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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 945 |
| AccB1I | GGYRCC | 2 cut(s) | 521, 785 |
| AccI | GTMKAC | 1 cut(s) | 1083 |
| AccIII | TCCGGA | 1 cut(s) | 865 |
| AciI | CCGC | 1 cut(s) | 313 |
| AclWI | GGATC | 7 cut(s) | 78, 82, 95, 145, 157, 158, 1158 |
| AcsI | RAATTY | 2 cut(s) | 380, 644 |
| AfaI | GTAC | 4 cut(s) | 160, 336, 600, 1179 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 112, 967 |
| AflII | CTTAAG | 2 cut(s) | 74, 137 |
| AflIII | ACRYGT | 1 cut(s) | 1015 |
| AgsI | TTSAA | 3 cut(s) | 328, 592, 892 |
| AjiI | CACGTC | 1 cut(s) | 184 |
| AjnI | CCWGG | 1 cut(s) | 66 |
| AluBI | AGCT | 5 cut(s) | 9, 203, 514, 778, 800 |
| AluI | AGCT | 5 cut(s) | 9, 203, 514, 778, 800 |
| Alw21I | GWGCWC | 1 cut(s) | 997 |
| Alw26I | GTCTC | 3 cut(s) | 17, 448, 712 |
| Alw44I | GTGCAC | 1 cut(s) | 993 |
| AlwI | GGATC | 7 cut(s) | 78, 82, 95, 145, 157, 158, 1158 |
| Ama87I | CYCGRG | 1 cut(s) | 245 |
| Aor13HI | TCCGGA | 1 cut(s) | 865 |
| AoxI | GGCC | 1 cut(s) | 1035 |
| ApaLI | GTGCAC | 1 cut(s) | 993 |
| ApeKI | GCWGC | 1 cut(s) | 250 |
| ApoI | RAATTY | 2 cut(s) | 380, 644 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 854, 886 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 357, 621 |
| AspLEI | GCGC | 4 cut(s) | 35, 66, 98, 129 |
| AspS9I | GGNCC | 3 cut(s) | 52, 115, 947 |
| AvaI | CYCGRG | 1 cut(s) | 245 |
| AvaII | GGWCC | 3 cut(s) | 52, 115, 947 |
| BaeGI | GKGCMC | 1 cut(s) | 997 |
| BamHI | GGATCC | 2 cut(s) | 87, 150 |
| BanI | GGYRCC | 2 cut(s) | 521, 785 |
| BbsI | GAAGAC | 3 cut(s) | 235, 428, 692 |
| Bbv12I | GWGCWC | 1 cut(s) | 997 |
| BbvI | GCAGC | 1 cut(s) | 262 |
| BccI | CCATC | 6 cut(s) | 77, 140, 294, 370, 634, 1255 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 557, 591 |
| BciT130I | CCWGG | 1 cut(s) | 68 |
| BciVI | GTATCC | 1 cut(s) | 95 |
| BcoDI | GTCTC | 3 cut(s) | 17, 448, 712 |
| BfaI | CTAG | 4 cut(s) | 20, 489, 753, 840 |
| BfrI | CTTAAG | 2 cut(s) | 74, 137 |
| BfuI | GTATCC | 1 cut(s) | 95 |
| BglII | AGATCT | 1 cut(s) | 1266 |
| BisI | GCNGC | 1 cut(s) | 251 |
| BlsI | GCNGC | 1 cut(s) | 252 |
| Bme1390I | CCNGG | 1 cut(s) | 68 |
| Bme18I | GGWCC | 3 cut(s) | 52, 115, 947 |
| BmeT110I | CYCGRG | 1 cut(s) | 245 |
| BmgBI | CACGTC | 1 cut(s) | 184 |
| BmgT120I | GGNCC | 3 cut(s) | 52, 115, 947 |
| BmiI | GGNNCC | 9 cut(s) | 53, 89, 116, 152, 523, 787, 853, 1001, 1118 |
| BmrFI | CCNGG | 1 cut(s) | 68 |
| BmsI | GCATC | 5 cut(s) | 142, 504, 768, 1122, 1192 |
| BpiI | GAAGAC | 3 cut(s) | 235, 428, 692 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 30, 1089, 1121 |
| Bpu10I | CCTNAGC | 1 cut(s) | 92 |
| BsaBI | GATNNNNATC | 5 cut(s) | 413, 677, 1149, 1265, 1271 |
| BsaJI | CCNNGG | 2 cut(s) | 846, 1003 |
| BsaWI | WCCGGW | 2 cut(s) | 865, 1045 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 112, 967 |
| Bse8I | GATNNNNATC | 5 cut(s) | 413, 677, 1149, 1265, 1271 |
| BseAI | TCCGGA | 1 cut(s) | 865 |
| BseBI | CCWGG | 1 cut(s) | 68 |
| BseDI | CCNNGG | 2 cut(s) | 846, 1003 |
| BseGI | GGATG | 1 cut(s) | 1183 |
| BseJI | GATNNNNATC | 5 cut(s) | 413, 677, 1149, 1265, 1271 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 112, 967 |
| BseMII | CTCAG | 2 cut(s) | 146, 1108 |
| BseRI | GAGGAG | 1 cut(s) | 183 |
| BseSI | GKGCMC | 1 cut(s) | 997 |
| BseXI | GCAGC | 1 cut(s) | 262 |
| BshFI | GGCC | 1 cut(s) | 1037 |
| BshNI | GGYRCC | 2 cut(s) | 521, 785 |
| BsiHKAI | GWGCWC | 1 cut(s) | 997 |
| BsiHKCI | CYCGRG | 1 cut(s) | 245 |
| BsiSI | CCGG | 2 cut(s) | 866, 1046 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 112, 967 |
| BsmAI | GTCTC | 3 cut(s) | 17, 448, 712 |
| BsmBI | CGTCTC | 2 cut(s) | 448, 712 |
| BsnI | GGCC | 1 cut(s) | 1037 |
| BsoBI | CYCGRG | 1 cut(s) | 245 |
| Bsp1286I | GDGCHC | 1 cut(s) | 997 |
| Bsp13I | TCCGGA | 1 cut(s) | 865 |
| BspACI | CCGC | 1 cut(s) | 313 |
| BspANI | GGCC | 1 cut(s) | 1037 |
| BspCNI | CTCAG | 2 cut(s) | 147, 1107 |
| BspEI | TCCGGA | 1 cut(s) | 865 |
| BspHI | TCATGA | 1 cut(s) | 772 |
| BspLI | GGNNCC | 9 cut(s) | 53, 89, 116, 152, 523, 787, 853, 1001, 1118 |
| BspPI | GGATC | 7 cut(s) | 78, 82, 95, 145, 157, 158, 1158 |
| BspT107I | GGYRCC | 2 cut(s) | 521, 785 |
| BspTI | CTTAAG | 2 cut(s) | 74, 137 |
| BssECI | CCNNGG | 2 cut(s) | 846, 1003 |
| Bst2UI | CCWGG | 1 cut(s) | 68 |
| Bst4CI | ACNGT | 2 cut(s) | 1004, 1081 |
| Bst6I | CTCTTC | 1 cut(s) | 1016 |
| BstAFI | CTTAAG | 2 cut(s) | 74, 137 |
| BstC8I | GCNNGC | 2 cut(s) | 131, 993 |
| BstDEI | CTNAG | 7 cut(s) | 92, 155, 289, 553, 918, 1094, 1141 |
| BstDSI | CCRYGG | 2 cut(s) | 846, 1003 |
| BstF5I | GGATG | 1 cut(s) | 1183 |
| BstHHI | GCGC | 4 cut(s) | 35, 66, 98, 129 |
| BstMAI | GTCTC | 3 cut(s) | 17, 448, 712 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1231 |
| BstNI | CCWGG | 1 cut(s) | 68 |
| BstNSI | RCATGY | 1 cut(s) | 1019 |
| BstSCI | CCNGG | 1 cut(s) | 66 |
| BstSLI | GKGCMC | 1 cut(s) | 997 |
| BstV1I | GCAGC | 1 cut(s) | 262 |
| BstV2I | GAAGAC | 3 cut(s) | 235, 428, 692 |
| BstX2I | RGATCY | 4 cut(s) | 70, 87, 150, 1266 |
| BstYI | RGATCY | 4 cut(s) | 70, 87, 150, 1266 |
| BsuI | GTATCC | 1 cut(s) | 95 |
| BsuRI | GGCC | 1 cut(s) | 1037 |
| BtgI | CCRYGG | 2 cut(s) | 846, 1003 |
| BtrI | CACGTC | 1 cut(s) | 184 |
| BtsCI | GGATG | 1 cut(s) | 1183 |
| BtsIMutI | CAGTG | 2 cut(s) | 399, 663 |
| Cac8I | GCNNGC | 2 cut(s) | 131, 993 |
| CciI | TCATGA | 1 cut(s) | 772 |
| CfoI | GCGC | 4 cut(s) | 35, 66, 98, 129 |
| Cfr13I | GGNCC | 3 cut(s) | 52, 115, 947 |
| CseI | GACGC | 3 cut(s) | 501, 765, 909 |
| Csp6I | GTAC | 4 cut(s) | 159, 335, 599, 1178 |
| CviAII | CATG | 5 cut(s) | 509, 773, 790, 1016, 1242 |
| CviQI | GTAC | 4 cut(s) | 159, 335, 599, 1178 |
| DdeI | CTNAG | 7 cut(s) | 92, 155, 289, 553, 918, 1094, 1141 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 945 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 945 |
| Eam1104I | CTCTTC | 1 cut(s) | 1016 |
| EarI | CTCTTC | 1 cut(s) | 1016 |
| Eco47I | GGWCC | 3 cut(s) | 52, 115, 947 |
| Eco88I | CYCGRG | 1 cut(s) | 245 |
| EcoRI | GAATTC | 2 cut(s) | 380, 644 |
| EcoRII | CCWGG | 1 cut(s) | 66 |
| Esp3I | CGTCTC | 2 cut(s) | 448, 712 |
| FaeI | CATG | 5 cut(s) | 512, 776, 793, 1019, 1245 |
| FatI | CATG | 5 cut(s) | 508, 772, 789, 1015, 1241 |
| FblI | GTMKAC | 1 cut(s) | 1083 |
| Fnu4HI | GCNGC | 1 cut(s) | 251 |
| FokI | GGATG | 1 cut(s) | 1170 |
| Fsp4HI | GCNGC | 1 cut(s) | 251 |
| FspBI | CTAG | 4 cut(s) | 20, 489, 753, 840 |
| GlaI | GCGC | 4 cut(s) | 34, 65, 97, 128 |
| GluI | GCNGC | 1 cut(s) | 251 |
| HaeIII | GGCC | 1 cut(s) | 1037 |
| HapII | CCGG | 2 cut(s) | 866, 1046 |
| HgaI | GACGC | 3 cut(s) | 501, 765, 909 |
| HhaI | GCGC | 4 cut(s) | 35, 66, 98, 129 |
| Hin1II | CATG | 5 cut(s) | 512, 776, 793, 1019, 1245 |
| Hin6I | GCGC | 4 cut(s) | 33, 64, 96, 127 |
| HinP1I | GCGC | 4 cut(s) | 33, 64, 96, 127 |
| HindIII | AAGCTT | 1 cut(s) | 201 |
| HinfI | GANTC | 6 cut(s) | 272, 424, 504, 536, 688, 869 |
| HpaII | CCGG | 2 cut(s) | 866, 1046 |
| Hpy166II | GTNNAC | 7 cut(s) | 389, 653, 995, 1013, 1084, 1159, 1178 |
| Hpy188I | TCNGA | 5 cut(s) | 352, 474, 616, 738, 1097 |
| Hpy8I | GTNNAC | 7 cut(s) | 389, 653, 995, 1013, 1084, 1159, 1178 |
| HpyAV | CCTTC | 5 cut(s) | 445, 584, 709, 898, 965 |
| HpyCH4III | ACNGT | 2 cut(s) | 1004, 1081 |
| HpyCH4IV | ACGT | 4 cut(s) | 183, 264, 528, 940 |
| HpyCH4V | TGCA | 5 cut(s) | 449, 713, 995, 1183, 1198 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1231 |
| HpyF3I | CTNAG | 7 cut(s) | 92, 155, 289, 553, 918, 1094, 1141 |
| HpySE526I | ACGT | 4 cut(s) | 183, 264, 528, 940 |
| Hsp92II | CATG | 5 cut(s) | 512, 776, 793, 1019, 1245 |
| HspAI | GCGC | 4 cut(s) | 33, 64, 96, 127 |
| Kpn2I | TCCGGA | 1 cut(s) | 865 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| Lsp1109I | GCAGC | 1 cut(s) | 262 |
| LweI | GCATC | 5 cut(s) | 142, 504, 768, 1122, 1192 |
| MaeI | CTAG | 4 cut(s) | 20, 489, 753, 840 |
| MaeII | ACGT | 4 cut(s) | 183, 264, 528, 940 |
| MaeIII | GTNAC | 1 cut(s) | 1057 |
| MboII | GAAGA | 6 cut(s) | 240, 433, 697, 838, 1033, 1264 |
| MflI | RGATCY | 4 cut(s) | 70, 87, 150, 1266 |
| MhlI | GDGCHC | 1 cut(s) | 997 |
| MluCI | AATT | 9 cut(s) | 346, 380, 516, 610, 644, 780, 874, 931, 1236 |
| MlyI | GAGTC | 3 cut(s) | 418, 682, 878 |
| MroI | TCCGGA | 1 cut(s) | 865 |
| MroXI | GAANNNNTTC | 2 cut(s) | 357, 621 |
| MseI | TTAA | 2 cut(s) | 75, 138 |
| MslI | CAYNNNNRTG | 2 cut(s) | 821, 1130 |
| MspCI | CTTAAG | 2 cut(s) | 74, 137 |
| MspI | CCGG | 2 cut(s) | 866, 1046 |
| MspR9I | CCNGG | 1 cut(s) | 68 |
| MvaI | CCWGG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1231 |
| NlaIII | CATG | 5 cut(s) | 512, 776, 793, 1019, 1245 |
| NlaIV | GGNNCC | 9 cut(s) | 53, 89, 116, 152, 523, 787, 853, 1001, 1118 |
| NspI | RCATGY | 1 cut(s) | 1019 |
| PaeR7I | CTCGAG | 1 cut(s) | 245 |
| PagI | TCATGA | 1 cut(s) | 772 |
| PciI | ACATGT | 1 cut(s) | 1015 |
| PdmI | GAANNNNTTC | 2 cut(s) | 357, 621 |
| PfeI | GAWTC | 3 cut(s) | 272, 504, 536 |
| PkrI | GCNGC | 1 cut(s) | 252 |
| PleI | GAGTC | 3 cut(s) | 418, 682, 877 |
| PpsI | GAGTC | 3 cut(s) | 418, 682, 877 |
| PscI | ACATGT | 1 cut(s) | 1015 |
| Psp6I | CCWGG | 1 cut(s) | 66 |
| PspGI | CCWGG | 1 cut(s) | 66 |
| PspN4I | GGNNCC | 9 cut(s) | 53, 89, 116, 152, 523, 787, 853, 1001, 1118 |
| PspPI | GGNCC | 3 cut(s) | 52, 115, 947 |
| PspXI | VCTCGAGB | 1 cut(s) | 245 |
| PsuI | RGATCY | 4 cut(s) | 70, 87, 150, 1266 |
| RsaI | GTAC | 4 cut(s) | 160, 336, 600, 1179 |
| RsaNI | GTAC | 4 cut(s) | 159, 335, 599, 1178 |
| RseI | CAYNNNNRTG | 2 cut(s) | 821, 1130 |
| SaqAI | TTAA | 2 cut(s) | 75, 138 |
| SatI | GCNGC | 1 cut(s) | 251 |
| Sau96I | GGNCC | 3 cut(s) | 52, 115, 947 |
| SchI | GAGTC | 3 cut(s) | 418, 682, 878 |
| ScrFI | CCNGG | 1 cut(s) | 68 |
| SduI | GDGCHC | 1 cut(s) | 997 |
| SfaNI | GCATC | 5 cut(s) | 142, 504, 768, 1122, 1192 |
| Sfr274I | CTCGAG | 1 cut(s) | 245 |
| SinI | GGWCC | 3 cut(s) | 52, 115, 947 |
| SlaI | CTCGAG | 1 cut(s) | 245 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 821, 1130 |
| SmlI | CTYRAG | 3 cut(s) | 74, 137, 245 |
| SmoI | CTYRAG | 3 cut(s) | 74, 137, 245 |
| Sse9I | AATT | 9 cut(s) | 346, 380, 516, 610, 644, 780, 874, 931, 1236 |
| SsiI | CCGC | 1 cut(s) | 313 |
| SspMI | CTAG | 4 cut(s) | 20, 489, 753, 840 |
| StyD4I | CCNGG | 1 cut(s) | 66 |
| TaaI | ACNGT | 2 cut(s) | 1004, 1081 |
| TaiI | ACGT | 4 cut(s) | 186, 267, 531, 943 |
| TaqI | TCGA | 6 cut(s) | 246, 417, 681, 883, 1107, 1271 |
| TasI | AATT | 9 cut(s) | 346, 380, 516, 610, 644, 780, 874, 931, 1236 |
| TatI | WGTACW | 3 cut(s) | 334, 598, 1177 |
| TfiI | GAWTC | 3 cut(s) | 272, 504, 536 |
| Tru1I | TTAA | 2 cut(s) | 75, 138 |
| Tru9I | TTAA | 2 cut(s) | 75, 138 |
| TscAI | CASTG | 2 cut(s) | 406, 670 |
| TseI | GCWGC | 1 cut(s) | 250 |
| TspDTI | ATGAA | 2 cut(s) | 761, 806 |
| TspGWI | ACGGA | 5 cut(s) | 44, 107, 257, 521, 1012 |
| TspRI | CASTG | 2 cut(s) | 406, 670 |
| Vha464I | CTTAAG | 2 cut(s) | 74, 137 |
| VneI | GTGCAC | 1 cut(s) | 993 |
| VpaK11BI | GGWCC | 3 cut(s) | 52, 115, 947 |
| XapI | RAATTY | 2 cut(s) | 380, 644 |
| XbaI | TCTAGA | 1 cut(s) | 839 |
| XceI | RCATGY | 1 cut(s) | 1019 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 231, 515 |
| XhoI | CTCGAG | 1 cut(s) | 245 |
| XmiI | GTMKAC | 1 cut(s) | 1083 |
| XmnI | GAANNNNTTC | 2 cut(s) | 357, 621 |
| XspI | CTAG | 4 cut(s) | 20, 489, 753, 840 |