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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 382 |
| AccII | CGCG | 1 cut(s) | 1169 |
| AccIII | TCCGGA | 3 cut(s) | 201, 429, 1027 |
| AciI | CCGC | 6 cut(s) | 511, 971, 974, 977, 1124, 1169 |
| AclWI | GGATC | 2 cut(s) | 80, 1038 |
| AcoI | YGGCCR | 3 cut(s) | 126, 146, 1121 |
| AcsI | RAATTY | 2 cut(s) | 222, 860 |
| AcuI | CTGAAG | 2 cut(s) | 300, 351 |
| AfaI | GTAC | 2 cut(s) | 321, 680 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 151 |
| AgeI | ACCGGT | 1 cut(s) | 1157 |
| AgsI | TTSAA | 3 cut(s) | 77, 245, 808 |
| AjiI | CACGTC | 1 cut(s) | 389 |
| AjnI | CCWGG | 6 cut(s) | 89, 298, 323, 537, 561, 1211 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 720, 752 |
| AluBI | AGCT | 7 cut(s) | 158, 248, 587, 593, 614, 712, 911 |
| AluI | AGCT | 7 cut(s) | 158, 248, 587, 593, 614, 712, 911 |
| Alw21I | GWGCWC | 1 cut(s) | 1176 |
| Alw26I | GTCTC | 2 cut(s) | 724, 1066 |
| Alw44I | GTGCAC | 1 cut(s) | 1172 |
| AlwI | GGATC | 2 cut(s) | 80, 1038 |
| Ama87I | CYCGRG | 3 cut(s) | 551, 1091, 1200 |
| Aor13HI | TCCGGA | 3 cut(s) | 201, 429, 1027 |
| AoxI | GGCC | 8 cut(s) | 21, 108, 126, 146, 286, 525, 1121, 1209 |
| ApaLI | GTGCAC | 1 cut(s) | 1172 |
| ApeKI | GCWGC | 1 cut(s) | 611 |
| ApoI | RAATTY | 2 cut(s) | 222, 860 |
| AsiGI | ACCGGT | 1 cut(s) | 1157 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 240, 837 |
| AspLEI | GCGC | 1 cut(s) | 1169 |
| AspS9I | GGNCC | 8 cut(s) | 109, 204, 302, 328, 352, 375, 984, 1209 |
| AsuHPI | GGTGA | 2 cut(s) | 1135, 1172 |
| AvaI | CYCGRG | 3 cut(s) | 551, 1091, 1200 |
| AvaII | GGWCC | 6 cut(s) | 204, 302, 328, 352, 375, 984 |
| BaeGI | GKGCMC | 1 cut(s) | 1176 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 303, 336 |
| BauI | CACGAG | 1 cut(s) | 36 |
| Bbv12I | GWGCWC | 1 cut(s) | 1176 |
| BbvI | GCAGC | 1 cut(s) | 623 |
| BccI | CCATC | 5 cut(s) | 647, 659, 774, 1090, 1157 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 773, 807, 1058, 1092 |
| BciT130I | CCWGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| BciVI | GTATCC | 1 cut(s) | 535 |
| BcoDI | GTCTC | 2 cut(s) | 724, 1066 |
| BfaI | CTAG | 3 cut(s) | 558, 705, 770 |
| BfmI | CTRYAG | 2 cut(s) | 335, 1034 |
| BfuI | GTATCC | 1 cut(s) | 535 |
| BisI | GCNGC | 4 cut(s) | 612, 972, 975, 1124 |
| BlsI | GCNGC | 4 cut(s) | 613, 973, 976, 1125 |
| Bme1390I | CCNGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| Bme18I | GGWCC | 6 cut(s) | 204, 302, 328, 352, 375, 984 |
| BmeT110I | CYCGRG | 3 cut(s) | 551, 1091, 1200 |
| BmgBI | CACGTC | 1 cut(s) | 389 |
| BmgT120I | GGNCC | 8 cut(s) | 109, 204, 302, 328, 352, 375, 984, 1209 |
| BmiI | GGNNCC | 7 cut(s) | 111, 262, 304, 329, 330, 354, 377 |
| BmrFI | CCNGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| BmsI | GCATC | 3 cut(s) | 355, 526, 1171 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 895, 927 |
| BpmI | CTGGAG | 1 cut(s) | 659 |
| BpuEI | CTTGAG | 2 cut(s) | 506, 573 |
| BsaI | GGTCTC | 1 cut(s) | 724 |
| BsaJI | CCNNGG | 4 cut(s) | 89, 323, 324, 1212 |
| BsaWI | WCCGGW | 9 cut(s) | 103, 151, 201, 263, 429, 1003, 1027, 1145, 1157 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 924, 954 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 151 |
| Bse118I | RCCGGY | 3 cut(s) | 124, 144, 1157 |
| Bse1I | ACTGG | 5 cut(s) | 187, 289, 481, 497, 676 |
| BseAI | TCCGGA | 3 cut(s) | 201, 429, 1027 |
| BseBI | CCWGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| BseDI | CCNNGG | 4 cut(s) | 89, 323, 324, 1212 |
| BseGI | GGATG | 4 cut(s) | 438, 642, 670, 1186 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 151 |
| BseNI | ACTGG | 5 cut(s) | 187, 289, 481, 497, 676 |
| BseRI | GAGGAG | 1 cut(s) | 1176 |
| BseSI | GKGCMC | 1 cut(s) | 1176 |
| BseX3I | CGGCCG | 2 cut(s) | 126, 1121 |
| BseXI | GCAGC | 1 cut(s) | 623 |
| Bsh1236I | CGCG | 1 cut(s) | 1169 |
| Bsh1285I | CGRYCG | 2 cut(s) | 129, 1124 |
| BshFI | GGCC | 8 cut(s) | 23, 110, 128, 148, 288, 527, 1123, 1211 |
| BshTI | ACCGGT | 1 cut(s) | 1157 |
| BsiEI | CGRYCG | 2 cut(s) | 129, 1124 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1176 |
| BsiHKCI | CYCGRG | 3 cut(s) | 551, 1091, 1200 |
| BslFI | GGGAC | 1 cut(s) | 341 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 151 |
| BsmAI | GTCTC | 2 cut(s) | 724, 1066 |
| BsmFI | GGGAC | 1 cut(s) | 341 |
| BsnI | GGCC | 8 cut(s) | 23, 110, 128, 148, 288, 527, 1123, 1211 |
| Bso31I | GGTCTC | 1 cut(s) | 724 |
| BsoBI | CYCGRG | 3 cut(s) | 551, 1091, 1200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1176 |
| Bsp13I | TCCGGA | 3 cut(s) | 201, 429, 1027 |
| Bsp143I | GATC | 3 cut(s) | 85, 876, 1030 |
| BspACI | CCGC | 6 cut(s) | 511, 971, 974, 977, 1124, 1169 |
| BspANI | GGCC | 8 cut(s) | 23, 110, 128, 148, 288, 527, 1123, 1211 |
| BspEI | TCCGGA | 3 cut(s) | 201, 429, 1027 |
| BspFNI | CGCG | 1 cut(s) | 1169 |
| BspLI | GGNNCC | 7 cut(s) | 111, 262, 304, 329, 330, 354, 377 |
| BspMAI | CTGCAG | 1 cut(s) | 339 |
| BspPI | GGATC | 2 cut(s) | 80, 1038 |
| BspTNI | GGTCTC | 1 cut(s) | 724 |
| BsrFI | RCCGGY | 3 cut(s) | 124, 144, 1157 |
| BsrI | ACTGG | 5 cut(s) | 187, 289, 481, 497, 676 |
| BssAI | RCCGGY | 3 cut(s) | 124, 144, 1157 |
| BssECI | CCNNGG | 4 cut(s) | 89, 323, 324, 1212 |
| BssMI | GATC | 3 cut(s) | 85, 876, 1030 |
| BssSI | CACGAG | 1 cut(s) | 36 |
| Bst2BI | CACGAG | 1 cut(s) | 36 |
| Bst2UI | CCWGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| Bst4CI | ACNGT | 6 cut(s) | 384, 399, 577, 927, 1038, 1137 |
| Bst6I | CTCTTC | 1 cut(s) | 896 |
| BstC8I | GCNNGC | 3 cut(s) | 515, 585, 1067 |
| BstF5I | GGATG | 4 cut(s) | 438, 642, 670, 1186 |
| BstFNI | CGCG | 1 cut(s) | 1169 |
| BstHHI | GCGC | 1 cut(s) | 1169 |
| BstKTI | GATC | 3 cut(s) | 88, 879, 1033 |
| BstMAI | GTCTC | 2 cut(s) | 724, 1066 |
| BstMBI | GATC | 3 cut(s) | 85, 876, 1030 |
| BstMCI | CGRYCG | 2 cut(s) | 129, 1124 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 56, 245, 343, 368, 599, 608, 620, 629 |
| BstNI | CCWGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| BstNSI | RCATGY | 2 cut(s) | 571, 1069 |
| BstSCI | CCNGG | 6 cut(s) | 89, 298, 323, 537, 561, 1211 |
| BstSFI | CTRYAG | 2 cut(s) | 335, 1034 |
| BstSLI | GKGCMC | 1 cut(s) | 1176 |
| BstUI | CGCG | 1 cut(s) | 1169 |
| BstV1I | GCAGC | 1 cut(s) | 623 |
| BstX2I | RGATCY | 1 cut(s) | 1030 |
| BstYI | RGATCY | 1 cut(s) | 1030 |
| BstZI | CGGCCG | 2 cut(s) | 126, 1121 |
| BsuI | GTATCC | 1 cut(s) | 535 |
| BsuRI | GGCC | 8 cut(s) | 23, 110, 128, 148, 288, 527, 1123, 1211 |
| BtgZI | GCGATG | 2 cut(s) | 31, 902 |
| BtrI | CACGTC | 1 cut(s) | 389 |
| BtsCI | GGATG | 4 cut(s) | 438, 642, 670, 1186 |
| BtsI | GCAGTG | 3 cut(s) | 306, 332, 357 |
| BtsIMutI | CAGTG | 5 cut(s) | 306, 332, 357, 380, 490 |
| Cac8I | GCNNGC | 3 cut(s) | 515, 585, 1067 |
| CfoI | GCGC | 1 cut(s) | 1169 |
| Cfr10I | RCCGGY | 3 cut(s) | 124, 144, 1157 |
| Cfr13I | GGNCC | 8 cut(s) | 109, 204, 302, 328, 352, 375, 984, 1209 |
| CseI | GACGC | 1 cut(s) | 1129 |
| Csp6I | GTAC | 2 cut(s) | 320, 679 |
| CspAI | ACCGGT | 1 cut(s) | 1157 |
| CviAII | CATG | 4 cut(s) | 568, 914, 1066, 1177 |
| CviQI | GTAC | 2 cut(s) | 320, 679 |
| DpnI | GATC | 3 cut(s) | 87, 878, 1032 |
| DpnII | GATC | 3 cut(s) | 85, 876, 1030 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 382 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 382 |
| EaeI | YGGCCR | 3 cut(s) | 126, 146, 1121 |
| EagI | CGGCCG | 2 cut(s) | 126, 1121 |
| Eam1104I | CTCTTC | 1 cut(s) | 896 |
| EarI | CTCTTC | 1 cut(s) | 896 |
| EciI | GGCGGA | 2 cut(s) | 500, 992 |
| EclXI | CGGCCG | 2 cut(s) | 126, 1121 |
| Eco31I | GGTCTC | 1 cut(s) | 724 |
| Eco47I | GGWCC | 6 cut(s) | 204, 302, 328, 352, 375, 984 |
| Eco52I | CGGCCG | 2 cut(s) | 126, 1121 |
| Eco57I | CTGAAG | 2 cut(s) | 300, 351 |
| Eco88I | CYCGRG | 3 cut(s) | 551, 1091, 1200 |
| EcoO109I | RGGNCCY | 4 cut(s) | 109, 302, 328, 352 |
| EcoRII | CCWGG | 6 cut(s) | 89, 298, 323, 537, 561, 1211 |
| FaeI | CATG | 4 cut(s) | 571, 917, 1069, 1180 |
| FaqI | GGGAC | 1 cut(s) | 341 |
| FatI | CATG | 4 cut(s) | 567, 913, 1065, 1176 |
| FauNDI | CATATG | 2 cut(s) | 660, 883 |
| Fnu4HI | GCNGC | 4 cut(s) | 612, 972, 975, 1124 |
| FokI | GGATG | 4 cut(s) | 445, 629, 677, 1193 |
| Fsp4HI | GCNGC | 4 cut(s) | 612, 972, 975, 1124 |
| FspBI | CTAG | 3 cut(s) | 558, 705, 770 |
| GlaI | GCGC | 1 cut(s) | 1168 |
| GluI | GCNGC | 4 cut(s) | 612, 972, 975, 1124 |
| GsuI | CTGGAG | 1 cut(s) | 659 |
| HaeIII | GGCC | 8 cut(s) | 23, 110, 128, 148, 288, 527, 1123, 1211 |
| HgaI | GACGC | 1 cut(s) | 1129 |
| HhaI | GCGC | 1 cut(s) | 1169 |
| Hin1II | CATG | 4 cut(s) | 571, 917, 1069, 1180 |
| Hin6I | GCGC | 1 cut(s) | 1167 |
| HinP1I | GCGC | 1 cut(s) | 1167 |
| HincII | GTYRAC | 2 cut(s) | 402, 421 |
| HindII | GTYRAC | 2 cut(s) | 402, 421 |
| HindIII | AAGCTT | 1 cut(s) | 591 |
| HinfI | GANTC | 9 cut(s) | 39, 94, 254, 340, 426, 534, 547, 652, 752 |
| HphI | GGTGA | 2 cut(s) | 1135, 1172 |
| Hpy166II | GTNNAC | 3 cut(s) | 402, 421, 1174 |
| Hpy188I | TCNGA | 1 cut(s) | 484 |
| Hpy8I | GTNNAC | 3 cut(s) | 402, 421, 1174 |
| Hpy99I | CGWCG | 3 cut(s) | 399, 924, 927 |
| HpyAV | CCTTC | 1 cut(s) | 800 |
| HpyCH4III | ACNGT | 6 cut(s) | 384, 399, 577, 927, 1038, 1137 |
| HpyCH4IV | ACGT | 3 cut(s) | 388, 744, 1107 |
| HpyCH4V | TGCA | 4 cut(s) | 172, 337, 1069, 1174 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 56, 245, 343, 368, 599, 608, 620, 629 |
| HpySE526I | ACGT | 3 cut(s) | 388, 744, 1107 |
| Hsp92II | CATG | 4 cut(s) | 571, 917, 1069, 1180 |
| HspAI | GCGC | 1 cut(s) | 1167 |
| KflI | GGGWCCC | 1 cut(s) | 328 |
| Kpn2I | TCCGGA | 3 cut(s) | 201, 429, 1027 |
| Kzo9I | GATC | 3 cut(s) | 85, 876, 1030 |
| LmnI | GCTCC | 5 cut(s) | 163, 466, 678, 1030, 1189 |
| Lsp1109I | GCAGC | 1 cut(s) | 623 |
| LweI | GCATC | 3 cut(s) | 355, 526, 1171 |
| MaeI | CTAG | 3 cut(s) | 558, 705, 770 |
| MaeII | ACGT | 3 cut(s) | 388, 744, 1107 |
| MaeIII | GTNAC | 4 cut(s) | 384, 437, 749, 1141 |
| MalI | GATC | 3 cut(s) | 87, 878, 1032 |
| MboI | GATC | 3 cut(s) | 85, 876, 1030 |
| MboII | GAAGA | 6 cut(s) | 17, 89, 190, 279, 740, 913 |
| MflI | RGATCY | 1 cut(s) | 1030 |
| MhlI | GDGCHC | 1 cut(s) | 1176 |
| MluCI | AATT | 4 cut(s) | 211, 222, 449, 860 |
| MlyI | GAGTC | 5 cut(s) | 48, 103, 349, 646, 746 |
| MnlI | CCTC | 8 cut(s) | 13, 70, 76, 100, 217, 613, 926, 1197 |
| MroI | TCCGGA | 3 cut(s) | 201, 429, 1027 |
| MroXI | GAANNNNTTC | 2 cut(s) | 240, 837 |
| MseI | TTAA | 3 cut(s) | 846, 854, 1219 |
| MslI | CAYNNNNRTG | 3 cut(s) | 647, 663, 1179 |
| MspR9I | CCNGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| MvaI | CCWGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| MvnI | CGCG | 1 cut(s) | 1169 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 56, 245, 343, 368, 599, 608, 620, 629 |
| NdeI | CATATG | 2 cut(s) | 660, 883 |
| NdeII | GATC | 3 cut(s) | 85, 876, 1030 |
| NlaIII | CATG | 4 cut(s) | 571, 917, 1069, 1180 |
| NlaIV | GGNNCC | 7 cut(s) | 111, 262, 304, 329, 330, 354, 377 |
| NmuCI | GTSAC | 3 cut(s) | 384, 749, 1141 |
| NspI | RCATGY | 2 cut(s) | 571, 1069 |
| PaeI | GCATGC | 1 cut(s) | 1069 |
| PaeR7I | CTCGAG | 2 cut(s) | 551, 1091 |
| PasI | CCCWGGG | 1 cut(s) | 324 |
| PdmI | GAANNNNTTC | 2 cut(s) | 240, 837 |
| PfeI | GAWTC | 4 cut(s) | 254, 426, 534, 547 |
| PfoI | TCCNGGA | 2 cut(s) | 298, 537 |
| PinAI | ACCGGT | 1 cut(s) | 1157 |
| PkrI | GCNGC | 4 cut(s) | 613, 973, 976, 1125 |
| PleI | GAGTC | 5 cut(s) | 47, 102, 348, 646, 746 |
| PpsI | GAGTC | 5 cut(s) | 47, 102, 348, 646, 746 |
| PpuMI | RGGWCCY | 3 cut(s) | 302, 328, 352 |
| Psp5II | RGGWCCY | 3 cut(s) | 302, 328, 352 |
| Psp6I | CCWGG | 6 cut(s) | 89, 298, 323, 537, 561, 1211 |
| PspGI | CCWGG | 6 cut(s) | 89, 298, 323, 537, 561, 1211 |
| PspN4I | GGNNCC | 7 cut(s) | 111, 262, 304, 329, 330, 354, 377 |
| PspPI | GGNCC | 8 cut(s) | 109, 204, 302, 328, 352, 375, 984, 1209 |
| PspPPI | RGGWCCY | 3 cut(s) | 302, 328, 352 |
| PstI | CTGCAG | 1 cut(s) | 339 |
| PsuI | RGATCY | 1 cut(s) | 1030 |
| RsaI | GTAC | 2 cut(s) | 321, 680 |
| RsaNI | GTAC | 2 cut(s) | 320, 679 |
| RseI | CAYNNNNRTG | 3 cut(s) | 647, 663, 1179 |
| SaqAI | TTAA | 3 cut(s) | 846, 854, 1219 |
| SatI | GCNGC | 4 cut(s) | 612, 972, 975, 1124 |
| Sau3AI | GATC | 3 cut(s) | 85, 876, 1030 |
| Sau96I | GGNCC | 8 cut(s) | 109, 204, 302, 328, 352, 375, 984, 1209 |
| SchI | GAGTC | 5 cut(s) | 48, 103, 349, 646, 746 |
| ScrFI | CCNGG | 6 cut(s) | 91, 300, 325, 539, 563, 1213 |
| SduI | GDGCHC | 1 cut(s) | 1176 |
| SfaNI | GCATC | 3 cut(s) | 355, 526, 1171 |
| SfcI | CTRYAG | 2 cut(s) | 335, 1034 |
| Sfr274I | CTCGAG | 2 cut(s) | 551, 1091 |
| SinI | GGWCC | 6 cut(s) | 204, 302, 328, 352, 375, 984 |
| SlaI | CTCGAG | 2 cut(s) | 551, 1091 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 647, 663, 1179 |
| SmlI | CTYRAG | 4 cut(s) | 521, 551, 588, 1091 |
| SmoI | CTYRAG | 4 cut(s) | 521, 551, 588, 1091 |
| SphI | GCATGC | 1 cut(s) | 1069 |
| Sse9I | AATT | 4 cut(s) | 211, 222, 449, 860 |
| SsiI | CCGC | 6 cut(s) | 511, 971, 974, 977, 1124, 1169 |
| SspI | AATATT | 1 cut(s) | 180 |
| SspMI | CTAG | 3 cut(s) | 558, 705, 770 |
| StyD4I | CCNGG | 6 cut(s) | 89, 298, 323, 537, 561, 1211 |
| TaaI | ACNGT | 6 cut(s) | 384, 399, 577, 927, 1038, 1137 |
| TaiI | ACGT | 3 cut(s) | 391, 747, 1110 |
| TaqI | TCGA | 4 cut(s) | 84, 552, 726, 1092 |
| TaqII | GACCGA | 1 cut(s) | 438 |
| TasI | AATT | 4 cut(s) | 211, 222, 449, 860 |
| TauI | GCSGC | 3 cut(s) | 974, 977, 1126 |
| TfiI | GAWTC | 4 cut(s) | 254, 426, 534, 547 |
| Tru1I | TTAA | 3 cut(s) | 846, 854, 1219 |
| Tru9I | TTAA | 3 cut(s) | 846, 854, 1219 |
| TscAI | CASTG | 5 cut(s) | 313, 339, 364, 387, 497 |
| TseFI | GTSAC | 3 cut(s) | 384, 749, 1141 |
| TseI | GCWGC | 1 cut(s) | 611 |
| Tsp45I | GTSAC | 3 cut(s) | 384, 749, 1141 |
| TspDTI | ATGAA | 4 cut(s) | 181, 704, 708, 872 |
| TspGWI | ACGGA | 1 cut(s) | 388 |
| TspRI | CASTG | 5 cut(s) | 313, 339, 364, 387, 497 |
| VneI | GTGCAC | 1 cut(s) | 1172 |
| VpaK11BI | GGWCC | 6 cut(s) | 204, 302, 328, 352, 375, 984 |
| XapI | RAATTY | 2 cut(s) | 222, 860 |
| XceI | RCATGY | 2 cut(s) | 571, 1069 |
| XhoI | CTCGAG | 2 cut(s) | 551, 1091 |
| XmnI | GAANNNNTTC | 2 cut(s) | 240, 837 |
| XspI | CTAG | 3 cut(s) | 558, 705, 770 |