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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 9, 33, 36, 58 |
| AclWI | GGATC | 3 cut(s) | 118, 590, 660 |
| AcsI | RAATTY | 1 cut(s) | 467 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AgsI | TTSAA | 3 cut(s) | 209, 415, 663 |
| AjiI | CACGTC | 1 cut(s) | 178 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 327, 359 |
| AleI | CACNNNNGTG | 1 cut(s) | 405 |
| AluBI | AGCT | 4 cut(s) | 197, 203, 601, 611 |
| AluI | AGCT | 4 cut(s) | 197, 203, 601, 611 |
| Alw21I | GWGCWC | 1 cut(s) | 603 |
| Alw26I | GTCTC | 3 cut(s) | 19, 331, 535 |
| AlwI | GGATC | 3 cut(s) | 118, 590, 660 |
| ApeKI | GCWGC | 5 cut(s) | 38, 49, 77, 85, 221 |
| ApoI | RAATTY | 1 cut(s) | 467 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 444 |
| AsuHPI | GGTGA | 2 cut(s) | 6, 22 |
| AsuNHI | GCTAGC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 603 |
| BbsI | GAAGAC | 2 cut(s) | 312, 515 |
| Bbv12I | GWGCWC | 1 cut(s) | 603 |
| BbvI | GCAGC | 5 cut(s) | 25, 61, 72, 89, 233 |
| BccI | CCATC | 3 cut(s) | 257, 381, 535 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 554, 588 |
| BcoDI | GTCTC | 3 cut(s) | 19, 331, 535 |
| BfaI | CTAG | 3 cut(s) | 5, 173, 377 |
| BfmI | CTRYAG | 2 cut(s) | 47, 75 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 230 |
| BisI | GCNGC | 8 cut(s) | 9, 36, 39, 50, 58, 78, 86, 222 |
| BlpI | GCTNAGC | 1 cut(s) | 392 |
| BlsI | GCNGC | 8 cut(s) | 10, 37, 40, 51, 59, 79, 87, 223 |
| BmgBI | CACGTC | 1 cut(s) | 178 |
| BmsI | GCATC | 1 cut(s) | 108 |
| BmtI | GCTAGC | 1 cut(s) | 8 |
| BpiI | GAAGAC | 2 cut(s) | 312, 515 |
| BpmI | CTGGAG | 1 cut(s) | 269 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 392 |
| BpuEI | CTTGAG | 1 cut(s) | 183 |
| Bsa29I | ATCGAT | 1 cut(s) | 564 |
| BsaI | GGTCTC | 1 cut(s) | 331 |
| BsaJI | CCNNGG | 1 cut(s) | 669 |
| Bse1I | ACTGG | 1 cut(s) | 286 |
| Bse3DI | GCAATG | 1 cut(s) | 94 |
| BseCI | ATCGAT | 1 cut(s) | 564 |
| BseDI | CCNNGG | 1 cut(s) | 669 |
| BseGI | GGATG | 4 cut(s) | 99, 252, 280, 639 |
| BseMI | GCAATG | 1 cut(s) | 94 |
| BseNI | ACTGG | 1 cut(s) | 286 |
| BseRI | GAGGAG | 1 cut(s) | 98 |
| BseXI | GCAGC | 5 cut(s) | 25, 61, 72, 89, 233 |
| BshVI | ATCGAT | 1 cut(s) | 564 |
| BsiHKAI | GWGCWC | 1 cut(s) | 603 |
| BsmAI | GTCTC | 3 cut(s) | 19, 331, 535 |
| BsmBI | CGTCTC | 1 cut(s) | 535 |
| Bso31I | GGTCTC | 1 cut(s) | 331 |
| Bsp1286I | GDGCHC | 1 cut(s) | 603 |
| Bsp143I | GATC | 4 cut(s) | 123, 483, 582, 665 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 392 |
| BspACI | CCGC | 4 cut(s) | 9, 33, 36, 58 |
| BspDI | ATCGAT | 1 cut(s) | 564 |
| BspHI | TCATGA | 1 cut(s) | 595 |
| BspMAI | CTGCAG | 2 cut(s) | 51, 79 |
| BspOI | GCTAGC | 1 cut(s) | 8 |
| BspPI | GGATC | 3 cut(s) | 118, 590, 660 |
| BspTNI | GGTCTC | 1 cut(s) | 331 |
| BsrDI | GCAATG | 1 cut(s) | 94 |
| BsrI | ACTGG | 1 cut(s) | 286 |
| BssECI | CCNNGG | 1 cut(s) | 669 |
| BssMI | GATC | 4 cut(s) | 123, 483, 582, 665 |
| Bst4CI | ACNGT | 1 cut(s) | 21 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 90, 159, 195 |
| BstDEI | CTNAG | 3 cut(s) | 226, 392, 549 |
| BstDSI | CCRYGG | 1 cut(s) | 669 |
| BstF5I | GGATG | 4 cut(s) | 99, 252, 280, 639 |
| BstKTI | GATC | 4 cut(s) | 126, 486, 585, 668 |
| BstMAI | GTCTC | 3 cut(s) | 19, 331, 535 |
| BstMBI | GATC | 4 cut(s) | 123, 483, 582, 665 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 77, 209, 218, 230, 239 |
| BstNSI | RCATGY | 1 cut(s) | 92 |
| BstSFI | CTRYAG | 2 cut(s) | 47, 75 |
| BstV1I | GCAGC | 5 cut(s) | 25, 61, 72, 89, 233 |
| BstV2I | GAAGAC | 2 cut(s) | 312, 515 |
| BstX2I | RGATCY | 1 cut(s) | 665 |
| BstYI | RGATCY | 1 cut(s) | 665 |
| Bsu15I | ATCGAT | 1 cut(s) | 564 |
| BsuTUI | ATCGAT | 1 cut(s) | 564 |
| BtgI | CCRYGG | 1 cut(s) | 669 |
| BtgZI | GCGATG | 1 cut(s) | 509 |
| BtrI | CACGTC | 1 cut(s) | 178 |
| BtsCI | GGATG | 4 cut(s) | 99, 252, 280, 639 |
| BtsI | GCAGTG | 1 cut(s) | 80 |
| BtsIMutI | CAGTG | 1 cut(s) | 80 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 90, 159, 195 |
| CciI | TCATGA | 1 cut(s) | 595 |
| ClaI | ATCGAT | 1 cut(s) | 564 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 651 |
| CviAII | CATG | 3 cut(s) | 89, 596, 632 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DdeI | CTNAG | 3 cut(s) | 226, 392, 549 |
| DpnI | GATC | 4 cut(s) | 125, 485, 584, 667 |
| DpnII | GATC | 4 cut(s) | 123, 483, 582, 665 |
| Ecl136II | GAGCTC | 1 cut(s) | 601 |
| Eco24I | GRGCYC | 1 cut(s) | 603 |
| Eco31I | GGTCTC | 1 cut(s) | 331 |
| Eco53kI | GAGCTC | 1 cut(s) | 601 |
| EcoICRI | GAGCTC | 1 cut(s) | 601 |
| EcoRI | GAATTC | 1 cut(s) | 467 |
| EcoT38I | GRGCYC | 1 cut(s) | 603 |
| Esp3I | CGTCTC | 1 cut(s) | 535 |
| FaeI | CATG | 3 cut(s) | 92, 599, 635 |
| FatI | CATG | 3 cut(s) | 88, 595, 631 |
| FauNDI | CATATG | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 8 cut(s) | 9, 36, 39, 50, 58, 78, 86, 222 |
| FokI | GGATG | 4 cut(s) | 86, 239, 287, 626 |
| FriOI | GRGCYC | 1 cut(s) | 603 |
| Fsp4HI | GCNGC | 8 cut(s) | 9, 36, 39, 50, 58, 78, 86, 222 |
| FspBI | CTAG | 3 cut(s) | 5, 173, 377 |
| GluI | GCNGC | 8 cut(s) | 9, 36, 39, 50, 58, 78, 86, 222 |
| GsuI | CTGGAG | 1 cut(s) | 269 |
| Hin1II | CATG | 3 cut(s) | 92, 599, 635 |
| HindIII | AAGCTT | 1 cut(s) | 201 |
| HinfI | GANTC | 6 cut(s) | 27, 262, 278, 359, 511, 561 |
| HphI | GGTGA | 2 cut(s) | 6, 22 |
| Hpy188I | TCNGA | 2 cut(s) | 123, 439 |
| Hpy188III | TCNNGA | 4 cut(s) | 173, 371, 596, 663 |
| HpyAV | CCTTC | 2 cut(s) | 113, 309 |
| HpyCH4III | ACNGT | 1 cut(s) | 21 |
| HpyCH4IV | ACGT | 2 cut(s) | 169, 177 |
| HpyCH4V | TGCA | 8 cut(s) | 49, 77, 88, 99, 141, 157, 536, 575 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 77, 209, 218, 230, 239 |
| HpyF3I | CTNAG | 3 cut(s) | 226, 392, 549 |
| HpySE526I | ACGT | 2 cut(s) | 169, 177 |
| Hsp92II | CATG | 3 cut(s) | 92, 599, 635 |
| Kzo9I | GATC | 4 cut(s) | 123, 483, 582, 665 |
| LmnI | GCTCC | 2 cut(s) | 288, 608 |
| LpnPI | CCDG | 7 cut(s) | 59, 87, 149, 176, 299, 325, 384 |
| Lsp1109I | GCAGC | 5 cut(s) | 25, 61, 72, 89, 233 |
| LweI | GCATC | 1 cut(s) | 108 |
| MaeI | CTAG | 3 cut(s) | 5, 173, 377 |
| MaeII | ACGT | 2 cut(s) | 169, 177 |
| MaeIII | GTNAC | 2 cut(s) | 356, 568 |
| MalI | GATC | 4 cut(s) | 125, 485, 584, 667 |
| MboI | GATC | 4 cut(s) | 123, 483, 582, 665 |
| MboII | GAAGA | 4 cut(s) | 317, 347, 520, 661 |
| MflI | RGATCY | 1 cut(s) | 665 |
| MhlI | GDGCHC | 1 cut(s) | 603 |
| MluCI | AATT | 3 cut(s) | 183, 467, 658 |
| MlyI | GAGTC | 4 cut(s) | 21, 256, 353, 505 |
| MnlI | CCTC | 6 cut(s) | 22, 119, 137, 223, 407, 536 |
| MroXI | GAANNNNTTC | 1 cut(s) | 444 |
| MseI | TTAA | 2 cut(s) | 453, 461 |
| MslI | CAYNNNNRTG | 4 cut(s) | 257, 273, 405, 644 |
| MspA1I | CMGCKG | 1 cut(s) | 38 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 77, 209, 218, 230, 239 |
| NdeI | CATATG | 1 cut(s) | 270 |
| NdeII | GATC | 4 cut(s) | 123, 483, 582, 665 |
| NheI | GCTAGC | 1 cut(s) | 4 |
| NlaIII | CATG | 3 cut(s) | 92, 599, 635 |
| NmuCI | GTSAC | 1 cut(s) | 356 |
| NspI | RCATGY | 1 cut(s) | 92 |
| OliI | CACNNNNGTG | 1 cut(s) | 405 |
| PaeI | GCATGC | 1 cut(s) | 92 |
| PagI | TCATGA | 1 cut(s) | 595 |
| PdmI | GAANNNNTTC | 1 cut(s) | 444 |
| PfeI | GAWTC | 2 cut(s) | 278, 561 |
| PkrI | GCNGC | 8 cut(s) | 10, 37, 40, 51, 59, 79, 87, 223 |
| PleI | GAGTC | 4 cut(s) | 21, 256, 353, 505 |
| PpsI | GAGTC | 4 cut(s) | 21, 256, 353, 505 |
| Psp124BI | GAGCTC | 1 cut(s) | 603 |
| PstI | CTGCAG | 2 cut(s) | 51, 79 |
| PsuI | RGATCY | 1 cut(s) | 665 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| RseI | CAYNNNNRTG | 4 cut(s) | 257, 273, 405, 644 |
| SacI | GAGCTC | 1 cut(s) | 603 |
| SaqAI | TTAA | 2 cut(s) | 453, 461 |
| SatI | GCNGC | 8 cut(s) | 9, 36, 39, 50, 58, 78, 86, 222 |
| Sau3AI | GATC | 4 cut(s) | 123, 483, 582, 665 |
| SchI | GAGTC | 4 cut(s) | 21, 256, 353, 505 |
| SduI | GDGCHC | 1 cut(s) | 603 |
| SetI | ASST | 9 cut(s) | 172, 180, 199, 205, 320, 378, 593, 603, 613 |
| SfaNI | GCATC | 1 cut(s) | 108 |
| SfcI | CTRYAG | 2 cut(s) | 47, 75 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 257, 273, 405, 644 |
| SmlI | CTYRAG | 1 cut(s) | 198 |
| SmoI | CTYRAG | 1 cut(s) | 198 |
| SphI | GCATGC | 1 cut(s) | 92 |
| Sse9I | AATT | 3 cut(s) | 183, 467, 658 |
| SsiI | CCGC | 4 cut(s) | 9, 33, 36, 58 |
| SspMI | CTAG | 3 cut(s) | 5, 173, 377 |
| SstI | GAGCTC | 1 cut(s) | 603 |
| TaaI | ACNGT | 1 cut(s) | 21 |
| TaiI | ACGT | 2 cut(s) | 172, 180 |
| TaqI | TCGA | 3 cut(s) | 333, 559, 564 |
| TasI | AATT | 3 cut(s) | 183, 467, 658 |
| TauI | GCSGC | 3 cut(s) | 11, 38, 60 |
| TfiI | GAWTC | 2 cut(s) | 278, 561 |
| Tru1I | TTAA | 2 cut(s) | 453, 461 |
| Tru9I | TTAA | 2 cut(s) | 453, 461 |
| TscAI | CASTG | 1 cut(s) | 87 |
| TseFI | GTSAC | 1 cut(s) | 356 |
| TseI | GCWGC | 5 cut(s) | 38, 49, 77, 85, 221 |
| Tsp45I | GTSAC | 1 cut(s) | 356 |
| TspDTI | ATGAA | 4 cut(s) | 314, 318, 584, 629 |
| TspGWI | ACGGA | 3 cut(s) | 344, 595, 658 |
| TspRI | CASTG | 1 cut(s) | 87 |
| XapI | RAATTY | 1 cut(s) | 467 |
| XbaI | TCTAGA | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 92 |
| XmnI | GAANNNNTTC | 1 cut(s) | 444 |
| XspI | CTAG | 3 cut(s) | 5, 173, 377 |