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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 663 |
| AccB1I | GGYRCC | 2 cut(s) | 618, 776 |
| AciI | CCGC | 1 cut(s) | 295 |
| AclWI | GGATC | 2 cut(s) | 485, 555 |
| AcoI | YGGCCR | 1 cut(s) | 763 |
| AcsI | RAATTY | 1 cut(s) | 362 |
| AcyI | GRCGYC | 2 cut(s) | 619, 777 |
| AfaI | GTAC | 1 cut(s) | 182 |
| AgsI | TTSAA | 3 cut(s) | 83, 310, 814 |
| AjnI | CCWGG | 1 cut(s) | 63 |
| AluBI | AGCT | 5 cut(s) | 89, 95, 496, 506, 742 |
| AluI | AGCT | 5 cut(s) | 89, 95, 496, 506, 742 |
| Alw21I | GWGCWC | 1 cut(s) | 498 |
| Alw26I | GTCTC | 1 cut(s) | 430 |
| AlwI | GGATC | 2 cut(s) | 485, 555 |
| AoxI | GGCC | 1 cut(s) | 763 |
| ApeKI | GCWGC | 1 cut(s) | 113 |
| ApoI | RAATTY | 1 cut(s) | 362 |
| AspLEI | GCGC | 3 cut(s) | 621, 779, 820 |
| BalI | TGGCCA | 1 cut(s) | 765 |
| BanI | GGYRCC | 2 cut(s) | 618, 776 |
| BanII | GRGCYC | 1 cut(s) | 498 |
| BbsI | GAAGAC | 2 cut(s) | 207, 410 |
| Bbv12I | GWGCWC | 1 cut(s) | 498 |
| BbvI | GCAGC | 1 cut(s) | 125 |
| BccI | CCATC | 4 cut(s) | 149, 276, 430, 804 |
| BciT130I | CCWGG | 1 cut(s) | 65 |
| BcoDI | GTCTC | 1 cut(s) | 430 |
| BfaI | CTAG | 2 cut(s) | 663, 743 |
| BfoI | RGCGCY | 3 cut(s) | 622, 780, 821 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 122 |
| BisI | GCNGC | 1 cut(s) | 114 |
| BlsI | GCNGC | 1 cut(s) | 115 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| BmiI | GGNNCC | 3 cut(s) | 620, 719, 778 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BmsI | GCATC | 1 cut(s) | 376 |
| BpiI | GAAGAC | 2 cut(s) | 207, 410 |
| BpmI | CTGGAG | 1 cut(s) | 161 |
| BpuEI | CTTGAG | 1 cut(s) | 75 |
| BsaHI | GRCGYC | 2 cut(s) | 619, 777 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 824 |
| Bse1I | ACTGG | 2 cut(s) | 49, 178 |
| BseBI | CCWGG | 1 cut(s) | 65 |
| BseGI | GGATG | 4 cut(s) | 144, 172, 219, 534 |
| BseNI | ACTGG | 2 cut(s) | 49, 178 |
| BseXI | GCAGC | 1 cut(s) | 125 |
| BshFI | GGCC | 1 cut(s) | 765 |
| BshNI | GGYRCC | 2 cut(s) | 618, 776 |
| BsiHKAI | GWGCWC | 1 cut(s) | 498 |
| BslFI | GGGAC | 1 cut(s) | 233 |
| BsmAI | GTCTC | 1 cut(s) | 430 |
| BsmBI | CGTCTC | 1 cut(s) | 430 |
| BsmFI | GGGAC | 1 cut(s) | 233 |
| BsnI | GGCC | 1 cut(s) | 765 |
| Bsp1286I | GDGCHC | 1 cut(s) | 498 |
| Bsp143I | GATC | 3 cut(s) | 477, 560, 659 |
| BspACI | CCGC | 1 cut(s) | 295 |
| BspANI | GGCC | 1 cut(s) | 765 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 3 cut(s) | 620, 719, 778 |
| BspPI | GGATC | 2 cut(s) | 485, 555 |
| BspT107I | GGYRCC | 2 cut(s) | 618, 776 |
| BsrI | ACTGG | 2 cut(s) | 49, 178 |
| BssMI | GATC | 3 cut(s) | 477, 560, 659 |
| BssNI | GRCGYC | 2 cut(s) | 619, 777 |
| Bst2UI | CCWGG | 1 cut(s) | 65 |
| Bst6I | CTCTTC | 1 cut(s) | 718 |
| BstACI | GRCGYC | 2 cut(s) | 619, 777 |
| BstDEI | CTNAG | 6 cut(s) | 118, 271, 444, 609, 641, 789 |
| BstEII | GGTNACC | 1 cut(s) | 692 |
| BstF5I | GGATG | 4 cut(s) | 144, 172, 219, 534 |
| BstH2I | RGCGCY | 3 cut(s) | 622, 780, 821 |
| BstHHI | GCGC | 3 cut(s) | 621, 779, 820 |
| BstKTI | GATC | 3 cut(s) | 480, 563, 662 |
| BstMAI | GTCTC | 1 cut(s) | 430 |
| BstMBI | GATC | 3 cut(s) | 477, 560, 659 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 101, 110, 122, 131, 815 |
| BstNI | CCWGG | 1 cut(s) | 65 |
| BstPI | GGTNACC | 1 cut(s) | 692 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 1 cut(s) | 125 |
| BstV2I | GAAGAC | 2 cut(s) | 207, 410 |
| BstX2I | RGATCY | 1 cut(s) | 560 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 773 |
| BstYI | RGATCY | 1 cut(s) | 560 |
| BsuRI | GGCC | 1 cut(s) | 765 |
| BtgZI | GCGATG | 1 cut(s) | 404 |
| BtsCI | GGATG | 4 cut(s) | 144, 172, 219, 534 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CfoI | GCGC | 3 cut(s) | 621, 779, 820 |
| CseI | GACGC | 1 cut(s) | 815 |
| Csp6I | GTAC | 1 cut(s) | 181 |
| CviAII | CATG | 3 cut(s) | 491, 527, 767 |
| CviQI | GTAC | 1 cut(s) | 181 |
| DdeI | CTNAG | 6 cut(s) | 118, 271, 444, 609, 641, 789 |
| DinI | GGCGCC | 2 cut(s) | 620, 778 |
| DpnI | GATC | 3 cut(s) | 479, 562, 661 |
| DpnII | GATC | 3 cut(s) | 477, 560, 659 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 663 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 663 |
| EaeI | YGGCCR | 1 cut(s) | 763 |
| Eam1104I | CTCTTC | 1 cut(s) | 718 |
| EarI | CTCTTC | 1 cut(s) | 718 |
| Ecl136II | GAGCTC | 1 cut(s) | 496 |
| Eco24I | GRGCYC | 1 cut(s) | 498 |
| Eco53kI | GAGCTC | 1 cut(s) | 496 |
| Eco91I | GGTNACC | 1 cut(s) | 692 |
| EcoICRI | GAGCTC | 1 cut(s) | 496 |
| EcoO65I | GGTNACC | 1 cut(s) | 692 |
| EcoRII | CCWGG | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 1 cut(s) | 498 |
| EgeI | GGCGCC | 2 cut(s) | 620, 778 |
| EheI | GGCGCC | 2 cut(s) | 620, 778 |
| Esp3I | CGTCTC | 1 cut(s) | 430 |
| FaeI | CATG | 3 cut(s) | 494, 530, 770 |
| FaqI | GGGAC | 1 cut(s) | 233 |
| FatI | CATG | 3 cut(s) | 490, 526, 766 |
| FauNDI | CATATG | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 1 cut(s) | 114 |
| FokI | GGATG | 4 cut(s) | 131, 179, 226, 521 |
| FriOI | GRGCYC | 1 cut(s) | 498 |
| Fsp4HI | GCNGC | 1 cut(s) | 114 |
| FspBI | CTAG | 2 cut(s) | 663, 743 |
| GlaI | GCGC | 3 cut(s) | 620, 778, 819 |
| GluI | GCNGC | 1 cut(s) | 114 |
| GsuI | CTGGAG | 1 cut(s) | 161 |
| HaeII | RGCGCY | 3 cut(s) | 622, 780, 821 |
| HaeIII | GGCC | 1 cut(s) | 765 |
| HgaI | GACGC | 1 cut(s) | 815 |
| HhaI | GCGC | 3 cut(s) | 621, 779, 820 |
| Hin1I | GRCGYC | 2 cut(s) | 619, 777 |
| Hin1II | CATG | 3 cut(s) | 494, 530, 770 |
| Hin6I | GCGC | 3 cut(s) | 619, 777, 818 |
| HinP1I | GCGC | 3 cut(s) | 619, 777, 818 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 6 cut(s) | 154, 170, 221, 254, 406, 456 |
| Hpy166II | GTNNAC | 1 cut(s) | 731 |
| Hpy188I | TCNGA | 2 cut(s) | 334, 585 |
| Hpy188III | TCNNGA | 5 cut(s) | 266, 320, 491, 558, 654 |
| Hpy8I | GTNNAC | 1 cut(s) | 731 |
| HpyAV | CCTTC | 4 cut(s) | 204, 427, 609, 683 |
| HpyCH4IV | ACGT | 2 cut(s) | 246, 733 |
| HpyCH4V | TGCA | 3 cut(s) | 345, 431, 470 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 101, 110, 122, 131, 815 |
| HpyF3I | CTNAG | 6 cut(s) | 118, 271, 444, 609, 641, 789 |
| HpySE526I | ACGT | 2 cut(s) | 246, 733 |
| Hsp92I | GRCGYC | 2 cut(s) | 619, 777 |
| Hsp92II | CATG | 3 cut(s) | 494, 530, 770 |
| HspAI | GCGC | 3 cut(s) | 619, 777, 818 |
| KasI | GGCGCC | 2 cut(s) | 618, 776 |
| Kzo9I | GATC | 3 cut(s) | 477, 560, 659 |
| LmnI | GCTCC | 3 cut(s) | 34, 180, 503 |
| Lsp1109I | GCAGC | 1 cut(s) | 125 |
| LweI | GCATC | 1 cut(s) | 376 |
| MaeI | CTAG | 2 cut(s) | 663, 743 |
| MaeII | ACGT | 2 cut(s) | 246, 733 |
| MaeIII | GTNAC | 4 cut(s) | 5, 251, 379, 692 |
| MalI | GATC | 3 cut(s) | 479, 562, 661 |
| MboI | GATC | 3 cut(s) | 477, 560, 659 |
| MboII | GAAGA | 5 cut(s) | 209, 212, 415, 556, 735 |
| MflI | RGATCY | 1 cut(s) | 560 |
| MhlI | GDGCHC | 1 cut(s) | 498 |
| MlsI | TGGCCA | 1 cut(s) | 765 |
| MluCI | AATT | 5 cut(s) | 17, 75, 362, 553, 592 |
| MluNI | TGGCCA | 1 cut(s) | 765 |
| Mly113I | GGCGCC | 2 cut(s) | 619, 777 |
| MlyI | GAGTC | 4 cut(s) | 148, 215, 248, 400 |
| MnlI | CCTC | 7 cut(s) | 115, 302, 370, 719, 739, 743, 769 |
| Mox20I | TGGCCA | 1 cut(s) | 765 |
| MscI | TGGCCA | 1 cut(s) | 765 |
| MseI | TTAA | 2 cut(s) | 348, 356 |
| MslI | CAYNNNNRTG | 5 cut(s) | 149, 165, 539, 771, 801 |
| Msp20I | TGGCCA | 1 cut(s) | 765 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 101, 110, 122, 131, 815 |
| NarI | GGCGCC | 2 cut(s) | 619, 777 |
| NdeI | CATATG | 1 cut(s) | 162 |
| NdeII | GATC | 3 cut(s) | 477, 560, 659 |
| NlaIII | CATG | 3 cut(s) | 494, 530, 770 |
| NlaIV | GGNNCC | 3 cut(s) | 620, 719, 778 |
| NmuCI | GTSAC | 2 cut(s) | 251, 379 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PfeI | GAWTC | 2 cut(s) | 170, 456 |
| PkrI | GCNGC | 1 cut(s) | 115 |
| PleI | GAGTC | 4 cut(s) | 148, 215, 248, 400 |
| PluTI | GGCGCC | 2 cut(s) | 622, 780 |
| PpsI | GAGTC | 4 cut(s) | 148, 215, 248, 400 |
| Psp124BI | GAGCTC | 1 cut(s) | 498 |
| Psp6I | CCWGG | 1 cut(s) | 63 |
| PspEI | GGTNACC | 1 cut(s) | 692 |
| PspGI | CCWGG | 1 cut(s) | 63 |
| PspN4I | GGNNCC | 3 cut(s) | 620, 719, 778 |
| PsuI | RGATCY | 1 cut(s) | 560 |
| RsaI | GTAC | 1 cut(s) | 182 |
| RsaNI | GTAC | 1 cut(s) | 181 |
| RseI | CAYNNNNRTG | 5 cut(s) | 149, 165, 539, 771, 801 |
| SacI | GAGCTC | 1 cut(s) | 498 |
| SaqAI | TTAA | 2 cut(s) | 348, 356 |
| SatI | GCNGC | 1 cut(s) | 114 |
| Sau3AI | GATC | 3 cut(s) | 477, 560, 659 |
| SchI | GAGTC | 4 cut(s) | 148, 215, 248, 400 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 1 cut(s) | 498 |
| SfaNI | GCATC | 1 cut(s) | 376 |
| SfoI | GGCGCC | 2 cut(s) | 620, 778 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 149, 165, 539, 771, 801 |
| SmlI | CTYRAG | 1 cut(s) | 90 |
| SmoI | CTYRAG | 1 cut(s) | 90 |
| Sse9I | AATT | 5 cut(s) | 17, 75, 362, 553, 592 |
| SsiI | CCGC | 1 cut(s) | 295 |
| SspDI | GGCGCC | 2 cut(s) | 618, 776 |
| SspMI | CTAG | 2 cut(s) | 663, 743 |
| SstI | GAGCTC | 1 cut(s) | 498 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| TaiI | ACGT | 2 cut(s) | 249, 736 |
| TaqI | TCGA | 3 cut(s) | 228, 454, 557 |
| TasI | AATT | 5 cut(s) | 17, 75, 362, 553, 592 |
| TfiI | GAWTC | 2 cut(s) | 170, 456 |
| Tru1I | TTAA | 2 cut(s) | 348, 356 |
| Tru9I | TTAA | 2 cut(s) | 348, 356 |
| TseFI | GTSAC | 2 cut(s) | 251, 379 |
| TseI | GCWGC | 1 cut(s) | 113 |
| Tsp45I | GTSAC | 2 cut(s) | 251, 379 |
| TspDTI | ATGAA | 4 cut(s) | 206, 210, 479, 524 |
| TspGWI | ACGGA | 4 cut(s) | 239, 490, 553, 730 |
| XapI | RAATTY | 1 cut(s) | 362 |
| XspI | CTAG | 2 cut(s) | 663, 743 |