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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 460 |
| AccI | GTMKAC | 1 cut(s) | 414 |
| AciI | CCGC | 1 cut(s) | 393 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AdeI | CACNNNGTG | 1 cut(s) | 642 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 563 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 2 cut(s) | 583, 634 |
| AluI | AGCT | 2 cut(s) | 583, 634 |
| Alw21I | GWGCWC | 2 cut(s) | 527, 585 |
| Alw26I | GTCTC | 2 cut(s) | 241, 428 |
| AlwI | GGATC | 1 cut(s) | 296 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspS9I | GGNCC | 2 cut(s) | 302, 349 |
| AsuHPI | GGTGA | 1 cut(s) | 591 |
| AsuII | TTCGAA | 1 cut(s) | 497 |
| AvaII | GGWCC | 2 cut(s) | 302, 349 |
| BaeGI | GKGCMC | 1 cut(s) | 570 |
| BanI | GGYRCC | 1 cut(s) | 460 |
| BanII | GRGCYC | 1 cut(s) | 585 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 2 cut(s) | 527, 585 |
| BccI | CCATC | 4 cut(s) | 87, 241, 279, 488 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 86, 120 |
| BcoDI | GTCTC | 2 cut(s) | 241, 428 |
| BfaI | CTAG | 4 cut(s) | 83, 326, 338, 446 |
| Bme18I | GGWCC | 2 cut(s) | 302, 349 |
| BmgT120I | GGNCC | 2 cut(s) | 302, 349 |
| BmiI | GGNNCC | 3 cut(s) | 303, 304, 462 |
| BmsI | GCATC | 2 cut(s) | 187, 562 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| Bpu14I | TTCGAA | 1 cut(s) | 497 |
| BsaBI | GATNNNNATC | 1 cut(s) | 534 |
| BsaWI | WCCGGW | 1 cut(s) | 556 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 563 |
| Bse1I | ACTGG | 1 cut(s) | 42 |
| Bse8I | GATNNNNATC | 1 cut(s) | 534 |
| BseGI | GGATG | 3 cut(s) | 290, 480, 553 |
| BseJI | GATNNNNATC | 1 cut(s) | 534 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 563 |
| BseMII | CTCAG | 1 cut(s) | 512 |
| BseNI | ACTGG | 1 cut(s) | 42 |
| BseSI | GKGCMC | 1 cut(s) | 570 |
| BsgI | GTGCAG | 1 cut(s) | 300 |
| BshNI | GGYRCC | 1 cut(s) | 460 |
| BsiHKAI | GWGCWC | 2 cut(s) | 527, 585 |
| BsiSI | CCGG | 1 cut(s) | 557 |
| BslFI | GGGAC | 1 cut(s) | 315 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 563 |
| BsmAI | GTCTC | 2 cut(s) | 241, 428 |
| BsmFI | GGGAC | 1 cut(s) | 315 |
| BsmI | GAATGC | 1 cut(s) | 50 |
| Bsp119I | TTCGAA | 1 cut(s) | 497 |
| Bsp1286I | GDGCHC | 3 cut(s) | 527, 570, 585 |
| Bsp143I | GATC | 4 cut(s) | 189, 288, 654, 666 |
| BspACI | CCGC | 1 cut(s) | 393 |
| BspCNI | CTCAG | 1 cut(s) | 513 |
| BspHI | TCATGA | 1 cut(s) | 585 |
| BspLI | GGNNCC | 3 cut(s) | 303, 304, 462 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BspT104I | TTCGAA | 1 cut(s) | 497 |
| BspT107I | GGYRCC | 1 cut(s) | 460 |
| BsrI | ACTGG | 1 cut(s) | 42 |
| BssMI | GATC | 4 cut(s) | 189, 288, 654, 666 |
| BstBI | TTCGAA | 1 cut(s) | 497 |
| BstDEI | CTNAG | 3 cut(s) | 255, 473, 521 |
| BstF5I | GGATG | 3 cut(s) | 290, 480, 553 |
| BstKTI | GATC | 4 cut(s) | 192, 291, 657, 669 |
| BstMAI | GTCTC | 2 cut(s) | 241, 428 |
| BstMBI | GATC | 4 cut(s) | 189, 288, 654, 666 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 631 |
| BstSLI | GKGCMC | 1 cut(s) | 570 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 457 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 3 cut(s) | 290, 480, 553 |
| BtsIMutI | CAGTG | 1 cut(s) | 35 |
| CciI | TCATGA | 1 cut(s) | 585 |
| Cfr13I | GGNCC | 2 cut(s) | 302, 349 |
| CviAII | CATG | 4 cut(s) | 398, 418, 451, 586 |
| CviJI | RGCY | 6 cut(s) | 25, 442, 449, 479, 583, 634 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 442, 449, 479, 583, 634 |
| DdeI | CTNAG | 3 cut(s) | 255, 473, 521 |
| DpnI | GATC | 4 cut(s) | 191, 290, 656, 668 |
| DpnII | GATC | 4 cut(s) | 189, 288, 654, 666 |
| DraIII | CACNNNGTG | 1 cut(s) | 642 |
| EciI | GGCGGA | 1 cut(s) | 408 |
| Ecl136II | GAGCTC | 1 cut(s) | 583 |
| Eco24I | GRGCYC | 1 cut(s) | 585 |
| Eco47I | GGWCC | 2 cut(s) | 302, 349 |
| Eco53kI | GAGCTC | 1 cut(s) | 583 |
| EcoICRI | GAGCTC | 1 cut(s) | 583 |
| EcoO109I | RGGNCCY | 1 cut(s) | 302 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 585 |
| FaeI | CATG | 4 cut(s) | 401, 421, 454, 589 |
| FaiI | YATR | 9 cut(s) | 99, 354, 399, 419, 452, 533, 587, 615, 641 |
| FaqI | GGGAC | 1 cut(s) | 315 |
| FatI | CATG | 4 cut(s) | 397, 417, 450, 585 |
| FblI | GTMKAC | 1 cut(s) | 414 |
| FokI | GGATG | 3 cut(s) | 297, 467, 540 |
| FriOI | GRGCYC | 1 cut(s) | 585 |
| FspBI | CTAG | 4 cut(s) | 83, 326, 338, 446 |
| HapII | CCGG | 1 cut(s) | 557 |
| Hin1II | CATG | 4 cut(s) | 401, 421, 454, 589 |
| HincII | GTYRAC | 1 cut(s) | 415 |
| HindII | GTYRAC | 1 cut(s) | 415 |
| HinfI | GANTC | 2 cut(s) | 65, 517 |
| HpaII | CCGG | 1 cut(s) | 557 |
| HphI | GGTGA | 1 cut(s) | 591 |
| Hpy166II | GTNNAC | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 246, 522 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 121, 131, 338, 586 |
| Hpy8I | GTNNAC | 1 cut(s) | 415 |
| HpyAV | CCTTC | 2 cut(s) | 15, 367 |
| HpyCH4IV | ACGT | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 631 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 473, 521 |
| HpySE526I | ACGT | 1 cut(s) | 57 |
| Hsp92II | CATG | 4 cut(s) | 401, 421, 454, 589 |
| KflI | GGGWCCC | 1 cut(s) | 302 |
| Kzo9I | GATC | 4 cut(s) | 189, 288, 654, 666 |
| LpnPI | CCDG | 7 cut(s) | 23, 31, 83, 90, 246, 267, 570 |
| LweI | GCATC | 2 cut(s) | 187, 562 |
| MaeI | CTAG | 4 cut(s) | 83, 326, 338, 446 |
| MaeII | ACGT | 1 cut(s) | 57 |
| MaeIII | GTNAC | 4 cut(s) | 33, 62, 376, 597 |
| MalI | GATC | 4 cut(s) | 191, 290, 656, 668 |
| MboI | GATC | 4 cut(s) | 189, 288, 654, 666 |
| MboII | GAAGA | 7 cut(s) | 20, 23, 53, 95, 158, 530, 664 |
| MhlI | GDGCHC | 3 cut(s) | 527, 570, 585 |
| MluCI | AATT | 3 cut(s) | 173, 267, 333 |
| MlyI | GAGTC | 2 cut(s) | 59, 526 |
| MnlI | CCTC | 7 cut(s) | 207, 292, 363, 423, 453, 515, 612 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 4 cut(s) | 159, 167, 210, 320 |
| MslI | CAYNNNNRTG | 4 cut(s) | 455, 485, 530, 590 |
| MspI | CCGG | 1 cut(s) | 557 |
| Mva1269I | GAATGC | 1 cut(s) | 50 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 631 |
| NdeII | GATC | 4 cut(s) | 189, 288, 654, 666 |
| NlaIII | CATG | 4 cut(s) | 401, 421, 454, 589 |
| NlaIV | GGNNCC | 3 cut(s) | 303, 304, 462 |
| NmuCI | GTSAC | 3 cut(s) | 33, 62, 597 |
| NspV | TTCGAA | 1 cut(s) | 497 |
| PagI | TCATGA | 1 cut(s) | 585 |
| PctI | GAATGC | 1 cut(s) | 50 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PleI | GAGTC | 2 cut(s) | 59, 525 |
| PpsI | GAGTC | 2 cut(s) | 59, 525 |
| PpuMI | RGGWCCY | 1 cut(s) | 302 |
| Psp124BI | GAGCTC | 1 cut(s) | 585 |
| Psp5II | RGGWCCY | 1 cut(s) | 302 |
| PspN4I | GGNNCC | 3 cut(s) | 303, 304, 462 |
| PspPI | GGNCC | 2 cut(s) | 302, 349 |
| PspPPI | RGGWCCY | 1 cut(s) | 302 |
| RseI | CAYNNNNRTG | 4 cut(s) | 455, 485, 530, 590 |
| SacI | GAGCTC | 1 cut(s) | 585 |
| SalI | GTCGAC | 1 cut(s) | 413 |
| SaqAI | TTAA | 4 cut(s) | 159, 167, 210, 320 |
| Sau3AI | GATC | 4 cut(s) | 189, 288, 654, 666 |
| Sau96I | GGNCC | 2 cut(s) | 302, 349 |
| SchI | GAGTC | 2 cut(s) | 59, 526 |
| SduI | GDGCHC | 3 cut(s) | 527, 570, 585 |
| SetI | ASST | 8 cut(s) | 60, 84, 320, 378, 507, 585, 604, 636 |
| SfaNI | GCATC | 2 cut(s) | 187, 562 |
| SfuI | TTCGAA | 1 cut(s) | 497 |
| SinI | GGWCC | 2 cut(s) | 302, 349 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 455, 485, 530, 590 |
| Sse9I | AATT | 3 cut(s) | 173, 267, 333 |
| SsiI | CCGC | 1 cut(s) | 393 |
| SspMI | CTAG | 4 cut(s) | 83, 326, 338, 446 |
| SstI | GAGCTC | 1 cut(s) | 585 |
| TaiI | ACGT | 1 cut(s) | 60 |
| TaqI | TCGA | 3 cut(s) | 414, 497, 549 |
| TasI | AATT | 3 cut(s) | 173, 267, 333 |
| Tru1I | TTAA | 4 cut(s) | 159, 167, 210, 320 |
| Tru9I | TTAA | 4 cut(s) | 159, 167, 210, 320 |
| TscAI | CASTG | 1 cut(s) | 42 |
| TseFI | GTSAC | 3 cut(s) | 33, 62, 597 |
| Tsp45I | GTSAC | 3 cut(s) | 33, 62, 597 |
| TspDTI | ATGAA | 3 cut(s) | 17, 21, 602 |
| TspGWI | ACGGA | 1 cut(s) | 50 |
| TspRI | CASTG | 1 cut(s) | 42 |
| VpaK11BI | GGWCC | 2 cut(s) | 302, 349 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 337 |
| XmiI | GTMKAC | 1 cut(s) | 414 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 4 cut(s) | 83, 326, 338, 446 |