s) | 22, 384, 512 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 471, 781 |
| CseI | GACGC | 2 cut(s) | 442, 665 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 4 cut(s) | 13, 341, 377, 617 |
| CviJI | RGCY | 7 cut(s) | 64, 141, 346, 356, 615, 645, 800 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 141, 346, 356, 615, 645, 800 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 3 cut(s) | 459, 639, 687 |
| DinI | GGCGCC | 1 cut(s) | 470 |
| DpnI | GATC | 4 cut(s) | 230, 412, 748, 834 |
| DpnII | GATC | 4 cut(s) | 228, 410, 746, 832 |
| DraIII | CACNNNGTG | 1 cut(s) | 808 |
| EaeI | YGGCCR | 1 cut(s) | 613 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| Eco91I | GGTNACC | 1 cut(s) | 542 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoO65I | GGTNACC | 1 cut(s) | 542 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| EgeI | GGCGCC | 1 cut(s) | 470 |
| EheI | GGCGCC | 1 cut(s) | 470 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 4 cut(s) | 16, 344, 380, 620 |
| FaqI | GGGAC | 1 cut(s) | 440 |
| FatI | CATG | 4 cut(s) | 12, 340, 376, 616 |
| FbaI | TGATCA | 1 cut(s) | 228 |
| FokI | GGATG | 3 cut(s) | 29, 371, 519 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| FspBI | CTAG | 3 cut(s) | 57, 122, 836 |
| GlaI | GCGC | 2 cut(s) | 470, 780 |
| HaeII | RGCGCY | 1 cut(s) | 472 |
| HaeIII | GGCC | 1 cut(s) | 615 |
| HapII | CCGG | 1 cut(s) | 723 |
| HgaI | GACGC | 2 cut(s) | 442, 665 |
| HhaI | GCGC | 2 cut(s) | 471, 781 |
| Hin1I | GRCGYC | 2 cut(s) | 469, 657 |
| Hin1II | CATG | 4 cut(s) | 16, 344, 380, 620 |
| Hin6I | GCGC | 2 cut(s) | 469, 779 |
| HinP1I | GCGC | 2 cut(s) | 469, 779 |
| HinfI | GANTC | 6 cut(s) | 4, 20, 104, 256, 327, 683 |
| HpaII | CCGG | 1 cut(s) | 723 |
| HphI | GGTGA | 1 cut(s) | 757 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 435, 688 |
| Hpy188III | TCNNGA | 9 cut(s) | 116, 170, 341, 408, 504, 708, 752, 824, 836 |
| HpyAV | CCTTC | 4 cut(s) | 54, 152, 533, 670 |
| HpyCH4IV | ACGT | 1 cut(s) | 583 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 320 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 475, 665, 776, 797 |
| HpyF3I | CTNAG | 3 cut(s) | 459, 639, 687 |
| HpySE526I | ACGT | 1 cut(s) | 583 |
| Hsp92I | GRCGYC | 2 cut(s) | 469, 657 |
| Hsp92II | CATG | 4 cut(s) | 16, 344, 380, 620 |
| HspAI | GCGC | 2 cut(s) | 469, 779 |
| KasI | GGCGCC | 1 cut(s) | 468 |
| Ksp22I | TGATCA | 1 cut(s) | 228 |
| Kzo9I | GATC | 4 cut(s) | 228, 410, 746, 832 |
| LpnPI | CCDG | 6 cut(s) | 122, 129, 306, 489, 597, 736 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeI | CTAG | 3 cut(s) | 57, 122, 836 |
| MaeII | ACGT | 1 cut(s) | 583 |
| MaeIII | GTNAC | 5 cut(s) | 8, 101, 364, 542, 763 |
| MalI | GATC | 4 cut(s) | 230, 412, 748, 834 |
| MboI | GATC | 4 cut(s) | 228, 410, 746, 832 |
| MboII | GAAGA | 8 cut(s) | 59, 62, 92, 259, 265, 406, 767, 839 |
| MflI | RGATCY | 2 cut(s) | 410, 746 |
| MhlI | GDGCHC | 2 cut(s) | 348, 736 |
| MlsI | TGGCCA | 1 cut(s) | 615 |
| MluCI | AATT | 5 cut(s) | 306, 403, 442, 487, 759 |
| MluNI | TGGCCA | 1 cut(s) | 615 |
| Mly113I | GGCGCC | 1 cut(s) | 469 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 692 |
| MnlI | CCTC | 5 cut(s) | 456, 589, 593, 619, 681 |
| Mox20I | TGGCCA | 1 cut(s) | 615 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 615 |
| MseI | TTAA | 3 cut(s) | 159, 198, 206 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 389, 621 |
| Msp20I | TGGCCA | 1 cut(s) | 615 |
| MspI | CCGG | 1 cut(s) | 723 |
| MvnI | CGCG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 475, 665, 776, 797 |
| NarI | GGCGCC | 1 cut(s) | 469 |
| NdeII | GATC | 4 cut(s) | 228, 410, 746, 832 |
| NlaIII | CATG | 4 cut(s) | 16, 344, 380, 620 |
| NlaIV | GGNNCC | 2 cut(s) | 470, 628 |
| NmuCI | GTSAC | 4 cut(s) | 8, 101, 364, 763 |
| NspV | TTCGAA | 1 cut(s) | 78 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 20, 327 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 691 |
| PluTI | GGCGCC | 1 cut(s) | 472 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 691 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| PspEI | GGTNACC | 1 cut(s) | 542 |
| PspN4I | GGNNCC | 2 cut(s) | 470, 628 |
| PsuI | RGATCY | 2 cut(s) | 410, 746 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 389, 621 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 3 cut(s) | 159, 198, 206 |
| Sau3AI | GATC | 4 cut(s) | 228, 410, 746, 832 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 692 |
| SduI | GDGCHC | 2 cut(s) | 348, 736 |
| SetI | ASST | 9 cut(s) | 123, 338, 348, 358, 544, 586, 647, 673, 802 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SfcI | CTRYAG | 1 cut(s) | 529 |
| SfoI | GGCGCC | 1 cut(s) | 470 |
| SfuI | TTCGAA | 1 cut(s) | 78 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 389, 621 |
| SmlI | CTYRAG | 1 cut(s) | 26 |
| SmoI | CTYRAG | 1 cut(s) | 26 |
| Sse9I | AATT | 5 cut(s) | 306, 403, 442, 487, 759 |
| SsiI | CCGC | 1 cut(s) | 768 |
| SspDI | GGCGCC | 1 cut(s) | 468 |
| SspI | AATATT | 1 cut(s) | 215 |
| SspMI | CTAG | 3 cut(s) | 57, 122, 836 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| TaiI | ACGT | 1 cut(s) | 586 |
| TaqI | TCGA | 4 cut(s) | 78, 304, 407, 709 |
| TasI | AATT | 5 cut(s) | 306, 403, 442, 487, 759 |
| TfiI | GAWTC | 2 cut(s) | 20, 327 |
| Tru1I | TTAA | 3 cut(s) | 159, 198, 206 |
| Tru9I | TTAA | 3 cut(s) | 159, 198, 206 |
| TseFI | GTSAC | 4 cut(s) | 8, 101, 364, 763 |
| Tsp45I | GTSAC | 4 cut(s) | 8, 101, 364, 763 |
| TspDTI | ATGAA | 4 cut(s) | 60, 329, 374, 407 |
| TspGWI | ACGGA | 3 cut(s) | 89, 262, 403 |
| XbaI | TCTAGA | 1 cut(s) | 835 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 57, 122, 836 |