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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 29 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 673 |
| AccBSI | CCGCTC | 1 cut(s) | 775 |
| AciI | CCGC | 2 cut(s) | 140, 773 |
| AclWI | GGATC | 2 cut(s) | 311, 523 |
| AcsI | RAATTY | 2 cut(s) | 7, 837 |
| AcyI | GRCGYC | 1 cut(s) | 30 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 535, 536, 673 |
| AflIII | ACRYGT | 1 cut(s) | 706 |
| AgsI | TTSAA | 3 cut(s) | 196, 359, 697 |
| AluBI | AGCT | 3 cut(s) | 152, 232, 689 |
| AluI | AGCT | 3 cut(s) | 152, 232, 689 |
| Alw21I | GWGCWC | 2 cut(s) | 282, 292 |
| Alw26I | GTCTC | 2 cut(s) | 507, 707 |
| AlwI | GGATC | 2 cut(s) | 311, 523 |
| AoxI | GGCC | 6 cut(s) | 66, 107, 345, 538, 634, 675 |
| ApaI | GGGCCC | 2 cut(s) | 70, 542 |
| ApeKI | GCWGC | 1 cut(s) | 403 |
| ApoI | RAATTY | 2 cut(s) | 7, 837 |
| AspLEI | GCGC | 2 cut(s) | 32, 174 |
| AspS9I | GGNCC | 6 cut(s) | 66, 67, 107, 538, 539, 676 |
| AsuHPI | GGTGA | 3 cut(s) | 254, 298, 418 |
| BaeGI | GKGCMC | 2 cut(s) | 70, 542 |
| BanI | GGYRCC | 1 cut(s) | 29 |
| BanII | GRGCYC | 4 cut(s) | 70, 483, 542, 646 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 188, 220 |
| BbsI | GAAGAC | 3 cut(s) | 446, 609, 669 |
| Bbv12I | GWGCWC | 2 cut(s) | 282, 292 |
| BbvI | GCAGC | 1 cut(s) | 415 |
| BccI | CCATC | 3 cut(s) | 186, 192, 504 |
| BclI | TGATCA | 1 cut(s) | 582 |
| BcoDI | GTCTC | 2 cut(s) | 507, 707 |
| BfaI | CTAG | 2 cut(s) | 285, 853 |
| BfmI | CTRYAG | 2 cut(s) | 510, 759 |
| BfoI | RGCGCY | 1 cut(s) | 33 |
| BisI | GCNGC | 1 cut(s) | 404 |
| BlpI | GCTNAGC | 1 cut(s) | 465 |
| BlsI | GCNGC | 1 cut(s) | 405 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| BmgT120I | GGNCC | 6 cut(s) | 66, 67, 107, 538, 539, 676 |
| BmiI | GGNNCC | 3 cut(s) | 31, 68, 540 |
| BmsI | GCATC | 2 cut(s) | 64, 342 |
| BpiI | GAAGAC | 3 cut(s) | 446, 609, 669 |
| Bpu10I | CCTNAGC | 1 cut(s) | 153 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 465 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BsaHI | GRCGYC | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 3 cut(s) | 103, 542, 740 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 321, 351 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 535, 536, 673 |
| Bse1I | ACTGG | 1 cut(s) | 828 |
| BseDI | CCNNGG | 3 cut(s) | 103, 542, 740 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 535, 536, 673 |
| BseMII | CTCAG | 5 cut(s) | 144, 356, 456, 744, 798 |
| BseNI | ACTGG | 1 cut(s) | 828 |
| BseSI | GKGCMC | 2 cut(s) | 70, 542 |
| BseXI | GCAGC | 1 cut(s) | 415 |
| BshFI | GGCC | 6 cut(s) | 68, 109, 347, 540, 636, 677 |
| BshNI | GGYRCC | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 2 cut(s) | 282, 292 |
| BslFI | GGGAC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 535, 536, 673 |
| BsmAI | GTCTC | 2 cut(s) | 507, 707 |
| BsmFI | GGGAC | 1 cut(s) | 121 |
| BsnI | GGCC | 6 cut(s) | 68, 109, 347, 540, 636, 677 |
| Bsp120I | GGGCCC | 2 cut(s) | 66, 538 |
| Bsp1286I | GDGCHC | 6 cut(s) | 70, 282, 292, 483, 542, 646 |
| Bsp143I | GATC | 5 cut(s) | 303, 439, 515, 582, 778 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 465 |
| BspACI | CCGC | 2 cut(s) | 140, 773 |
| BspANI | GGCC | 6 cut(s) | 68, 109, 347, 540, 636, 677 |
| BspCNI | CTCAG | 5 cut(s) | 143, 355, 457, 745, 797 |
| BspLI | GGNNCC | 3 cut(s) | 31, 68, 540 |
| BspPI | GGATC | 2 cut(s) | 311, 523 |
| BspT107I | GGYRCC | 1 cut(s) | 29 |
| BsrBI | CCGCTC | 1 cut(s) | 775 |
| BsrI | ACTGG | 1 cut(s) | 828 |
| BssECI | CCNNGG | 3 cut(s) | 103, 542, 740 |
| BssMI | GATC | 5 cut(s) | 303, 439, 515, 582, 778 |
| BssNI | GRCGYC | 1 cut(s) | 30 |
| BssT1I | CCWWGG | 3 cut(s) | 103, 542, 740 |
| Bst4CI | ACNGT | 3 cut(s) | 214, 274, 337 |
| BstACI | GRCGYC | 1 cut(s) | 30 |
| BstC8I | GCNNGC | 1 cut(s) | 646 |
| BstDEI | CTNAG | 7 cut(s) | 130, 153, 342, 465, 617, 753, 784 |
| BstH2I | RGCGCY | 1 cut(s) | 33 |
| BstHHI | GCGC | 2 cut(s) | 32, 174 |
| BstKTI | GATC | 5 cut(s) | 306, 442, 518, 585, 781 |
| BstMAI | GTCTC | 2 cut(s) | 507, 707 |
| BstMBI | GATC | 5 cut(s) | 303, 439, 515, 582, 778 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstNSI | RCATGY | 1 cut(s) | 710 |
| BstSFI | CTRYAG | 2 cut(s) | 510, 759 |
| BstSLI | GKGCMC | 2 cut(s) | 70, 542 |
| BstV1I | GCAGC | 1 cut(s) | 415 |
| BstV2I | GAAGAC | 3 cut(s) | 446, 609, 669 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 104 |
| BsuRI | GGCC | 6 cut(s) | 68, 109, 347, 540, 636, 677 |
| BtsIMutI | CAGTG | 1 cut(s) | 835 |
| Cac8I | GCNNGC | 1 cut(s) | 646 |
| CfoI | GCGC | 2 cut(s) | 32, 174 |
| Cfr13I | GGNCC | 6 cut(s) | 66, 67, 107, 538, 539, 676 |
| CseI | GACGC | 1 cut(s) | 123 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 3 cut(s) | 349, 380, 707 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 7 cut(s) | 130, 153, 342, 465, 617, 753, 784 |
| DinI | GGCGCC | 1 cut(s) | 31 |
| DpnI | GATC | 5 cut(s) | 305, 441, 517, 584, 780 |
| DpnII | GATC | 5 cut(s) | 303, 439, 515, 582, 778 |
| Eco130I | CCWWGG | 3 cut(s) | 103, 542, 740 |
| Eco24I | GRGCYC | 4 cut(s) | 70, 483, 542, 646 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 837 |
| EcoT14I | CCWWGG | 3 cut(s) | 103, 542, 740 |
| EcoT38I | GRGCYC | 4 cut(s) | 70, 483, 542, 646 |
| EgeI | GGCGCC | 1 cut(s) | 31 |
| EheI | GGCGCC | 1 cut(s) | 31 |
| ErhI | CCWWGG | 3 cut(s) | 103, 542, 740 |
| FaeI | CATG | 3 cut(s) | 352, 383, 710 |
| FaiI | YATR | 9 cut(s) | 161, 235, 350, 381, 392, 594, 708, 761, 824 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 210, 242 |
| FaqI | GGGAC | 1 cut(s) | 121 |
| FatI | CATG | 3 cut(s) | 348, 379, 706 |
| FauI | CCCGC | 1 cut(s) | 147 |
| FbaI | TGATCA | 1 cut(s) | 582 |
| Fnu4HI | GCNGC | 1 cut(s) | 404 |
| FriOI | GRGCYC | 4 cut(s) | 70, 483, 542, 646 |
| Fsp4HI | GCNGC | 1 cut(s) | 404 |
| FspBI | CTAG | 2 cut(s) | 285, 853 |
| GlaI | GCGC | 2 cut(s) | 31, 173 |
| GluI | GCNGC | 1 cut(s) | 404 |
| HaeII | RGCGCY | 1 cut(s) | 33 |
| HaeIII | GGCC | 6 cut(s) | 68, 109, 347, 540, 636, 677 |
| HgaI | GACGC | 1 cut(s) | 123 |
| HhaI | GCGC | 2 cut(s) | 32, 174 |
| Hin1I | GRCGYC | 1 cut(s) | 30 |
| Hin1II | CATG | 3 cut(s) | 352, 383, 710 |
| Hin6I | GCGC | 2 cut(s) | 30, 172 |
| HinP1I | GCGC | 2 cut(s) | 30, 172 |
| HindIII | AAGCTT | 1 cut(s) | 687 |
| HinfI | GANTC | 4 cut(s) | 82, 319, 423, 746 |
| HphI | GGTGA | 3 cut(s) | 254, 298, 418 |
| Hpy188I | TCNGA | 5 cut(s) | 439, 579, 736, 754, 787 |
| Hpy188III | TCNNGA | 2 cut(s) | 89, 842 |
| HpyAV | CCTTC | 3 cut(s) | 116, 190, 376 |
| HpyCH4III | ACNGT | 3 cut(s) | 214, 274, 337 |
| HpyCH4IV | ACGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 1 cut(s) | 77 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 7 cut(s) | 130, 153, 342, 465, 617, 753, 784 |
| HpySE526I | ACGT | 1 cut(s) | 292 |
| Hsp92I | GRCGYC | 1 cut(s) | 30 |
| Hsp92II | CATG | 3 cut(s) | 352, 383, 710 |
| HspAI | GCGC | 2 cut(s) | 30, 172 |
| KasI | GGCGCC | 1 cut(s) | 29 |
| Ksp22I | TGATCA | 1 cut(s) | 582 |
| Kzo9I | GATC | 5 cut(s) | 303, 439, 515, 582, 778 |
| LmnI | GCTCC | 1 cut(s) | 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 415 |
| LweI | GCATC | 2 cut(s) | 64, 342 |
| MaeI | CTAG | 2 cut(s) | 285, 853 |
| MaeII | ACGT | 1 cut(s) | 292 |
| MaeIII | GTNAC | 2 cut(s) | 293, 337 |
| MalI | GATC | 5 cut(s) | 305, 441, 517, 584, 780 |
| MbiI | CCGCTC | 1 cut(s) | 775 |
| MboI | GATC | 5 cut(s) | 303, 439, 515, 582, 778 |
| MboII | GAAGA | 4 cut(s) | 446, 502, 614, 674 |
| MhlI | GDGCHC | 6 cut(s) | 70, 282, 292, 483, 542, 646 |
| MluCI | AATT | 5 cut(s) | 7, 17, 533, 811, 837 |
| Mly113I | GGCGCC | 1 cut(s) | 30 |
| MnlI | CCTC | 5 cut(s) | 319, 394, 413, 600, 689 |
| MseI | TTAA | 2 cut(s) | 209, 485 |
| MslI | CAYNNNNRTG | 1 cut(s) | 597 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NarI | GGCGCC | 1 cut(s) | 30 |
| NdeII | GATC | 5 cut(s) | 303, 439, 515, 582, 778 |
| NlaIII | CATG | 3 cut(s) | 352, 383, 710 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 68, 540 |
| NspI | RCATGY | 1 cut(s) | 710 |
| PciI | ACATGT | 1 cut(s) | 706 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 652 |
| PfeI | GAWTC | 4 cut(s) | 82, 319, 423, 746 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 673 |
| PkrI | GCNGC | 1 cut(s) | 405 |
| PluTI | GGCGCC | 1 cut(s) | 33 |
| PscI | ACATGT | 1 cut(s) | 706 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 68, 540 |
| PspOMI | GGGCCC | 2 cut(s) | 66, 538 |
| PspPI | GGNCC | 6 cut(s) | 66, 67, 107, 538, 539, 676 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| RseI | CAYNNNNRTG | 1 cut(s) | 597 |
| SaqAI | TTAA | 2 cut(s) | 209, 485 |
| SatI | GCNGC | 1 cut(s) | 404 |
| Sau3AI | GATC | 5 cut(s) | 303, 439, 515, 582, 778 |
| Sau96I | GGNCC | 6 cut(s) | 66, 67, 107, 538, 539, 676 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SduI | GDGCHC | 6 cut(s) | 70, 282, 292, 483, 542, 646 |
| SfaNI | GCATC | 2 cut(s) | 64, 342 |
| SfcI | CTRYAG | 2 cut(s) | 510, 759 |
| SfoI | GGCGCC | 1 cut(s) | 31 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 597 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 5 cut(s) | 7, 17, 533, 811, 837 |
| SsiI | CCGC | 2 cut(s) | 140, 773 |
| SspDI | GGCGCC | 1 cut(s) | 29 |
| SspI | AATATT | 1 cut(s) | 434 |
| SspMI | CTAG | 2 cut(s) | 285, 853 |
| StyI | CCWWGG | 3 cut(s) | 103, 542, 740 |
| TaaI | ACNGT | 3 cut(s) | 214, 274, 337 |
| TaiI | ACGT | 1 cut(s) | 295 |
| TaqI | TCGA | 2 cut(s) | 90, 777 |
| TasI | AATT | 5 cut(s) | 7, 17, 533, 811, 837 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TfiI | GAWTC | 4 cut(s) | 82, 319, 423, 746 |
| Tru1I | TTAA | 2 cut(s) | 209, 485 |
| Tru9I | TTAA | 2 cut(s) | 209, 485 |
| TscAI | CASTG | 1 cut(s) | 835 |
| TseI | GCWGC | 1 cut(s) | 403 |
| TspDTI | ATGAA | 6 cut(s) | 74, 332, 368, 503, 615, 738 |
| TspRI | CASTG | 1 cut(s) | 835 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 673 |
| XapI | RAATTY | 2 cut(s) | 7, 837 |
| XceI | RCATGY | 1 cut(s) | 710 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XspI | CTAG | 2 cut(s) | 285, 853 |
| ZrmI | AGTACT | 1 cut(s) | 206 |