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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 1068, 1080 |
| Acc36I | ACCTGC | 1 cut(s) | 842 |
| AccB1I | GGYRCC | 1 cut(s) | 623 |
| AccI | GTMKAC | 1 cut(s) | 712 |
| AciI | CCGC | 4 cut(s) | 439, 627, 723, 805 |
| AcsI | RAATTY | 2 cut(s) | 10, 506 |
| AcyI | GRCGYC | 1 cut(s) | 960 |
| AfaI | GTAC | 2 cut(s) | 736, 1020 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 824, 887 |
| AgsI | TTSAA | 3 cut(s) | 236, 454, 914 |
| AhlI | ACTAGT | 1 cut(s) | 1013 |
| AjiI | CACGTC | 2 cut(s) | 214, 1029 |
| AjnI | CCWGG | 1 cut(s) | 207 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 366, 398 |
| AluBI | AGCT | 4 cut(s) | 239, 646, 751, 997 |
| AluI | AGCT | 4 cut(s) | 239, 646, 751, 997 |
| Alw21I | GWGCWC | 1 cut(s) | 999 |
| Alw26I | GTCTC | 6 cut(s) | 170, 370, 574, 782, 863, 1019 |
| AoxI | GGCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 1 cut(s) | 257 |
| ApoI | RAATTY | 2 cut(s) | 10, 506 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 483, 978 |
| AspLEI | GCGC | 2 cut(s) | 1069, 1081 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| BaeGI | GKGCMC | 1 cut(s) | 626 |
| BanI | GGYRCC | 1 cut(s) | 623 |
| BanII | GRGCYC | 1 cut(s) | 999 |
| BbsI | GAAGAC | 3 cut(s) | 351, 554, 868 |
| Bbv12I | GWGCWC | 1 cut(s) | 999 |
| BbvI | GCAGC | 1 cut(s) | 269 |
| BccI | CCATC | 9 cut(s) | 170, 293, 420, 574, 641, 648, 678, 699, 1052 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 593, 627 |
| BciT130I | CCWGG | 1 cut(s) | 209 |
| BcoDI | GTCTC | 6 cut(s) | 170, 370, 574, 782, 863, 1019 |
| BcuI | ACTAGT | 1 cut(s) | 1013 |
| BfaI | CTAG | 5 cut(s) | 204, 416, 752, 843, 1014 |
| BfuAI | ACCTGC | 1 cut(s) | 842 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BglII | AGATCT | 1 cut(s) | 829 |
| BisI | GCNGC | 1 cut(s) | 258 |
| BlsI | GCNGC | 1 cut(s) | 259 |
| Bme1390I | CCNGG | 1 cut(s) | 209 |
| BmgBI | CACGTC | 2 cut(s) | 214, 1029 |
| BmiI | GGNNCC | 2 cut(s) | 201, 625 |
| BmrFI | CCNGG | 1 cut(s) | 209 |
| BmsI | GCATC | 1 cut(s) | 520 |
| BpiI | GAAGAC | 3 cut(s) | 351, 554, 868 |
| BpmI | CTGGAG | 2 cut(s) | 218, 305 |
| Bpu10I | CCTNAGC | 1 cut(s) | 647 |
| BpuEI | CTTGAG | 1 cut(s) | 152 |
| Bsa29I | ATCGAT | 1 cut(s) | 603 |
| BsaHI | GRCGYC | 1 cut(s) | 960 |
| BsaI | GGTCTC | 1 cut(s) | 370 |
| BsaJI | CCNNGG | 1 cut(s) | 678 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 824, 887 |
| Bse1I | ACTGG | 3 cut(s) | 127, 322, 763 |
| BseBI | CCWGG | 1 cut(s) | 209 |
| BseCI | ATCGAT | 1 cut(s) | 603 |
| BseDI | CCNNGG | 1 cut(s) | 678 |
| BseGI | GGATG | 4 cut(s) | 84, 288, 316, 633 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 824, 887 |
| BseNI | ACTGG | 3 cut(s) | 127, 322, 763 |
| BseRI | GAGGAG | 1 cut(s) | 906 |
| BseSI | GKGCMC | 1 cut(s) | 626 |
| BseXI | GCAGC | 1 cut(s) | 269 |
| BshFI | GGCC | 1 cut(s) | 173 |
| BshNI | GGYRCC | 1 cut(s) | 623 |
| BshVI | ATCGAT | 1 cut(s) | 603 |
| BsiHKAI | GWGCWC | 1 cut(s) | 999 |
| BslFI | GGGAC | 1 cut(s) | 971 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 824, 887 |
| BsmAI | GTCTC | 6 cut(s) | 170, 370, 574, 782, 863, 1019 |
| BsmBI | CGTCTC | 3 cut(s) | 170, 574, 1019 |
| BsmFI | GGGAC | 1 cut(s) | 971 |
| BsnI | GGCC | 1 cut(s) | 173 |
| Bso31I | GGTCTC | 1 cut(s) | 370 |
| Bsp1286I | GDGCHC | 2 cut(s) | 626, 999 |
| Bsp1407I | TGTACA | 1 cut(s) | 1018 |
| Bsp143I | GATC | 1 cut(s) | 829 |
| Bsp19I | CCATGG | 1 cut(s) | 678 |
| BspACI | CCGC | 4 cut(s) | 439, 627, 723, 805 |
| BspANI | GGCC | 1 cut(s) | 173 |
| BspDI | ATCGAT | 1 cut(s) | 603 |
| BspLI | GGNNCC | 2 cut(s) | 201, 625 |
| BspMI | ACCTGC | 1 cut(s) | 842 |
| BspT107I | GGYRCC | 1 cut(s) | 623 |
| BspTNI | GGTCTC | 1 cut(s) | 370 |
| BsrGI | TGTACA | 1 cut(s) | 1018 |
| BsrI | ACTGG | 3 cut(s) | 127, 322, 763 |
| BssECI | CCNNGG | 1 cut(s) | 678 |
| BssMI | GATC | 1 cut(s) | 829 |
| BssNI | GRCGYC | 1 cut(s) | 960 |
| BssT1I | CCWWGG | 1 cut(s) | 678 |
| Bst2UI | CCWGG | 1 cut(s) | 209 |
| Bst4CI | ACNGT | 3 cut(s) | 223, 874, 951 |
| BstACI | GRCGYC | 1 cut(s) | 960 |
| BstAUI | TGTACA | 1 cut(s) | 1018 |
| BstDEI | CTNAG | 5 cut(s) | 5, 262, 588, 647, 984 |
| BstDSI | CCRYGG | 1 cut(s) | 678 |
| BstEII | GGTNACC | 1 cut(s) | 945 |
| BstF5I | GGATG | 4 cut(s) | 84, 288, 316, 633 |
| BstHHI | GCGC | 2 cut(s) | 1069, 1081 |
| BstKTI | GATC | 1 cut(s) | 832 |
| BstMAI | GTCTC | 6 cut(s) | 170, 370, 574, 782, 863, 1019 |
| BstMBI | GATC | 1 cut(s) | 829 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 39, 245, 254, 266, 848 |
| BstNI | CCWGG | 1 cut(s) | 209 |
| BstPI | GGTNACC | 1 cut(s) | 945 |
| BstSCI | CCNGG | 1 cut(s) | 207 |
| BstSLI | GKGCMC | 1 cut(s) | 626 |
| BstV1I | GCAGC | 1 cut(s) | 269 |
| BstV2I | GAAGAC | 3 cut(s) | 351, 554, 868 |
| BstX2I | RGATCY | 1 cut(s) | 829 |
| BstYI | RGATCY | 1 cut(s) | 829 |
| Bsu15I | ATCGAT | 1 cut(s) | 603 |
| BsuRI | GGCC | 1 cut(s) | 173 |
| BsuTUI | ATCGAT | 1 cut(s) | 603 |
| BtgI | CCRYGG | 1 cut(s) | 678 |
| BtgZI | GCGATG | 1 cut(s) | 548 |
| BtrI | CACGTC | 2 cut(s) | 214, 1029 |
| BtsCI | GGATG | 4 cut(s) | 84, 288, 316, 633 |
| BveI | ACCTGC | 1 cut(s) | 842 |
| CfoI | GCGC | 2 cut(s) | 1069, 1081 |
| ClaI | ATCGAT | 1 cut(s) | 603 |
| CseI | GACGC | 2 cut(s) | 152, 968 |
| Csp6I | GTAC | 2 cut(s) | 735, 1019 |
| CviAII | CATG | 5 cut(s) | 679, 695, 926, 1022, 1082 |
| CviQI | GTAC | 2 cut(s) | 735, 1019 |
| DdeI | CTNAG | 5 cut(s) | 5, 262, 588, 647, 984 |
| DpnI | GATC | 1 cut(s) | 831 |
| DpnII | GATC | 1 cut(s) | 829 |
| EciI | GGCGGA | 1 cut(s) | 794 |
| Ecl136II | GAGCTC | 1 cut(s) | 997 |
| Eco130I | CCWWGG | 1 cut(s) | 678 |
| Eco24I | GRGCYC | 1 cut(s) | 999 |
| Eco31I | GGTCTC | 1 cut(s) | 370 |
| Eco32I | GATATC | 2 cut(s) | 154, 1105 |
| Eco53kI | GAGCTC | 1 cut(s) | 997 |
| Eco91I | GGTNACC | 1 cut(s) | 945 |
| EcoICRI | GAGCTC | 1 cut(s) | 997 |
| EcoO65I | GGTNACC | 1 cut(s) | 945 |
| EcoRI | GAATTC | 1 cut(s) | 506 |
| EcoRII | CCWGG | 1 cut(s) | 207 |
| EcoRV | GATATC | 2 cut(s) | 154, 1105 |
| EcoT14I | CCWWGG | 1 cut(s) | 678 |
| EcoT38I | GRGCYC | 1 cut(s) | 999 |
| ErhI | CCWWGG | 1 cut(s) | 678 |
| Esp3I | CGTCTC | 3 cut(s) | 170, 574, 1019 |
| FaeI | CATG | 5 cut(s) | 682, 698, 929, 1025, 1085 |
| FaqI | GGGAC | 1 cut(s) | 971 |
| FatI | CATG | 5 cut(s) | 678, 694, 925, 1021, 1081 |
| FauNDI | CATATG | 2 cut(s) | 17, 306 |
| FblI | GTMKAC | 1 cut(s) | 712 |
| Fnu4HI | GCNGC | 1 cut(s) | 258 |
| FokI | GGATG | 4 cut(s) | 91, 275, 323, 620 |
| FriOI | GRGCYC | 1 cut(s) | 999 |
| Fsp4HI | GCNGC | 1 cut(s) | 258 |
| FspBI | CTAG | 5 cut(s) | 204, 416, 752, 843, 1014 |
| FspI | TGCGCA | 2 cut(s) | 1068, 1080 |
| GlaI | GCGC | 2 cut(s) | 1068, 1080 |
| GluI | GCNGC | 1 cut(s) | 258 |
| GsuI | CTGGAG | 2 cut(s) | 218, 305 |
| HaeIII | GGCC | 1 cut(s) | 173 |
| HgaI | GACGC | 2 cut(s) | 152, 968 |
| HhaI | GCGC | 2 cut(s) | 1069, 1081 |
| Hin1I | GRCGYC | 1 cut(s) | 960 |
| Hin1II | CATG | 5 cut(s) | 682, 698, 929, 1025, 1085 |
| Hin6I | GCGC | 2 cut(s) | 1067, 1079 |
| HinP1I | GCGC | 2 cut(s) | 1067, 1079 |
| HindIII | AAGCTT | 1 cut(s) | 237 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy166II | GTNNAC | 2 cut(s) | 713, 1019 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 90, 130, 478, 973, 1099 |
| Hpy188III | TCNNGA | 5 cut(s) | 149, 197, 410, 454, 464 |
| Hpy8I | GTNNAC | 2 cut(s) | 713, 1019 |
| Hpy99I | CGWCG | 1 cut(s) | 886 |
| HpyAV | CCTTC | 2 cut(s) | 348, 571 |
| HpyCH4III | ACNGT | 3 cut(s) | 223, 874, 951 |
| HpyCH4IV | ACGT | 4 cut(s) | 213, 390, 777, 1028 |
| HpyCH4V | TGCA | 4 cut(s) | 575, 614, 823, 851 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 39, 245, 254, 266, 848 |
| HpyF3I | CTNAG | 5 cut(s) | 5, 262, 588, 647, 984 |
| HpySE526I | ACGT | 4 cut(s) | 213, 390, 777, 1028 |
| Hsp92I | GRCGYC | 1 cut(s) | 960 |
| Hsp92II | CATG | 5 cut(s) | 682, 698, 929, 1025, 1085 |
| HspAI | GCGC | 2 cut(s) | 1067, 1079 |
| Kzo9I | GATC | 1 cut(s) | 829 |
| LmnI | GCTCC | 5 cut(s) | 47, 112, 199, 324, 1121 |
| Lsp1109I | GCAGC | 1 cut(s) | 269 |
| LweI | GCATC | 1 cut(s) | 520 |
| MaeI | CTAG | 5 cut(s) | 204, 416, 752, 843, 1014 |
| MaeII | ACGT | 4 cut(s) | 213, 390, 777, 1028 |
| MaeIII | GTNAC | 5 cut(s) | 395, 744, 754, 857, 945 |
| MalI | GATC | 1 cut(s) | 831 |
| MboI | GATC | 1 cut(s) | 829 |
| MboII | GAAGA | 5 cut(s) | 353, 356, 386, 559, 868 |
| MflI | RGATCY | 1 cut(s) | 829 |
| MhlI | GDGCHC | 2 cut(s) | 626, 999 |
| MluCI | AATT | 7 cut(s) | 10, 58, 95, 419, 506, 705, 1050 |
| MlyI | GAGTC | 6 cut(s) | 292, 392, 544, 696, 784, 1103 |
| MmeI | TCCRAC | 2 cut(s) | 760, 818 |
| MnlI | CCTC | 6 cut(s) | 259, 446, 640, 884, 973, 1078 |
| MroXI | GAANNNNTTC | 2 cut(s) | 483, 978 |
| MseI | TTAA | 3 cut(s) | 492, 500, 812 |
| MslI | CAYNNNNRTG | 3 cut(s) | 293, 309, 864 |
| MspR9I | CCNGG | 1 cut(s) | 209 |
| MvaI | CCWGG | 1 cut(s) | 209 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 39, 245, 254, 266, 848 |
| NcoI | CCATGG | 1 cut(s) | 678 |
| NdeI | CATATG | 2 cut(s) | 17, 306 |
| NdeII | GATC | 1 cut(s) | 829 |
| NlaIII | CATG | 5 cut(s) | 682, 698, 929, 1025, 1085 |
| NlaIV | GGNNCC | 2 cut(s) | 201, 625 |
| NmuCI | GTSAC | 3 cut(s) | 395, 754, 857 |
| NsbI | TGCGCA | 2 cut(s) | 1068, 1080 |
| PdmI | GAANNNNTTC | 2 cut(s) | 483, 978 |
| PfeI | GAWTC | 4 cut(s) | 180, 193, 314, 600 |
| PkrI | GCNGC | 1 cut(s) | 259 |
| PleI | GAGTC | 6 cut(s) | 292, 392, 544, 695, 784, 1102 |
| PpsI | GAGTC | 6 cut(s) | 292, 392, 544, 695, 784, 1102 |
| Psp124BI | GAGCTC | 1 cut(s) | 999 |
| Psp6I | CCWGG | 1 cut(s) | 207 |
| PspEI | GGTNACC | 1 cut(s) | 945 |
| PspGI | CCWGG | 1 cut(s) | 207 |
| PspN4I | GGNNCC | 2 cut(s) | 201, 625 |
| PsuI | RGATCY | 1 cut(s) | 829 |
| RsaI | GTAC | 2 cut(s) | 736, 1020 |
| RsaNI | GTAC | 2 cut(s) | 735, 1019 |
| RseI | CAYNNNNRTG | 3 cut(s) | 293, 309, 864 |
| SacI | GAGCTC | 1 cut(s) | 999 |
| SaqAI | TTAA | 3 cut(s) | 492, 500, 812 |
| SatI | GCNGC | 1 cut(s) | 258 |
| Sau3AI | GATC | 1 cut(s) | 829 |
| SchI | GAGTC | 6 cut(s) | 292, 392, 544, 696, 784, 1103 |
| ScrFI | CCNGG | 1 cut(s) | 209 |
| SduI | GDGCHC | 2 cut(s) | 626, 999 |
| SfaNI | GCATC | 1 cut(s) | 520 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 293, 309, 864 |
| SmlI | CTYRAG | 1 cut(s) | 167 |
| SmoI | CTYRAG | 1 cut(s) | 167 |
| SpeI | ACTAGT | 1 cut(s) | 1013 |
| Sse9I | AATT | 7 cut(s) | 10, 58, 95, 419, 506, 705, 1050 |
| SsiI | CCGC | 4 cut(s) | 439, 627, 723, 805 |
| SspMI | CTAG | 5 cut(s) | 204, 416, 752, 843, 1014 |
| SstI | GAGCTC | 1 cut(s) | 999 |
| StyD4I | CCNGG | 1 cut(s) | 207 |
| StyI | CCWWGG | 1 cut(s) | 678 |
| TaaI | ACNGT | 3 cut(s) | 223, 874, 951 |
| TaiI | ACGT | 4 cut(s) | 216, 393, 780, 1031 |
| TaqI | TCGA | 4 cut(s) | 372, 598, 603, 1107 |
| TasI | AATT | 7 cut(s) | 10, 58, 95, 419, 506, 705, 1050 |
| TatI | WGTACW | 2 cut(s) | 734, 1018 |
| TfiI | GAWTC | 4 cut(s) | 180, 193, 314, 600 |
| Tru1I | TTAA | 3 cut(s) | 492, 500, 812 |
| Tru9I | TTAA | 3 cut(s) | 492, 500, 812 |
| TseFI | GTSAC | 3 cut(s) | 395, 754, 857 |
| TseI | GCWGC | 1 cut(s) | 257 |
| Tsp45I | GTSAC | 3 cut(s) | 395, 754, 857 |
| TspDTI | ATGAA | 4 cut(s) | 4, 350, 354, 1017 |
| TspGWI | ACGGA | 1 cut(s) | 1108 |
| XapI | RAATTY | 2 cut(s) | 10, 506 |
| XmiI | GTMKAC | 1 cut(s) | 712 |
| XmnI | GAANNNNTTC | 2 cut(s) | 483, 978 |
| XspI | CTAG | 5 cut(s) | 204, 416, 752, 843, 1014 |