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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 513, 558 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 236 |
| AccB1I | GGYRCC | 3 cut(s) | 121, 755, 776 |
| AccBSI | CCGCTC | 2 cut(s) | 586, 668 |
| AccI | GTMKAC | 1 cut(s) | 852 |
| AciI | CCGC | 4 cut(s) | 586, 634, 655, 668 |
| AclWI | GGATC | 2 cut(s) | 141, 446 |
| AcuI | CTGAAG | 3 cut(s) | 441, 933, 945 |
| AcvI | CACGTG | 1 cut(s) | 695 |
| AcyI | GRCGYC | 2 cut(s) | 756, 777 |
| AdeI | CACNNNGTG | 1 cut(s) | 680 |
| AfaI | GTAC | 1 cut(s) | 418 |
| AfeI | AGCGCT | 1 cut(s) | 186 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 572, 573, 643, 696, 725 |
| AflIII | ACRYGT | 2 cut(s) | 674, 692 |
| AgsI | TTSAA | 5 cut(s) | 96, 235, 271, 519, 919 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 271, 338 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 183, 215 |
| AluBI | AGCT | 7 cut(s) | 63, 175, 198, 355, 457, 743, 923 |
| AluI | AGCT | 7 cut(s) | 63, 175, 198, 355, 457, 743, 923 |
| Alw21I | GWGCWC | 1 cut(s) | 939 |
| Alw26I | GTCTC | 1 cut(s) | 885 |
| Alw44I | GTGCAC | 1 cut(s) | 935 |
| AlwI | GGATC | 2 cut(s) | 141, 446 |
| Aor51HI | AGCGCT | 1 cut(s) | 186 |
| ApaLI | GTGCAC | 1 cut(s) | 935 |
| AspA2I | CCTAGG | 2 cut(s) | 593, 788 |
| AspLEI | GCGC | 4 cut(s) | 187, 579, 758, 779 |
| AspS9I | GGNCC | 3 cut(s) | 238, 623, 832 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 373, 761 |
| AvaII | GGWCC | 3 cut(s) | 238, 623, 832 |
| AvrII | CCTAGG | 2 cut(s) | 593, 788 |
| AxyI | CCTNAGG | 1 cut(s) | 836 |
| BaeGI | GKGCMC | 1 cut(s) | 939 |
| BanI | GGYRCC | 3 cut(s) | 121, 755, 776 |
| BauI | CACGAG | 3 cut(s) | 442, 500, 744 |
| BbrPI | CACGTG | 1 cut(s) | 695 |
| BbsI | GAAGAC | 1 cut(s) | 371 |
| Bbv12I | GWGCWC | 1 cut(s) | 939 |
| BccI | CCATC | 3 cut(s) | 93, 746, 878 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BciVI | GTATCC | 1 cut(s) | 664 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 885 |
| BfaI | CTAG | 5 cut(s) | 188, 594, 720, 789, 860 |
| BfoI | RGCGCY | 3 cut(s) | 188, 759, 780 |
| BfuI | GTATCC | 1 cut(s) | 664 |
| BlnI | CCTAGG | 2 cut(s) | 593, 788 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 131 |
| Bme18I | GGWCC | 3 cut(s) | 238, 623, 832 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 271, 338 |
| BmgT120I | GGNCC | 3 cut(s) | 238, 623, 832 |
| BmiI | GGNNCC | 7 cut(s) | 123, 590, 624, 736, 757, 778, 833 |
| BmrFI | CCNGG | 2 cut(s) | 119, 131 |
| BmsI | GCATC | 2 cut(s) | 154, 934 |
| BpiI | GAAGAC | 1 cut(s) | 371 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 2 cut(s) | 677, 695 |
| BsaHI | GRCGYC | 2 cut(s) | 756, 777 |
| BsaJI | CCNNGG | 5 cut(s) | 14, 593, 724, 759, 788 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 691, 721 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 572, 573, 643, 696, 725 |
| Bse21I | CCTNAGG | 1 cut(s) | 836 |
| Bse3DI | GCAATG | 2 cut(s) | 211, 691 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseDI | CCNNGG | 5 cut(s) | 14, 593, 724, 759, 788 |
| BseGI | GGATG | 1 cut(s) | 169 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 572, 573, 643, 696, 725 |
| BseMI | GCAATG | 2 cut(s) | 211, 691 |
| BseMII | CTCAG | 2 cut(s) | 63, 827 |
| BseRI | GAGGAG | 1 cut(s) | 212 |
| BseSI | GKGCMC | 1 cut(s) | 939 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BsgI | GTGCAG | 1 cut(s) | 239 |
| BshNI | GGYRCC | 3 cut(s) | 121, 755, 776 |
| BsiHKAI | GWGCWC | 1 cut(s) | 939 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 2 cut(s) | 618, 845 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 572, 573, 643, 696, 725 |
| BsmAI | GTCTC | 1 cut(s) | 885 |
| BsmBI | CGTCTC | 1 cut(s) | 885 |
| BsmFI | GGGAC | 2 cut(s) | 618, 845 |
| BsmI | GAATGC | 1 cut(s) | 800 |
| Bsp1286I | GDGCHC | 1 cut(s) | 939 |
| Bsp143I | GATC | 3 cut(s) | 133, 156, 438 |
| Bsp19I | CCATGG | 1 cut(s) | 759 |
| BspACI | CCGC | 4 cut(s) | 586, 634, 655, 668 |
| BspCNI | CTCAG | 2 cut(s) | 62, 828 |
| BspHI | TCATGA | 1 cut(s) | 544 |
| BspLI | GGNNCC | 7 cut(s) | 123, 590, 624, 736, 757, 778, 833 |
| BspPI | GGATC | 2 cut(s) | 141, 446 |
| BspQI | GCTCTTC | 1 cut(s) | 306 |
| BspT107I | GGYRCC | 3 cut(s) | 121, 755, 776 |
| BsrBI | CCGCTC | 2 cut(s) | 586, 668 |
| BsrDI | GCAATG | 2 cut(s) | 211, 691 |
| BssECI | CCNNGG | 5 cut(s) | 14, 593, 724, 759, 788 |
| BssMI | GATC | 3 cut(s) | 133, 156, 438 |
| BssNAI | GTATAC | 1 cut(s) | 853 |
| BssNI | GRCGYC | 2 cut(s) | 756, 777 |
| BssSI | CACGAG | 3 cut(s) | 442, 500, 744 |
| BssT1I | CCWWGG | 5 cut(s) | 14, 593, 724, 759, 788 |
| Bst1107I | GTATAC | 1 cut(s) | 853 |
| Bst2BI | CACGAG | 3 cut(s) | 442, 500, 744 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 2 cut(s) | 385, 416 |
| Bst6I | CTCTTC | 2 cut(s) | 186, 306 |
| BstACI | GRCGYC | 2 cut(s) | 756, 777 |
| BstBAI | YACGTR | 2 cut(s) | 677, 695 |
| BstDEI | CTNAG | 3 cut(s) | 49, 534, 836 |
| BstDSI | CCRYGG | 1 cut(s) | 759 |
| BstF5I | GGATG | 1 cut(s) | 169 |
| BstH2I | RGCGCY | 3 cut(s) | 188, 759, 780 |
| BstHHI | GCGC | 4 cut(s) | 187, 579, 758, 779 |
| BstKTI | GATC | 3 cut(s) | 136, 159, 441 |
| BstMAI | GTCTC | 1 cut(s) | 885 |
| BstMBI | GATC | 3 cut(s) | 133, 156, 438 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 583, 720 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 1 cut(s) | 618 |
| BstSCI | CCNGG | 2 cut(s) | 117, 129 |
| BstSLI | GKGCMC | 1 cut(s) | 939 |
| BstV2I | GAAGAC | 1 cut(s) | 371 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BstZ17I | GTATAC | 1 cut(s) | 853 |
| Bsu36I | CCTNAGG | 1 cut(s) | 836 |
| BsuI | GTATCC | 1 cut(s) | 664 |
| BtgI | CCRYGG | 1 cut(s) | 759 |
| BtsCI | GGATG | 1 cut(s) | 169 |
| CciI | TCATGA | 1 cut(s) | 544 |
| CfoI | GCGC | 4 cut(s) | 187, 579, 758, 779 |
| Cfr13I | GGNCC | 3 cut(s) | 238, 623, 832 |
| Csp6I | GTAC | 1 cut(s) | 417 |
| CviAII | CATG | 7 cut(s) | 316, 488, 545, 608, 615, 760, 767 |
| CviQI | GTAC | 1 cut(s) | 417 |
| DdeI | CTNAG | 3 cut(s) | 49, 534, 836 |
| DinI | GGCGCC | 2 cut(s) | 757, 778 |
| DpnI | GATC | 3 cut(s) | 135, 158, 440 |
| DpnII | GATC | 3 cut(s) | 133, 156, 438 |
| DraIII | CACNNNGTG | 1 cut(s) | 680 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 236 |
| DriI | GACNNNNNGTC | 2 cut(s) | 271, 338 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 236 |
| Eam1104I | CTCTTC | 2 cut(s) | 186, 306 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 271, 338 |
| EarI | CTCTTC | 2 cut(s) | 186, 306 |
| EciI | GGCGGA | 1 cut(s) | 623 |
| Eco130I | CCWWGG | 5 cut(s) | 14, 593, 724, 759, 788 |
| Eco47I | GGWCC | 3 cut(s) | 238, 623, 832 |
| Eco47III | AGCGCT | 1 cut(s) | 186 |
| Eco57I | CTGAAG | 3 cut(s) | 441, 933, 945 |
| Eco72I | CACGTG | 1 cut(s) | 695 |
| Eco81I | CCTNAGG | 1 cut(s) | 836 |
| EcoO109I | RGGNCCY | 1 cut(s) | 832 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT14I | CCWWGG | 5 cut(s) | 14, 593, 724, 759, 788 |
| EgeI | GGCGCC | 2 cut(s) | 757, 778 |
| EheI | GGCGCC | 2 cut(s) | 757, 778 |
| ErhI | CCWWGG | 5 cut(s) | 14, 593, 724, 759, 788 |
| Esp3I | CGTCTC | 1 cut(s) | 885 |
| FaeI | CATG | 7 cut(s) | 319, 491, 548, 611, 618, 763, 770 |
| FaqI | GGGAC | 2 cut(s) | 618, 845 |
| FatI | CATG | 7 cut(s) | 315, 487, 544, 607, 614, 759, 766 |
| FblI | GTMKAC | 1 cut(s) | 852 |
| FokI | GGATG | 1 cut(s) | 176 |
| FspBI | CTAG | 5 cut(s) | 188, 594, 720, 789, 860 |
| GlaI | GCGC | 4 cut(s) | 186, 578, 757, 778 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| HaeII | RGCGCY | 3 cut(s) | 188, 759, 780 |
| HapII | CCGG | 1 cut(s) | 131 |
| HhaI | GCGC | 4 cut(s) | 187, 579, 758, 779 |
| Hin1I | GRCGYC | 2 cut(s) | 756, 777 |
| Hin1II | CATG | 7 cut(s) | 319, 491, 548, 611, 618, 763, 770 |
| Hin6I | GCGC | 4 cut(s) | 185, 577, 756, 777 |
| HinP1I | GCGC | 4 cut(s) | 185, 577, 756, 777 |
| HinfI | GANTC | 4 cut(s) | 38, 215, 324, 367 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 2 cut(s) | 373, 761 |
| Hpy166II | GTNNAC | 3 cut(s) | 332, 853, 937 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 295, 952 |
| Hpy188III | TCNNGA | 6 cut(s) | 442, 502, 519, 545, 644, 860 |
| Hpy8I | GTNNAC | 3 cut(s) | 332, 853, 937 |
| HpyAV | CCTTC | 4 cut(s) | 229, 388, 641, 866 |
| HpyCH4III | ACNGT | 2 cut(s) | 385, 416 |
| HpyCH4IV | ACGT | 3 cut(s) | 676, 694, 894 |
| HpyCH4V | TGCA | 5 cut(s) | 167, 256, 563, 809, 937 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 583, 720 |
| HpyF3I | CTNAG | 3 cut(s) | 49, 534, 836 |
| HpySE526I | ACGT | 3 cut(s) | 676, 694, 894 |
| Hsp92I | GRCGYC | 2 cut(s) | 756, 777 |
| Hsp92II | CATG | 7 cut(s) | 319, 491, 548, 611, 618, 763, 770 |
| HspAI | GCGC | 4 cut(s) | 185, 577, 756, 777 |
| KasI | GGCGCC | 2 cut(s) | 755, 776 |
| Kzo9I | GATC | 3 cut(s) | 133, 156, 438 |
| LguI | GCTCTTC | 1 cut(s) | 306 |
| LmnI | GCTCC | 3 cut(s) | 583, 665, 734 |
| LweI | GCATC | 2 cut(s) | 154, 934 |
| MaeI | CTAG | 5 cut(s) | 188, 594, 720, 789, 860 |
| MaeII | ACGT | 3 cut(s) | 676, 694, 894 |
| MaeIII | GTNAC | 2 cut(s) | 67, 340 |
| MalI | GATC | 3 cut(s) | 135, 158, 440 |
| MbiI | CCGCTC | 2 cut(s) | 586, 668 |
| MboI | GATC | 3 cut(s) | 133, 156, 438 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 939 |
| MluCI | AATT | 6 cut(s) | 289, 357, 508, 514, 553, 815 |
| Mly113I | GGCGCC | 2 cut(s) | 756, 777 |
| MlyI | GAGTC | 2 cut(s) | 32, 361 |
| MmeI | TCCRAC | 1 cut(s) | 508 |
| MseI | TTAA | 2 cut(s) | 818, 897 |
| MslI | CAYNNNNRTG | 2 cut(s) | 500, 942 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 119, 131 |
| Mva1269I | GAATGC | 1 cut(s) | 800 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 583, 720 |
| NarI | GGCGCC | 2 cut(s) | 756, 777 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 1 cut(s) | 759 |
| NdeII | GATC | 3 cut(s) | 133, 156, 438 |
| NlaIII | CATG | 7 cut(s) | 319, 491, 548, 611, 618, 763, 770 |
| NlaIV | GGNNCC | 7 cut(s) | 123, 590, 624, 736, 757, 778, 833 |
| NmuCI | GTSAC | 1 cut(s) | 340 |
| NspI | RCATGY | 1 cut(s) | 618 |
| PagI | TCATGA | 1 cut(s) | 544 |
| PciSI | GCTCTTC | 1 cut(s) | 306 |
| PctI | GAATGC | 1 cut(s) | 800 |
| PfeI | GAWTC | 2 cut(s) | 215, 324 |
| PleI | GAGTC | 2 cut(s) | 32, 361 |
| PluTI | GGCGCC | 2 cut(s) | 759, 780 |
| PmaCI | CACGTG | 1 cut(s) | 695 |
| PmlI | CACGTG | 1 cut(s) | 695 |
| PpsI | GAGTC | 2 cut(s) | 32, 361 |
| Ppu21I | YACGTR | 2 cut(s) | 677, 695 |
| PpuMI | RGGWCCY | 1 cut(s) | 832 |
| PsiI | TTATAA | 2 cut(s) | 513, 558 |
| Psp5II | RGGWCCY | 1 cut(s) | 832 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspCI | CACGTG | 1 cut(s) | 695 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 7 cut(s) | 123, 590, 624, 736, 757, 778, 833 |
| PspPI | GGNCC | 3 cut(s) | 238, 623, 832 |
| PspPPI | RGGWCCY | 1 cut(s) | 832 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 418 |
| RsaNI | GTAC | 1 cut(s) | 417 |
| RseI | CAYNNNNRTG | 2 cut(s) | 500, 942 |
| SapI | GCTCTTC | 1 cut(s) | 306 |
| SaqAI | TTAA | 2 cut(s) | 818, 897 |
| Sau3AI | GATC | 3 cut(s) | 133, 156, 438 |
| Sau96I | GGNCC | 3 cut(s) | 238, 623, 832 |
| SchI | GAGTC | 2 cut(s) | 32, 361 |
| ScrFI | CCNGG | 2 cut(s) | 119, 131 |
| SduI | GDGCHC | 1 cut(s) | 939 |
| SfaNI | GCATC | 2 cut(s) | 154, 934 |
| SfoI | GGCGCC | 2 cut(s) | 757, 778 |
| SinI | GGWCC | 3 cut(s) | 238, 623, 832 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 500, 942 |
| Sse9I | AATT | 6 cut(s) | 289, 357, 508, 514, 553, 815 |
| SsiI | CCGC | 4 cut(s) | 586, 634, 655, 668 |
| SspDI | GGCGCC | 2 cut(s) | 755, 776 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 5 cut(s) | 188, 594, 720, 789, 860 |
| StyD4I | CCNGG | 2 cut(s) | 117, 129 |
| StyI | CCWWGG | 5 cut(s) | 14, 593, 724, 759, 788 |
| TaaI | ACNGT | 2 cut(s) | 385, 416 |
| TaiI | ACGT | 3 cut(s) | 679, 697, 897 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 155 |
| TasI | AATT | 6 cut(s) | 289, 357, 508, 514, 553, 815 |
| TfiI | GAWTC | 2 cut(s) | 215, 324 |
| Tru1I | TTAA | 2 cut(s) | 818, 897 |
| Tru9I | TTAA | 2 cut(s) | 818, 897 |
| TseFI | GTSAC | 1 cut(s) | 340 |
| Tsp45I | GTSAC | 1 cut(s) | 340 |
| TspDTI | ATGAA | 6 cut(s) | 24, 440, 533, 624, 894, 945 |
| TspGWI | ACGGA | 1 cut(s) | 451 |
| VneI | GTGCAC | 1 cut(s) | 935 |
| VpaK11BI | GGWCC | 3 cut(s) | 238, 623, 832 |
| XbaI | TCTAGA | 1 cut(s) | 859 |
| XceI | RCATGY | 1 cut(s) | 618 |
| XmaJI | CCTAGG | 2 cut(s) | 593, 788 |
| XmiI | GTMKAC | 1 cut(s) | 852 |
| XspI | CTAG | 5 cut(s) | 188, 594, 720, 789, 860 |