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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 621 |
| AccII | CGCG | 1 cut(s) | 606 |
| AclWI | GGATC | 1 cut(s) | 467 |
| AcsI | RAATTY | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 617 |
| AgsI | TTSAA | 1 cut(s) | 313 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 499 |
| AluI | AGCT | 3 cut(s) | 155, 161, 499 |
| Alw21I | GWGCWC | 1 cut(s) | 501 |
| AlwI | GGATC | 1 cut(s) | 467 |
| AoxI | GGCC | 1 cut(s) | 287 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 365 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| AspLEI | GCGC | 1 cut(s) | 608 |
| BaeGI | GKGCMC | 1 cut(s) | 624 |
| BanI | GGYRCC | 1 cut(s) | 621 |
| BanII | GRGCYC | 1 cut(s) | 501 |
| Bbv12I | GWGCWC | 1 cut(s) | 501 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 279, 433 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 508, 623 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 2 cut(s) | 94, 379 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 141 |
| BsaAI | YACGTR | 1 cut(s) | 568 |
| BsaJI | CCNNGG | 1 cut(s) | 97 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 617 |
| Bse1I | ACTGG | 2 cut(s) | 24, 49 |
| Bse3DI | GCAATG | 1 cut(s) | 399 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseDI | CCNNGG | 1 cut(s) | 97 |
| BseGI | GGATG | 1 cut(s) | 537 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BseMI | GCAATG | 1 cut(s) | 399 |
| BseNI | ACTGG | 2 cut(s) | 24, 49 |
| BseSI | GKGCMC | 1 cut(s) | 624 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 606 |
| BshFI | GGCC | 1 cut(s) | 289 |
| BshNI | GGYRCC | 1 cut(s) | 621 |
| BsiHKAI | GWGCWC | 1 cut(s) | 501 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BsnI | GGCC | 1 cut(s) | 289 |
| Bsp1286I | GDGCHC | 2 cut(s) | 501, 624 |
| Bsp143I | GATC | 1 cut(s) | 459 |
| BspANI | GGCC | 1 cut(s) | 289 |
| BspFNI | CGCG | 1 cut(s) | 606 |
| BspHI | TCATGA | 2 cut(s) | 70, 493 |
| BspLI | GGNNCC | 2 cut(s) | 508, 623 |
| BspPI | GGATC | 1 cut(s) | 467 |
| BspT107I | GGYRCC | 1 cut(s) | 621 |
| BsrDI | GCAATG | 1 cut(s) | 399 |
| BsrI | ACTGG | 2 cut(s) | 24, 49 |
| BssECI | CCNNGG | 1 cut(s) | 97 |
| BssMI | GATC | 1 cut(s) | 459 |
| BssT1I | CCWWGG | 1 cut(s) | 97 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstBAI | YACGTR | 1 cut(s) | 568 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 4 cut(s) | 184, 274, 334, 447 |
| BstF5I | GGATG | 1 cut(s) | 537 |
| BstFNI | CGCG | 1 cut(s) | 606 |
| BstHHI | GCGC | 1 cut(s) | 608 |
| BstKTI | GATC | 1 cut(s) | 462 |
| BstMBI | GATC | 1 cut(s) | 459 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstSLI | GKGCMC | 1 cut(s) | 624 |
| BstUI | CGCG | 1 cut(s) | 606 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 289 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 537 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 2 cut(s) | 70, 493 |
| CfoI | GCGC | 1 cut(s) | 608 |
| CviAII | CATG | 3 cut(s) | 71, 494, 530 |
| CviJI | RGCY | 9 cut(s) | 48, 124, 129, 155, 161, 182, 289, 499, 509 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 124, 129, 155, 161, 182, 289, 499, 509 |
| DdeI | CTNAG | 4 cut(s) | 184, 274, 334, 447 |
| DpnI | GATC | 1 cut(s) | 461 |
| DpnII | GATC | 1 cut(s) | 459 |
| Ecl136II | GAGCTC | 1 cut(s) | 499 |
| Eco130I | CCWWGG | 1 cut(s) | 97 |
| Eco24I | GRGCYC | 1 cut(s) | 501 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 499 |
| EcoICRI | GAGCTC | 1 cut(s) | 499 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 97 |
| EcoT38I | GRGCYC | 1 cut(s) | 501 |
| ErhI | CCWWGG | 1 cut(s) | 97 |
| FaeI | CATG | 3 cut(s) | 74, 497, 533 |
| FaiI | YATR | 6 cut(s) | 72, 306, 495, 531, 555, 600 |
| FatI | CATG | 3 cut(s) | 70, 493, 529 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 524 |
| FriOI | GRGCYC | 1 cut(s) | 501 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GlaI | GCGC | 1 cut(s) | 607 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 289 |
| HhaI | GCGC | 1 cut(s) | 608 |
| Hin1II | CATG | 3 cut(s) | 74, 497, 533 |
| Hin6I | GCGC | 1 cut(s) | 606 |
| HinP1I | GCGC | 1 cut(s) | 606 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 220, 409, 578 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 2 cut(s) | 459, 588 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 71, 91, 119, 269, 313, 494, 561 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| HpyAV | CCTTC | 1 cut(s) | 611 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 567 |
| HpyCH4V | TGCA | 2 cut(s) | 392, 473 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 274, 334, 447 |
| HpySE526I | ACGT | 2 cut(s) | 135, 567 |
| Hsp92II | CATG | 3 cut(s) | 74, 497, 533 |
| HspAI | GCGC | 1 cut(s) | 606 |
| Kzo9I | GATC | 1 cut(s) | 459 |
| LmnI | GCTCC | 4 cut(s) | 34, 246, 506, 613 |
| LpnPI | CCDG | 9 cut(s) | 5, 23, 30, 36, 92, 95, 116, 119, 143 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 379 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 2 cut(s) | 135, 567 |
| MaeIII | GTNAC | 2 cut(s) | 254, 466 |
| MalI | GATC | 1 cut(s) | 461 |
| MboI | GATC | 1 cut(s) | 459 |
| MboII | GAAGA | 1 cut(s) | 559 |
| MhlI | GDGCHC | 2 cut(s) | 501, 624 |
| MluCI | AATT | 3 cut(s) | 365, 556, 595 |
| MlyI | GAGTC | 3 cut(s) | 214, 403, 587 |
| MnlI | CCTC | 3 cut(s) | 181, 193, 399 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MseI | TTAA | 4 cut(s) | 215, 324, 351, 359 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 542 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MvnI | CGCG | 1 cut(s) | 606 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| NdeII | GATC | 1 cut(s) | 459 |
| NlaIII | CATG | 3 cut(s) | 74, 497, 533 |
| NlaIV | GGNNCC | 2 cut(s) | 508, 623 |
| NmuCI | GTSAC | 1 cut(s) | 254 |
| PagI | TCATGA | 2 cut(s) | 70, 493 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 2 cut(s) | 102, 115 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 403, 586 |
| PpsI | GAGTC | 3 cut(s) | 214, 403, 586 |
| Ppu21I | YACGTR | 1 cut(s) | 568 |
| Psp124BI | GAGCTC | 1 cut(s) | 501 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspN4I | GGNNCC | 2 cut(s) | 508, 623 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 542 |
| SacI | GAGCTC | 1 cut(s) | 501 |
| SaqAI | TTAA | 4 cut(s) | 215, 324, 351, 359 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 1 cut(s) | 459 |
| SchI | GAGTC | 3 cut(s) | 214, 403, 587 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 2 cut(s) | 501, 624 |
| SetI | ASST | 8 cut(s) | 12, 138, 157, 163, 422, 491, 501, 570 |
| SfaNI | GCATC | 2 cut(s) | 94, 379 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 542 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 3 cut(s) | 365, 556, 595 |
| SspMI | CTAG | 1 cut(s) | 126 |
| SstI | GAGCTC | 1 cut(s) | 501 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| StyI | CCWWGG | 1 cut(s) | 97 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 570 |
| TaqI | TCGA | 1 cut(s) | 560 |
| TasI | AATT | 3 cut(s) | 365, 556, 595 |
| TfiI | GAWTC | 2 cut(s) | 102, 115 |
| Tru1I | TTAA | 4 cut(s) | 215, 324, 351, 359 |
| Tru9I | TTAA | 4 cut(s) | 215, 324, 351, 359 |
| TseFI | GTSAC | 1 cut(s) | 254 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 254 |
| TspDTI | ATGAA | 3 cut(s) | 17, 59, 482 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| XapI | RAATTY | 1 cut(s) | 365 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |
| XspI | CTAG | 1 cut(s) | 126 |