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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccBSI | CCGCTC | 2 cut(s) | 271, 353 |
| AciI | CCGC | 2 cut(s) | 271, 353 |
| AclWI | GGATC | 1 cut(s) | 131 |
| AcuI | CTGAAG | 2 cut(s) | 126, 699 |
| AcvI | CACGTG | 1 cut(s) | 362 |
| AdeI | CACNNNGTG | 3 cut(s) | 365, 470, 610 |
| AfaI | GTAC | 2 cut(s) | 103, 614 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 381, 410 |
| AflIII | ACRYGT | 1 cut(s) | 359 |
| AgsI | TTSAA | 6 cut(s) | 204, 343, 484, 541, 573, 673 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 23, 390 |
| AluBI | AGCT | 6 cut(s) | 40, 142, 164, 428, 569, 677 |
| AluI | AGCT | 6 cut(s) | 40, 142, 164, 428, 569, 677 |
| Alw21I | GWGCWC | 2 cut(s) | 475, 606 |
| Alw44I | GTGCAC | 1 cut(s) | 471 |
| AlwI | GGATC | 1 cut(s) | 131 |
| Ama87I | CYCGRG | 1 cut(s) | 595 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApaLI | GTGCAC | 1 cut(s) | 471 |
| ApeKI | GCWGC | 1 cut(s) | 701 |
| AspA2I | CCTAGG | 2 cut(s) | 278, 452 |
| AspLEI | GCGC | 2 cut(s) | 264, 443 |
| AspS9I | GGNCC | 2 cut(s) | 308, 592 |
| AsuHPI | GGTGA | 2 cut(s) | 649, 653 |
| AvaI | CYCGRG | 1 cut(s) | 595 |
| AvaII | GGWCC | 2 cut(s) | 308, 592 |
| AvrII | CCTAGG | 2 cut(s) | 278, 452 |
| BaeGI | GKGCMC | 1 cut(s) | 475 |
| BauI | CACGAG | 2 cut(s) | 185, 429 |
| BbrPI | CACGTG | 1 cut(s) | 362 |
| BbsI | GAAGAC | 2 cut(s) | 56, 651 |
| Bbv12I | GWGCWC | 2 cut(s) | 475, 606 |
| BbvI | GCAGC | 1 cut(s) | 688 |
| BccI | CCATC | 1 cut(s) | 677 |
| BciVI | GTATCC | 1 cut(s) | 349 |
| BfaI | CTAG | 4 cut(s) | 279, 453, 525, 566 |
| BfmI | CTRYAG | 2 cut(s) | 159, 702 |
| BfoI | RGCGCY | 1 cut(s) | 444 |
| BfuI | GTATCC | 1 cut(s) | 349 |
| BisI | GCNGC | 1 cut(s) | 702 |
| BlnI | CCTAGG | 2 cut(s) | 278, 452 |
| BlsI | GCNGC | 1 cut(s) | 703 |
| Bme18I | GGWCC | 2 cut(s) | 308, 592 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 23, 390 |
| BmeT110I | CYCGRG | 1 cut(s) | 595 |
| BmgT120I | GGNCC | 2 cut(s) | 308, 592 |
| BmiI | GGNNCC | 5 cut(s) | 275, 309, 421, 593, 594 |
| BmsI | GCATC | 1 cut(s) | 688 |
| BpiI | GAAGAC | 2 cut(s) | 56, 651 |
| Bsa29I | ATCGAT | 1 cut(s) | 514 |
| BsaAI | YACGTR | 1 cut(s) | 362 |
| BsaJI | CCNNGG | 4 cut(s) | 278, 409, 452, 596 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 257, 258, 381, 410 |
| Bse3DI | GCAATG | 2 cut(s) | 376, 551 |
| BseCI | ATCGAT | 1 cut(s) | 514 |
| BseDI | CCNNGG | 4 cut(s) | 278, 409, 452, 596 |
| BseGI | GGATG | 1 cut(s) | 703 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 381, 410 |
| BseMI | GCAATG | 2 cut(s) | 376, 551 |
| BseMII | CTCAG | 2 cut(s) | 36, 156 |
| BseSI | GKGCMC | 1 cut(s) | 475 |
| BseXI | GCAGC | 1 cut(s) | 688 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BshVI | ATCGAT | 1 cut(s) | 514 |
| BsiHKAI | GWGCWC | 2 cut(s) | 475, 606 |
| BsiHKCI | CYCGRG | 1 cut(s) | 595 |
| BslFI | GGGAC | 4 cut(s) | 303, 312, 397, 605 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 381, 410 |
| BsmFI | GGGAC | 4 cut(s) | 303, 312, 397, 605 |
| BsmI | GAATGC | 1 cut(s) | 693 |
| BsnI | GGCC | 1 cut(s) | 208 |
| BsoBI | CYCGRG | 1 cut(s) | 595 |
| Bsp1286I | GDGCHC | 2 cut(s) | 475, 606 |
| Bsp143I | GATC | 1 cut(s) | 123 |
| BspACI | CCGC | 2 cut(s) | 271, 353 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 2 cut(s) | 37, 157 |
| BspDI | ATCGAT | 1 cut(s) | 514 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 5 cut(s) | 275, 309, 421, 593, 594 |
| BspMAI | CTGCAG | 1 cut(s) | 706 |
| BspPI | GGATC | 1 cut(s) | 131 |
| BsrBI | CCGCTC | 2 cut(s) | 271, 353 |
| BsrDI | GCAATG | 2 cut(s) | 376, 551 |
| BssECI | CCNNGG | 4 cut(s) | 278, 409, 452, 596 |
| BssMI | GATC | 1 cut(s) | 123 |
| BssSI | CACGAG | 2 cut(s) | 185, 429 |
| BssT1I | CCWWGG | 2 cut(s) | 278, 452 |
| Bst2BI | CACGAG | 2 cut(s) | 185, 429 |
| Bst4CI | ACNGT | 1 cut(s) | 101 |
| BstBAI | YACGTR | 1 cut(s) | 362 |
| BstC8I | GCNNGC | 2 cut(s) | 556, 560 |
| BstDEI | CTNAG | 3 cut(s) | 45, 165, 219 |
| BstDSI | CCRYGG | 1 cut(s) | 409 |
| BstF5I | GGATG | 1 cut(s) | 703 |
| BstH2I | RGCGCY | 1 cut(s) | 444 |
| BstHHI | GCGC | 2 cut(s) | 264, 443 |
| BstKTI | GATC | 1 cut(s) | 126 |
| BstMBI | GATC | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 268, 555 |
| BstSFI | CTRYAG | 2 cut(s) | 159, 702 |
| BstSLI | GKGCMC | 1 cut(s) | 475 |
| BstV1I | GCAGC | 1 cut(s) | 688 |
| BstV2I | GAAGAC | 2 cut(s) | 56, 651 |
| Bsu15I | ATCGAT | 1 cut(s) | 514 |
| BsuI | GTATCC | 1 cut(s) | 349 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BsuTUI | ATCGAT | 1 cut(s) | 514 |
| BtgI | CCRYGG | 1 cut(s) | 409 |
| BtsCI | GGATG | 1 cut(s) | 703 |
| Cac8I | GCNNGC | 2 cut(s) | 556, 560 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 2 cut(s) | 264, 443 |
| Cfr13I | GGNCC | 2 cut(s) | 308, 592 |
| ClaI | ATCGAT | 1 cut(s) | 514 |
| Csp6I | GTAC | 2 cut(s) | 102, 613 |
| CviAII | CATG | 3 cut(s) | 173, 230, 293 |
| CviJI | RGCY | 9 cut(s) | 40, 77, 142, 164, 208, 422, 428, 569, 677 |
| CviKI_1 | RGCY | 9 cut(s) | 40, 77, 142, 164, 208, 422, 428, 569, 677 |
| CviQI | GTAC | 2 cut(s) | 102, 613 |
| DdeI | CTNAG | 3 cut(s) | 45, 165, 219 |
| DpnI | GATC | 1 cut(s) | 125 |
| DpnII | GATC | 1 cut(s) | 123 |
| DraIII | CACNNNGTG | 3 cut(s) | 365, 470, 610 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DriI | GACNNNNNGTC | 2 cut(s) | 23, 390 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 23, 390 |
| Eco130I | CCWWGG | 2 cut(s) | 278, 452 |
| Eco147I | AGGCCT | 1 cut(s) | 208 |
| Eco47I | GGWCC | 2 cut(s) | 308, 592 |
| Eco57I | CTGAAG | 2 cut(s) | 126, 699 |
| Eco72I | CACGTG | 1 cut(s) | 362 |
| Eco88I | CYCGRG | 1 cut(s) | 595 |
| EcoO109I | RGGNCCY | 1 cut(s) | 592 |
| EcoT14I | CCWWGG | 2 cut(s) | 278, 452 |
| ErhI | CCWWGG | 2 cut(s) | 278, 452 |
| FaeI | CATG | 3 cut(s) | 176, 233, 296 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 600, 632 |
| FaqI | GGGAC | 4 cut(s) | 303, 312, 397, 605 |
| FatI | CATG | 3 cut(s) | 172, 229, 292 |
| FauNDI | CATATG | 1 cut(s) | 504 |
| Fnu4HI | GCNGC | 1 cut(s) | 702 |
| FokI | GGATG | 1 cut(s) | 710 |
| Fsp4HI | GCNGC | 1 cut(s) | 702 |
| FspBI | CTAG | 4 cut(s) | 279, 453, 525, 566 |
| GlaI | GCGC | 2 cut(s) | 263, 442 |
| GluI | GCNGC | 1 cut(s) | 702 |
| HaeII | RGCGCY | 1 cut(s) | 444 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HhaI | GCGC | 2 cut(s) | 264, 443 |
| Hin1II | CATG | 3 cut(s) | 176, 233, 296 |
| Hin6I | GCGC | 2 cut(s) | 262, 441 |
| HinP1I | GCGC | 2 cut(s) | 262, 441 |
| HinfI | GANTC | 2 cut(s) | 9, 52 |
| HphI | GGTGA | 2 cut(s) | 649, 653 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 473, 613 |
| Hpy188III | TCNNGA | 4 cut(s) | 187, 230, 329, 573 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 473, 613 |
| HpyAV | CCTTC | 3 cut(s) | 73, 326, 478 |
| HpyCH4III | ACNGT | 1 cut(s) | 101 |
| HpyCH4IV | ACGT | 4 cut(s) | 301, 361, 469, 648 |
| HpyCH4V | TGCA | 6 cut(s) | 248, 473, 549, 620, 691, 704 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 268, 555 |
| HpyF3I | CTNAG | 3 cut(s) | 45, 165, 219 |
| HpySE526I | ACGT | 4 cut(s) | 301, 361, 469, 648 |
| Hsp92II | CATG | 3 cut(s) | 176, 233, 296 |
| HspAI | GCGC | 2 cut(s) | 262, 441 |
| KflI | GGGWCCC | 1 cut(s) | 592 |
| Kzo9I | GATC | 1 cut(s) | 123 |
| LmnI | GCTCC | 4 cut(s) | 268, 350, 419, 601 |
| LpnPI | CCDG | 5 cut(s) | 102, 314, 372, 565, 574 |
| Lsp1109I | GCAGC | 1 cut(s) | 688 |
| LweI | GCATC | 1 cut(s) | 688 |
| MaeI | CTAG | 4 cut(s) | 279, 453, 525, 566 |
| MaeII | ACGT | 4 cut(s) | 301, 361, 469, 648 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 1 cut(s) | 125 |
| MbiI | CCGCTC | 2 cut(s) | 271, 353 |
| MboI | GATC | 1 cut(s) | 123 |
| MboII | GAAGA | 7 cut(s) | 61, 635, 638, 641, 644, 656, 692 |
| MfeI | CAATTG | 1 cut(s) | 479 |
| MhlI | GDGCHC | 2 cut(s) | 475, 606 |
| MluCI | AATT | 5 cut(s) | 193, 199, 238, 343, 479 |
| MlyI | GAGTC | 1 cut(s) | 46 |
| MnlI | CCTC | 9 cut(s) | 77, 226, 251, 431, 459, 482, 486, 591, 658 |
| MseI | TTAA | 1 cut(s) | 651 |
| MslI | CAYNNNNRTG | 3 cut(s) | 185, 516, 696 |
| MunI | CAATTG | 1 cut(s) | 479 |
| Mva1269I | GAATGC | 1 cut(s) | 693 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 268, 555 |
| NdeI | CATATG | 1 cut(s) | 504 |
| NdeII | GATC | 1 cut(s) | 123 |
| NlaIII | CATG | 3 cut(s) | 176, 233, 296 |
| NlaIV | GGNNCC | 5 cut(s) | 275, 309, 421, 593, 594 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PceI | AGGCCT | 1 cut(s) | 208 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 466 |
| PctI | GAATGC | 1 cut(s) | 693 |
| PfeI | GAWTC | 1 cut(s) | 9 |
| PkrI | GCNGC | 1 cut(s) | 703 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PmaCI | CACGTG | 1 cut(s) | 362 |
| PmlI | CACGTG | 1 cut(s) | 362 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| Ppu21I | YACGTR | 1 cut(s) | 362 |
| PpuMI | RGGWCCY | 1 cut(s) | 592 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 592 |
| PspCI | CACGTG | 1 cut(s) | 362 |
| PspN4I | GGNNCC | 5 cut(s) | 275, 309, 421, 593, 594 |
| PspPI | GGNCC | 2 cut(s) | 308, 592 |
| PspPPI | RGGWCCY | 1 cut(s) | 592 |
| PstI | CTGCAG | 1 cut(s) | 706 |
| RsaI | GTAC | 2 cut(s) | 103, 614 |
| RsaNI | GTAC | 2 cut(s) | 102, 613 |
| RseI | CAYNNNNRTG | 3 cut(s) | 185, 516, 696 |
| SaqAI | TTAA | 1 cut(s) | 651 |
| SatI | GCNGC | 1 cut(s) | 702 |
| Sau3AI | GATC | 1 cut(s) | 123 |
| Sau96I | GGNCC | 2 cut(s) | 308, 592 |
| SchI | GAGTC | 1 cut(s) | 46 |
| SduI | GDGCHC | 2 cut(s) | 475, 606 |
| SfaNI | GCATC | 1 cut(s) | 688 |
| SfcI | CTRYAG | 2 cut(s) | 159, 702 |
| SinI | GGWCC | 2 cut(s) | 308, 592 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 185, 516, 696 |
| Sse9I | AATT | 5 cut(s) | 193, 199, 238, 343, 479 |
| SseBI | AGGCCT | 1 cut(s) | 208 |
| SsiI | CCGC | 2 cut(s) | 271, 353 |
| SspMI | CTAG | 4 cut(s) | 279, 453, 525, 566 |
| StuI | AGGCCT | 1 cut(s) | 208 |
| StyI | CCWWGG | 2 cut(s) | 278, 452 |
| TaaI | ACNGT | 1 cut(s) | 101 |
| TaiI | ACGT | 4 cut(s) | 304, 364, 472, 651 |
| TaqI | TCGA | 1 cut(s) | 514 |
| TasI | AATT | 5 cut(s) | 193, 199, 238, 343, 479 |
| TfiI | GAWTC | 1 cut(s) | 9 |
| Tru1I | TTAA | 1 cut(s) | 651 |
| Tru9I | TTAA | 1 cut(s) | 651 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 701 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 3 cut(s) | 125, 206, 218 |
| TspGWI | ACGGA | 2 cut(s) | 136, 398 |
| VneI | GTGCAC | 1 cut(s) | 471 |
| VpaK11BI | GGWCC | 2 cut(s) | 308, 592 |
| XmaJI | CCTAGG | 2 cut(s) | 278, 452 |
| XspI | CTAG | 4 cut(s) | 279, 453, 525, 566 |