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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 10 |
| AfaI | GTAC | 1 cut(s) | 334 |
| AjiI | CACGTC | 1 cut(s) | 214 |
| AjnI | CCWGG | 3 cut(s) | 74, 183, 207 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 366, 398 |
| AluBI | AGCT | 1 cut(s) | 233 |
| AluI | AGCT | 1 cut(s) | 233 |
| Alw26I | GTCTC | 1 cut(s) | 370 |
| Ama87I | CYCGRG | 1 cut(s) | 197 |
| AoxI | GGCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 1 cut(s) | 257 |
| ApoI | RAATTY | 1 cut(s) | 10 |
| AvaI | CYCGRG | 1 cut(s) | 197 |
| BbsI | GAAGAC | 1 cut(s) | 351 |
| BbvI | GCAGC | 1 cut(s) | 269 |
| BccI | CCATC | 2 cut(s) | 135, 293 |
| BciT130I | CCWGG | 3 cut(s) | 76, 185, 209 |
| BciVI | GTATCC | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 370 |
| BfaI | CTAG | 3 cut(s) | 204, 351, 416 |
| BfuI | GTATCC | 1 cut(s) | 181 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BisI | GCNGC | 1 cut(s) | 258 |
| BlsI | GCNGC | 1 cut(s) | 259 |
| Bme1390I | CCNGG | 3 cut(s) | 76, 185, 209 |
| BmeT110I | CYCGRG | 1 cut(s) | 197 |
| BmgBI | CACGTC | 1 cut(s) | 214 |
| BmrFI | CCNGG | 3 cut(s) | 76, 185, 209 |
| BmsI | GCATC | 1 cut(s) | 172 |
| BpiI | GAAGAC | 1 cut(s) | 351 |
| Bpu10I | CCTNAGC | 1 cut(s) | 5 |
| BpuEI | CTTGAG | 1 cut(s) | 152 |
| BsaI | GGTCTC | 1 cut(s) | 370 |
| Bse1I | ACTGG | 1 cut(s) | 127 |
| BseBI | CCWGG | 3 cut(s) | 76, 185, 209 |
| BseGI | GGATG | 2 cut(s) | 288, 316 |
| BseMII | CTCAG | 1 cut(s) | 19 |
| BseNI | ACTGG | 1 cut(s) | 127 |
| BseXI | GCAGC | 1 cut(s) | 269 |
| BshFI | GGCC | 1 cut(s) | 173 |
| BsiHKCI | CYCGRG | 1 cut(s) | 197 |
| BsmAI | GTCTC | 1 cut(s) | 370 |
| BsnI | GGCC | 1 cut(s) | 173 |
| Bso31I | GGTCTC | 1 cut(s) | 370 |
| BsoBI | CYCGRG | 1 cut(s) | 197 |
| BspANI | GGCC | 1 cut(s) | 173 |
| BspCNI | CTCAG | 1 cut(s) | 18 |
| BspHI | TCATGA | 1 cut(s) | 148 |
| BspTNI | GGTCTC | 1 cut(s) | 370 |
| BsrI | ACTGG | 1 cut(s) | 127 |
| Bst2UI | CCWGG | 3 cut(s) | 76, 185, 209 |
| Bst4CI | ACNGT | 1 cut(s) | 223 |
| Bst6I | CTCTTC | 1 cut(s) | 76 |
| BstC8I | GCNNGC | 2 cut(s) | 161, 231 |
| BstDEI | CTNAG | 2 cut(s) | 5, 262 |
| BstF5I | GGATG | 2 cut(s) | 288, 316 |
| BstMAI | GTCTC | 1 cut(s) | 370 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 39, 266, 275 |
| BstNI | CCWGG | 3 cut(s) | 76, 185, 209 |
| BstSCI | CCNGG | 3 cut(s) | 74, 183, 207 |
| BstV1I | GCAGC | 1 cut(s) | 269 |
| BstV2I | GAAGAC | 1 cut(s) | 351 |
| BsuI | GTATCC | 1 cut(s) | 181 |
| BsuRI | GGCC | 1 cut(s) | 173 |
| BtrI | CACGTC | 1 cut(s) | 214 |
| BtsCI | GGATG | 2 cut(s) | 288, 316 |
| Cac8I | GCNNGC | 2 cut(s) | 161, 231 |
| CciI | TCATGA | 1 cut(s) | 148 |
| Csp6I | GTAC | 1 cut(s) | 333 |
| CviAII | CATG | 1 cut(s) | 149 |
| CviJI | RGCY | 9 cut(s) | 33, 126, 173, 202, 207, 233, 260, 284, 358 |
| CviKI_1 | RGCY | 9 cut(s) | 33, 126, 173, 202, 207, 233, 260, 284, 358 |
| CviQI | GTAC | 1 cut(s) | 333 |
| DdeI | CTNAG | 2 cut(s) | 5, 262 |
| Eam1104I | CTCTTC | 1 cut(s) | 76 |
| EarI | CTCTTC | 1 cut(s) | 76 |
| Eco31I | GGTCTC | 1 cut(s) | 370 |
| Eco32I | GATATC | 1 cut(s) | 134 |
| Eco88I | CYCGRG | 1 cut(s) | 197 |
| EcoRII | CCWGG | 3 cut(s) | 74, 183, 207 |
| EcoRV | GATATC | 1 cut(s) | 134 |
| FaeI | CATG | 1 cut(s) | 152 |
| FaiI | YATR | 5 cut(s) | 17, 19, 150, 306, 308 |
| FatI | CATG | 1 cut(s) | 148 |
| FauNDI | CATATG | 1 cut(s) | 306 |
| Fnu4HI | GCNGC | 1 cut(s) | 258 |
| FokI | GGATG | 2 cut(s) | 275, 323 |
| Fsp4HI | GCNGC | 1 cut(s) | 258 |
| FspBI | CTAG | 3 cut(s) | 204, 351, 416 |
| GluI | GCNGC | 1 cut(s) | 258 |
| HaeIII | GGCC | 1 cut(s) | 173 |
| Hin1II | CATG | 1 cut(s) | 152 |
| HinfI | GANTC | 4 cut(s) | 193, 298, 314, 398 |
| Hpy166II | GTNNAC | 1 cut(s) | 333 |
| Hpy188I | TCNGA | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 5 cut(s) | 7, 129, 149, 197, 410 |
| Hpy8I | GTNNAC | 1 cut(s) | 333 |
| HpyAV | CCTTC | 1 cut(s) | 348 |
| HpyCH4III | ACNGT | 1 cut(s) | 223 |
| HpyCH4IV | ACGT | 2 cut(s) | 213, 390 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 39, 266, 275 |
| HpyF3I | CTNAG | 2 cut(s) | 5, 262 |
| HpySE526I | ACGT | 2 cut(s) | 213, 390 |
| Hsp92II | CATG | 1 cut(s) | 152 |
| LmnI | GCTCC | 1 cut(s) | 112 |
| Lsp1109I | GCAGC | 1 cut(s) | 269 |
| LweI | GCATC | 1 cut(s) | 172 |
| MaeI | CTAG | 3 cut(s) | 204, 351, 416 |
| MaeII | ACGT | 2 cut(s) | 213, 390 |
| MaeIII | GTNAC | 2 cut(s) | 83, 395 |
| MboII | GAAGA | 5 cut(s) | 63, 257, 353, 356, 386 |
| MluCI | AATT | 2 cut(s) | 10, 95 |
| MlyI | GAGTC | 2 cut(s) | 292, 392 |
| MnlI | CCTC | 1 cut(s) | 259 |
| MslI | CAYNNNNRTG | 2 cut(s) | 293, 309 |
| MspR9I | CCNGG | 3 cut(s) | 76, 185, 209 |
| MvaI | CCWGG | 3 cut(s) | 76, 185, 209 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 39, 266, 275 |
| NdeI | CATATG | 1 cut(s) | 306 |
| NlaIII | CATG | 1 cut(s) | 152 |
| NmuCI | GTSAC | 1 cut(s) | 395 |
| PaeR7I | CTCGAG | 1 cut(s) | 197 |
| PagI | TCATGA | 1 cut(s) | 148 |
| PfeI | GAWTC | 2 cut(s) | 193, 314 |
| PfoI | TCCNGGA | 2 cut(s) | 74, 183 |
| PkrI | GCNGC | 1 cut(s) | 259 |
| PleI | GAGTC | 2 cut(s) | 292, 392 |
| PpsI | GAGTC | 2 cut(s) | 292, 392 |
| Psp6I | CCWGG | 3 cut(s) | 74, 183, 207 |
| PspGI | CCWGG | 3 cut(s) | 74, 183, 207 |
| RsaI | GTAC | 1 cut(s) | 334 |
| RsaNI | GTAC | 1 cut(s) | 333 |
| RseI | CAYNNNNRTG | 2 cut(s) | 293, 309 |
| SatI | GCNGC | 1 cut(s) | 258 |
| SchI | GAGTC | 2 cut(s) | 292, 392 |
| ScrFI | CCNGG | 3 cut(s) | 76, 185, 209 |
| SetI | ASST | 5 cut(s) | 90, 216, 235, 393, 417 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| Sfr274I | CTCGAG | 1 cut(s) | 197 |
| SlaI | CTCGAG | 1 cut(s) | 197 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 293, 309 |
| SmlI | CTYRAG | 2 cut(s) | 167, 197 |
| SmoI | CTYRAG | 2 cut(s) | 167, 197 |
| Sse9I | AATT | 2 cut(s) | 10, 95 |
| SspMI | CTAG | 3 cut(s) | 204, 351, 416 |
| StyD4I | CCNGG | 3 cut(s) | 74, 183, 207 |
| TaaI | ACNGT | 1 cut(s) | 223 |
| TaiI | ACGT | 2 cut(s) | 216, 393 |
| TaqI | TCGA | 2 cut(s) | 198, 372 |
| TasI | AATT | 2 cut(s) | 10, 95 |
| TfiI | GAWTC | 2 cut(s) | 193, 314 |
| TseFI | GTSAC | 1 cut(s) | 395 |
| TseI | GCWGC | 1 cut(s) | 257 |
| Tsp45I | GTSAC | 1 cut(s) | 395 |
| TspDTI | ATGAA | 3 cut(s) | 137, 192, 354 |
| TspGWI | ACGGA | 1 cut(s) | 383 |
| XapI | RAATTY | 1 cut(s) | 10 |
| XhoI | CTCGAG | 1 cut(s) | 197 |
| XspI | CTAG | 3 cut(s) | 204, 351, 416 |