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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 510 |
| Acc36I | ACCTGC | 1 cut(s) | 537 |
| AccB1I | GGYRCC | 2 cut(s) | 623, 774 |
| AccBSI | CCGCTC | 1 cut(s) | 475 |
| AccI | GTMKAC | 2 cut(s) | 220, 885 |
| AciI | CCGC | 4 cut(s) | 475, 523, 544, 557 |
| AclWI | GGATC | 1 cut(s) | 712 |
| AcsI | RAATTY | 1 cut(s) | 920 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 1 cut(s) | 653 |
| AfaI | GTAC | 1 cut(s) | 797 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 532, 585, 614, 637 |
| AflIII | ACRYGT | 3 cut(s) | 563, 581, 687 |
| AgsI | TTSAA | 7 cut(s) | 124, 131, 160, 408, 724, 756, 853 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 227 |
| AjnI | CCWGG | 1 cut(s) | 607 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 303, 335 |
| AluBI | AGCT | 6 cut(s) | 64, 188, 244, 346, 368, 752 |
| AluI | AGCT | 6 cut(s) | 64, 188, 244, 346, 368, 752 |
| Alw21I | GWGCWC | 2 cut(s) | 658, 873 |
| Alw26I | GTCTC | 1 cut(s) | 819 |
| Alw44I | GTGCAC | 2 cut(s) | 654, 869 |
| AlwI | GGATC | 1 cut(s) | 712 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| AoxI | GGCC | 1 cut(s) | 410 |
| ApaLI | GTGCAC | 2 cut(s) | 654, 869 |
| ApoI | RAATTY | 1 cut(s) | 920 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 1 cut(s) | 635 |
| AspLEI | GCGC | 4 cut(s) | 76, 87, 147, 468 |
| AspS9I | GGNCC | 2 cut(s) | 411, 512 |
| AsuHPI | GGTGA | 2 cut(s) | 451, 829 |
| AvaII | GGWCC | 1 cut(s) | 512 |
| AvrII | CCTAGG | 1 cut(s) | 635 |
| AxyI | CCTNAGG | 1 cut(s) | 779 |
| BaeGI | GKGCMC | 2 cut(s) | 658, 873 |
| BanI | GGYRCC | 2 cut(s) | 623, 774 |
| BauI | CACGAG | 1 cut(s) | 389 |
| Bbv12I | GWGCWC | 2 cut(s) | 658, 873 |
| BccI | CCATC | 1 cut(s) | 840 |
| BceAI | ACGGC | 1 cut(s) | 866 |
| BciT130I | CCWGG | 1 cut(s) | 609 |
| BciVI | GTATCC | 2 cut(s) | 553, 614 |
| BcoDI | GTCTC | 1 cut(s) | 819 |
| BfaI | CTAG | 3 cut(s) | 77, 636, 749 |
| BfmI | CTRYAG | 1 cut(s) | 197 |
| BfoI | RGCGCY | 2 cut(s) | 77, 88 |
| BfuAI | ACCTGC | 1 cut(s) | 537 |
| BfuI | GTATCC | 2 cut(s) | 553, 614 |
| BlnI | CCTAGG | 1 cut(s) | 635 |
| Bme1390I | CCNGG | 1 cut(s) | 609 |
| Bme18I | GGWCC | 1 cut(s) | 512 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 512 |
| BmiI | GGNNCC | 4 cut(s) | 479, 513, 625, 776 |
| BmrFI | CCNGG | 1 cut(s) | 609 |
| BmsI | GCATC | 2 cut(s) | 43, 868 |
| BoxI | GACNNNNGTC | 1 cut(s) | 690 |
| Bsa29I | ATCGAT | 1 cut(s) | 697 |
| BsaBI | GATNNNNATC | 1 cut(s) | 703 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaJI | CCNNGG | 2 cut(s) | 607, 635 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 580, 610, 616, 646 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 532, 585, 614, 637 |
| Bse21I | CCTNAGG | 1 cut(s) | 779 |
| Bse3DI | GCAATG | 2 cut(s) | 580, 734 |
| Bse8I | GATNNNNATC | 1 cut(s) | 703 |
| BseBI | CCWGG | 1 cut(s) | 609 |
| BseCI | ATCGAT | 1 cut(s) | 697 |
| BseDI | CCNNGG | 2 cut(s) | 607, 635 |
| BseGI | GGATG | 3 cut(s) | 58, 828, 883 |
| BseJI | GATNNNNATC | 1 cut(s) | 703 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 532, 585, 614, 637 |
| BseMI | GCAATG | 2 cut(s) | 580, 734 |
| BseMII | CTCAG | 4 cut(s) | 40, 360, 674, 770 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 2 cut(s) | 658, 873 |
| BshFI | GGCC | 1 cut(s) | 412 |
| BshNI | GGYRCC | 2 cut(s) | 623, 774 |
| BshVI | ATCGAT | 1 cut(s) | 697 |
| BsiHKAI | GWGCWC | 2 cut(s) | 658, 873 |
| BslFI | GGGAC | 1 cut(s) | 516 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 532, 585, 614, 637 |
| BsmAI | GTCTC | 1 cut(s) | 819 |
| BsmFI | GGGAC | 1 cut(s) | 516 |
| BsnI | GGCC | 1 cut(s) | 412 |
| Bsp1286I | GDGCHC | 2 cut(s) | 658, 873 |
| Bsp143I | GATC | 2 cut(s) | 45, 704 |
| BspACI | CCGC | 4 cut(s) | 475, 523, 544, 557 |
| BspANI | GGCC | 1 cut(s) | 412 |
| BspCNI | CTCAG | 4 cut(s) | 39, 361, 673, 771 |
| BspDI | ATCGAT | 1 cut(s) | 697 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 4 cut(s) | 479, 513, 625, 776 |
| BspMI | ACCTGC | 1 cut(s) | 537 |
| BspPI | GGATC | 1 cut(s) | 712 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 2 cut(s) | 623, 774 |
| BsrBI | CCGCTC | 1 cut(s) | 475 |
| BsrDI | GCAATG | 2 cut(s) | 580, 734 |
| BssECI | CCNNGG | 2 cut(s) | 607, 635 |
| BssMI | GATC | 2 cut(s) | 45, 704 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 1 cut(s) | 389 |
| BssT1I | CCWWGG | 1 cut(s) | 635 |
| Bst2BI | CACGAG | 1 cut(s) | 389 |
| Bst2UI | CCWGG | 1 cut(s) | 609 |
| Bst4CI | ACNGT | 1 cut(s) | 201 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstC8I | GCNNGC | 2 cut(s) | 739, 743 |
| BstDEI | CTNAG | 5 cut(s) | 26, 369, 483, 660, 779 |
| BstF5I | GGATG | 3 cut(s) | 58, 828, 883 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 88 |
| BstHHI | GCGC | 4 cut(s) | 76, 87, 147, 468 |
| BstKTI | GATC | 2 cut(s) | 48, 707 |
| BstMAI | GTCTC | 1 cut(s) | 819 |
| BstMBI | GATC | 2 cut(s) | 45, 704 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 738 |
| BstNI | CCWGG | 1 cut(s) | 609 |
| BstNSI | RCATGY | 3 cut(s) | 567, 585, 691 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 690 |
| BstSCI | CCNGG | 1 cut(s) | 607 |
| BstSFI | CTRYAG | 1 cut(s) | 197 |
| BstSLI | GKGCMC | 2 cut(s) | 658, 873 |
| Bsu15I | ATCGAT | 1 cut(s) | 697 |
| Bsu36I | CCTNAGG | 1 cut(s) | 779 |
| BsuI | GTATCC | 2 cut(s) | 553, 614 |
| BsuRI | GGCC | 1 cut(s) | 412 |
| BsuTUI | ATCGAT | 1 cut(s) | 697 |
| BtgZI | GCGATG | 1 cut(s) | 108 |
| BtsCI | GGATG | 3 cut(s) | 58, 828, 883 |
| BtsIMutI | CAGTG | 1 cut(s) | 306 |
| BveI | ACCTGC | 1 cut(s) | 537 |
| Cac8I | GCNNGC | 2 cut(s) | 739, 743 |
| CciI | TCATGA | 1 cut(s) | 433 |
| CfoI | GCGC | 4 cut(s) | 76, 87, 147, 468 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 512 |
| ClaI | ATCGAT | 1 cut(s) | 697 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 1 cut(s) | 796 |
| CviAII | CATG | 7 cut(s) | 205, 377, 434, 516, 564, 582, 688 |
| CviJI | RGCY | 8 cut(s) | 64, 188, 244, 281, 346, 368, 412, 752 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 188, 244, 281, 346, 368, 412, 752 |
| CviQI | GTAC | 1 cut(s) | 796 |
| DdeI | CTNAG | 5 cut(s) | 26, 369, 483, 660, 779 |
| DpnI | GATC | 2 cut(s) | 47, 706 |
| DpnII | GATC | 2 cut(s) | 45, 704 |
| DraIII | CACNNNGTG | 1 cut(s) | 653 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 510 |
| DriI | GACNNNNNGTC | 1 cut(s) | 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 510 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 227 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Eco130I | CCWWGG | 1 cut(s) | 635 |
| Eco47I | GGWCC | 1 cut(s) | 512 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| Eco81I | CCTNAGG | 1 cut(s) | 779 |
| EcoRII | CCWGG | 1 cut(s) | 607 |
| EcoT14I | CCWWGG | 1 cut(s) | 635 |
| ErhI | CCWWGG | 1 cut(s) | 635 |
| FaeI | CATG | 7 cut(s) | 208, 380, 437, 519, 567, 585, 691 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 783, 815 |
| FaqI | GGGAC | 1 cut(s) | 516 |
| FatI | CATG | 7 cut(s) | 204, 376, 433, 515, 563, 581, 687 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FblI | GTMKAC | 2 cut(s) | 220, 885 |
| FokI | GGATG | 3 cut(s) | 65, 815, 890 |
| FspBI | CTAG | 3 cut(s) | 77, 636, 749 |
| GlaI | GCGC | 4 cut(s) | 75, 86, 146, 467 |
| HaeII | RGCGCY | 2 cut(s) | 77, 88 |
| HaeIII | GGCC | 1 cut(s) | 412 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 4 cut(s) | 76, 87, 147, 468 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 7 cut(s) | 208, 380, 437, 519, 567, 585, 691 |
| Hin6I | GCGC | 4 cut(s) | 74, 85, 145, 466 |
| HinP1I | GCGC | 4 cut(s) | 74, 85, 145, 466 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HphI | GGTGA | 2 cut(s) | 451, 829 |
| Hpy166II | GTNNAC | 5 cut(s) | 221, 656, 796, 871, 886 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 3 cut(s) | 391, 434, 756 |
| Hpy8I | GTNNAC | 5 cut(s) | 221, 656, 796, 871, 886 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 3 cut(s) | 118, 277, 530 |
| HpyCH4III | ACNGT | 1 cut(s) | 201 |
| HpyCH4IV | ACGT | 1 cut(s) | 505 |
| HpyCH4V | TGCA | 6 cut(s) | 56, 452, 656, 732, 803, 871 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 738 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 369, 483, 660, 779 |
| HpySE526I | ACGT | 1 cut(s) | 505 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 7 cut(s) | 208, 380, 437, 519, 567, 585, 691 |
| HspAI | GCGC | 4 cut(s) | 74, 85, 145, 466 |
| Kzo9I | GATC | 2 cut(s) | 45, 704 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 2 cut(s) | 472, 784 |
| LpnPI | CCDG | 8 cut(s) | 129, 240, 532, 594, 621, 748, 757, 791 |
| LweI | GCATC | 2 cut(s) | 43, 868 |
| MaeI | CTAG | 3 cut(s) | 77, 636, 749 |
| MaeII | ACGT | 1 cut(s) | 505 |
| MaeIII | GTNAC | 3 cut(s) | 166, 229, 518 |
| MalI | GATC | 2 cut(s) | 47, 706 |
| MbiI | CCGCTC | 1 cut(s) | 475 |
| MboI | GATC | 2 cut(s) | 45, 704 |
| MboII | GAAGA | 5 cut(s) | 92, 182, 818, 821, 824 |
| MhlI | GDGCHC | 2 cut(s) | 658, 873 |
| MluCI | AATT | 6 cut(s) | 178, 246, 397, 403, 442, 920 |
| MmeI | TCCRAC | 1 cut(s) | 301 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 665 |
| MslI | CAYNNNNRTG | 3 cut(s) | 389, 699, 876 |
| MspR9I | CCNGG | 1 cut(s) | 609 |
| MvaI | CCWGG | 1 cut(s) | 609 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 738 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 45, 704 |
| NlaIII | CATG | 7 cut(s) | 208, 380, 437, 519, 567, 585, 691 |
| NlaIV | GGNNCC | 4 cut(s) | 479, 513, 625, 776 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NspI | RCATGY | 3 cut(s) | 567, 585, 691 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PciI | ACATGT | 3 cut(s) | 563, 581, 687 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PscI | ACATGT | 3 cut(s) | 563, 581, 687 |
| PshAI | GACNNNNGTC | 1 cut(s) | 690 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| Psp6I | CCWGG | 1 cut(s) | 607 |
| PspGI | CCWGG | 1 cut(s) | 607 |
| PspN4I | GGNNCC | 4 cut(s) | 479, 513, 625, 776 |
| PspPI | GGNCC | 2 cut(s) | 411, 512 |
| RsaI | GTAC | 1 cut(s) | 797 |
| RsaNI | GTAC | 1 cut(s) | 796 |
| RseI | CAYNNNNRTG | 3 cut(s) | 389, 699, 876 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| SaqAI | TTAA | 1 cut(s) | 665 |
| Sau3AI | GATC | 2 cut(s) | 45, 704 |
| Sau96I | GGNCC | 2 cut(s) | 411, 512 |
| ScrFI | CCNGG | 1 cut(s) | 609 |
| SduI | GDGCHC | 2 cut(s) | 658, 873 |
| SfaNI | GCATC | 2 cut(s) | 43, 868 |
| SfcI | CTRYAG | 1 cut(s) | 197 |
| SinI | GGWCC | 1 cut(s) | 512 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 389, 699, 876 |
| Sse9I | AATT | 6 cut(s) | 178, 246, 397, 403, 442, 920 |
| SsiI | CCGC | 4 cut(s) | 475, 523, 544, 557 |
| SspMI | CTAG | 3 cut(s) | 77, 636, 749 |
| StyD4I | CCNGG | 1 cut(s) | 607 |
| StyI | CCWWGG | 1 cut(s) | 635 |
| TaaI | ACNGT | 1 cut(s) | 201 |
| TaiI | ACGT | 1 cut(s) | 508 |
| TaqI | TCGA | 2 cut(s) | 44, 697 |
| TasI | AATT | 6 cut(s) | 178, 246, 397, 403, 442, 920 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 665 |
| Tru9I | TTAA | 1 cut(s) | 665 |
| TscAI | CASTG | 1 cut(s) | 313 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 3 cut(s) | 329, 422, 879 |
| TspGWI | ACGGA | 1 cut(s) | 340 |
| TspRI | CASTG | 1 cut(s) | 313 |
| VneI | GTGCAC | 2 cut(s) | 654, 869 |
| VpaK11BI | GGWCC | 1 cut(s) | 512 |
| XapI | RAATTY | 1 cut(s) | 920 |
| XceI | RCATGY | 3 cut(s) | 567, 585, 691 |
| XmaJI | CCTAGG | 1 cut(s) | 635 |
| XmiI | GTMKAC | 2 cut(s) | 220, 885 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 77, 636, 749 |