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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 771 |
| AccII | CGCG | 1 cut(s) | 756 |
| AccIII | TCCGGA | 1 cut(s) | 736 |
| AciI | CCGC | 3 cut(s) | 119, 340, 622 |
| AclWI | GGATC | 1 cut(s) | 708 |
| AcoI | YGGCCR | 1 cut(s) | 208 |
| AcsI | RAATTY | 1 cut(s) | 237 |
| AcvI | CACGTG | 1 cut(s) | 52 |
| AcyI | GRCGYC | 1 cut(s) | 772 |
| AfaI | GTAC | 1 cut(s) | 509 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 194 |
| AgsI | TTSAA | 2 cut(s) | 314, 637 |
| AhlI | ACTAGT | 1 cut(s) | 374 |
| AjiI | CACGTC | 6 cut(s) | 27, 76, 100, 125, 149, 397 |
| AjnI | CCWGG | 2 cut(s) | 390, 592 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 549, 581 |
| AluBI | AGCT | 4 cut(s) | 416, 422, 649, 659 |
| AluI | AGCT | 4 cut(s) | 416, 422, 649, 659 |
| Alw21I | GWGCWC | 2 cut(s) | 59, 651 |
| Alw26I | GTCTC | 2 cut(s) | 383, 553 |
| AlwI | GGATC | 1 cut(s) | 708 |
| Ama87I | CYCGRG | 1 cut(s) | 380 |
| Aor13HI | TCCGGA | 1 cut(s) | 736 |
| AoxI | GGCC | 3 cut(s) | 208, 354, 595 |
| ApeKI | GCWGC | 1 cut(s) | 440 |
| ApoI | RAATTY | 1 cut(s) | 237 |
| AspLEI | GCGC | 2 cut(s) | 758, 774 |
| AspS9I | GGNCC | 4 cut(s) | 13, 62, 111, 135 |
| AvaI | CYCGRG | 1 cut(s) | 380 |
| AvaII | GGWCC | 4 cut(s) | 13, 62, 111, 135 |
| BalI | TGGCCA | 1 cut(s) | 210 |
| BanI | GGYRCC | 1 cut(s) | 771 |
| BanII | GRGCYC | 1 cut(s) | 651 |
| BbrPI | CACGTG | 1 cut(s) | 52 |
| BbsI | GAAGAC | 1 cut(s) | 534 |
| Bbv12I | GWGCWC | 2 cut(s) | 59, 651 |
| BbvI | GCAGC | 1 cut(s) | 452 |
| BccI | CCATC | 2 cut(s) | 353, 603 |
| BciT130I | CCWGG | 2 cut(s) | 392, 594 |
| BciVI | GTATCC | 1 cut(s) | 364 |
| BcoDI | GTCTC | 2 cut(s) | 383, 553 |
| BcuI | ACTAGT | 1 cut(s) | 374 |
| BfaI | CTAG | 3 cut(s) | 375, 387, 599 |
| BfoI | RGCGCY | 1 cut(s) | 775 |
| BfuI | GTATCC | 1 cut(s) | 364 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 449 |
| BisI | GCNGC | 1 cut(s) | 441 |
| BlsI | GCNGC | 1 cut(s) | 442 |
| Bme1390I | CCNGG | 2 cut(s) | 392, 594 |
| Bme18I | GGWCC | 4 cut(s) | 13, 62, 111, 135 |
| BmeT110I | CYCGRG | 1 cut(s) | 380 |
| BmgBI | CACGTC | 6 cut(s) | 27, 76, 100, 125, 149, 397 |
| BmgT120I | GGNCC | 4 cut(s) | 13, 62, 111, 135 |
| BmiI | GGNNCC | 5 cut(s) | 15, 64, 113, 137, 773 |
| BmrFI | CCNGG | 2 cut(s) | 392, 594 |
| BmsI | GCATC | 3 cut(s) | 139, 163, 355 |
| BpiI | GAAGAC | 1 cut(s) | 534 |
| BpmI | CTGGAG | 1 cut(s) | 488 |
| BpuEI | CTTGAG | 2 cut(s) | 335, 402 |
| BsaAI | YACGTR | 1 cut(s) | 52 |
| BsaHI | GRCGYC | 1 cut(s) | 772 |
| BsaI | GGTCTC | 1 cut(s) | 553 |
| BsaJI | CCNNGG | 1 cut(s) | 717 |
| BsaWI | WCCGGW | 3 cut(s) | 59, 157, 736 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 194 |
| Bse1I | ACTGG | 3 cut(s) | 180, 310, 505 |
| Bse3DI | GCAATG | 1 cut(s) | 140 |
| BseAI | TCCGGA | 1 cut(s) | 736 |
| BseBI | CCWGG | 2 cut(s) | 392, 594 |
| BseDI | CCNNGG | 1 cut(s) | 717 |
| BseGI | GGATG | 5 cut(s) | 154, 267, 471, 573, 687 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 194 |
| BseMI | GCAATG | 1 cut(s) | 140 |
| BseNI | ACTGG | 3 cut(s) | 180, 310, 505 |
| BseXI | GCAGC | 1 cut(s) | 452 |
| Bsh1236I | CGCG | 1 cut(s) | 756 |
| BshFI | GGCC | 3 cut(s) | 210, 356, 597 |
| BshNI | GGYRCC | 1 cut(s) | 771 |
| BsiHKAI | GWGCWC | 2 cut(s) | 59, 651 |
| BsiHKCI | CYCGRG | 1 cut(s) | 380 |
| BsiSI | CCGG | 4 cut(s) | 60, 158, 195, 737 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 194 |
| BsmAI | GTCTC | 2 cut(s) | 383, 553 |
| BsnI | GGCC | 3 cut(s) | 210, 356, 597 |
| Bso31I | GGTCTC | 1 cut(s) | 553 |
| BsoBI | CYCGRG | 1 cut(s) | 380 |
| Bsp1286I | GDGCHC | 2 cut(s) | 59, 651 |
| Bsp13I | TCCGGA | 1 cut(s) | 736 |
| Bsp143I | GATC | 1 cut(s) | 713 |
| BspACI | CCGC | 3 cut(s) | 119, 340, 622 |
| BspANI | GGCC | 3 cut(s) | 210, 356, 597 |
| BspEI | TCCGGA | 1 cut(s) | 736 |
| BspFNI | CGCG | 1 cut(s) | 756 |
| BspHI | TCATGA | 1 cut(s) | 643 |
| BspLI | GGNNCC | 5 cut(s) | 15, 64, 113, 137, 773 |
| BspPI | GGATC | 1 cut(s) | 708 |
| BspT107I | GGYRCC | 1 cut(s) | 771 |
| BspTNI | GGTCTC | 1 cut(s) | 553 |
| BsrDI | GCAATG | 1 cut(s) | 140 |
| BsrI | ACTGG | 3 cut(s) | 180, 310, 505 |
| BssECI | CCNNGG | 1 cut(s) | 717 |
| BssMI | GATC | 1 cut(s) | 713 |
| BssNI | GRCGYC | 1 cut(s) | 772 |
| Bst2UI | CCWGG | 2 cut(s) | 392, 594 |
| Bst4CI | ACNGT | 1 cut(s) | 406 |
| BstACI | GRCGYC | 1 cut(s) | 772 |
| BstBAI | YACGTR | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 2 cut(s) | 344, 414 |
| BstDEI | CTNAG | 1 cut(s) | 445 |
| BstDSI | CCRYGG | 1 cut(s) | 717 |
| BstF5I | GGATG | 5 cut(s) | 154, 267, 471, 573, 687 |
| BstFNI | CGCG | 1 cut(s) | 756 |
| BstH2I | RGCGCY | 1 cut(s) | 775 |
| BstHHI | GCGC | 2 cut(s) | 758, 774 |
| BstKTI | GATC | 1 cut(s) | 716 |
| BstMAI | GTCTC | 2 cut(s) | 383, 553 |
| BstMBI | GATC | 1 cut(s) | 713 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 29, 54, 127, 151, 428, 437, 449, 458 |
| BstNI | CCWGG | 2 cut(s) | 392, 594 |
| BstSCI | CCNGG | 2 cut(s) | 390, 592 |
| BstUI | CGCG | 1 cut(s) | 756 |
| BstV1I | GCAGC | 1 cut(s) | 452 |
| BstV2I | GAAGAC | 1 cut(s) | 534 |
| BstX2I | RGATCY | 1 cut(s) | 713 |
| BstYI | RGATCY | 1 cut(s) | 713 |
| BsuI | GTATCC | 1 cut(s) | 364 |
| BsuRI | GGCC | 3 cut(s) | 210, 356, 597 |
| BtgI | CCRYGG | 1 cut(s) | 717 |
| BtrI | CACGTC | 6 cut(s) | 27, 76, 100, 125, 149, 397 |
| BtsCI | GGATG | 5 cut(s) | 154, 267, 471, 573, 687 |
| Cac8I | GCNNGC | 2 cut(s) | 344, 414 |
| CciI | TCATGA | 1 cut(s) | 643 |
| CfoI | GCGC | 2 cut(s) | 758, 774 |
| Cfr13I | GGNCC | 4 cut(s) | 13, 62, 111, 135 |
| Csp6I | GTAC | 1 cut(s) | 508 |
| CviAII | CATG | 2 cut(s) | 644, 680 |
| CviQI | GTAC | 1 cut(s) | 508 |
| DdeI | CTNAG | 1 cut(s) | 445 |
| DinI | GGCGCC | 1 cut(s) | 773 |
| DpnI | GATC | 1 cut(s) | 715 |
| DpnII | GATC | 1 cut(s) | 713 |
| EaeI | YGGCCR | 1 cut(s) | 208 |
| EciI | GGCGGA | 1 cut(s) | 329 |
| Ecl136II | GAGCTC | 1 cut(s) | 649 |
| Eco24I | GRGCYC | 1 cut(s) | 651 |
| Eco31I | GGTCTC | 1 cut(s) | 553 |
| Eco32I | GATATC | 1 cut(s) | 337 |
| Eco47I | GGWCC | 4 cut(s) | 13, 62, 111, 135 |
| Eco53kI | GAGCTC | 1 cut(s) | 649 |
| Eco72I | CACGTG | 1 cut(s) | 52 |
| Eco88I | CYCGRG | 1 cut(s) | 380 |
| EcoICRI | GAGCTC | 1 cut(s) | 649 |
| EcoO109I | RGGNCCY | 2 cut(s) | 13, 111 |
| EcoRII | CCWGG | 2 cut(s) | 390, 592 |
| EcoRV | GATATC | 1 cut(s) | 337 |
| EcoT38I | GRGCYC | 1 cut(s) | 651 |
| EgeI | GGCGCC | 1 cut(s) | 773 |
| EheI | GGCGCC | 1 cut(s) | 773 |
| FaeI | CATG | 2 cut(s) | 647, 683 |
| FatI | CATG | 2 cut(s) | 643, 679 |
| Fnu4HI | GCNGC | 1 cut(s) | 441 |
| FokI | GGATG | 5 cut(s) | 141, 274, 458, 560, 674 |
| FriOI | GRGCYC | 1 cut(s) | 651 |
| Fsp4HI | GCNGC | 1 cut(s) | 441 |
| FspBI | CTAG | 3 cut(s) | 375, 387, 599 |
| GlaI | GCGC | 2 cut(s) | 757, 773 |
| GluI | GCNGC | 1 cut(s) | 441 |
| GsuI | CTGGAG | 1 cut(s) | 488 |
| HaeII | RGCGCY | 1 cut(s) | 775 |
| HaeIII | GGCC | 3 cut(s) | 210, 356, 597 |
| HapII | CCGG | 4 cut(s) | 60, 158, 195, 737 |
| HhaI | GCGC | 2 cut(s) | 758, 774 |
| Hin1I | GRCGYC | 1 cut(s) | 772 |
| Hin1II | CATG | 2 cut(s) | 647, 683 |
| Hin6I | GCGC | 2 cut(s) | 756, 772 |
| HinP1I | GCGC | 2 cut(s) | 756, 772 |
| HincII | GTYRAC | 3 cut(s) | 163, 175, 185 |
| HindII | GTYRAC | 3 cut(s) | 163, 175, 185 |
| HindIII | AAGCTT | 1 cut(s) | 420 |
| HinfI | GANTC | 5 cut(s) | 87, 363, 481, 497, 740 |
| HpaII | CCGG | 4 cut(s) | 60, 158, 195, 737 |
| Hpy166II | GTNNAC | 3 cut(s) | 163, 175, 185 |
| Hpy188I | TCNGA | 2 cut(s) | 135, 219 |
| Hpy188III | TCNNGA | 4 cut(s) | 380, 644, 711, 737 |
| Hpy8I | GTNNAC | 3 cut(s) | 163, 175, 185 |
| HpyAV | CCTTC | 3 cut(s) | 478, 531, 762 |
| HpyCH4III | ACNGT | 1 cut(s) | 406 |
| HpyCH4IV | ACGT | 7 cut(s) | 26, 51, 75, 99, 124, 148, 396 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 29, 54, 127, 151, 428, 437, 449, 458 |
| HpyF3I | CTNAG | 1 cut(s) | 445 |
| HpySE526I | ACGT | 7 cut(s) | 26, 51, 75, 99, 124, 148, 396 |
| Hsp92I | GRCGYC | 1 cut(s) | 772 |
| Hsp92II | CATG | 2 cut(s) | 647, 683 |
| HspAI | GCGC | 2 cut(s) | 756, 772 |
| KasI | GGCGCC | 1 cut(s) | 771 |
| Kpn2I | TCCGGA | 1 cut(s) | 736 |
| Kzo9I | GATC | 1 cut(s) | 713 |
| LmnI | GCTCC | 2 cut(s) | 295, 656 |
| Lsp1109I | GCAGC | 1 cut(s) | 452 |
| LweI | GCATC | 3 cut(s) | 139, 163, 355 |
| MaeI | CTAG | 3 cut(s) | 375, 387, 599 |
| MaeII | ACGT | 7 cut(s) | 26, 51, 75, 99, 124, 148, 396 |
| MaeIII | GTNAC | 2 cut(s) | 266, 578 |
| MalI | GATC | 1 cut(s) | 715 |
| MboI | GATC | 1 cut(s) | 713 |
| MboII | GAAGA | 4 cut(s) | 536, 539, 569, 709 |
| MflI | RGATCY | 1 cut(s) | 713 |
| MhlI | GDGCHC | 2 cut(s) | 59, 651 |
| MlsI | TGGCCA | 1 cut(s) | 210 |
| MluCI | AATT | 4 cut(s) | 237, 278, 706, 745 |
| MluNI | TGGCCA | 1 cut(s) | 210 |
| Mly113I | GGCGCC | 1 cut(s) | 772 |
| MlyI | GAGTC | 2 cut(s) | 81, 475 |
| MmeI | TCCRAC | 1 cut(s) | 242 |
| MnlI | CCTC | 3 cut(s) | 252, 442, 629 |
| Mox20I | TGGCCA | 1 cut(s) | 210 |
| MroI | TCCGGA | 1 cut(s) | 736 |
| MscI | TGGCCA | 1 cut(s) | 210 |
| MseI | TTAA | 1 cut(s) | 408 |
| MslI | CAYNNNNRTG | 3 cut(s) | 476, 492, 692 |
| Msp20I | TGGCCA | 1 cut(s) | 210 |
| MspI | CCGG | 4 cut(s) | 60, 158, 195, 737 |
| MspR9I | CCNGG | 2 cut(s) | 392, 594 |
| MvaI | CCWGG | 2 cut(s) | 392, 594 |
| MvnI | CGCG | 1 cut(s) | 756 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 29, 54, 127, 151, 428, 437, 449, 458 |
| NarI | GGCGCC | 1 cut(s) | 772 |
| NdeII | GATC | 1 cut(s) | 713 |
| NlaIII | CATG | 2 cut(s) | 647, 683 |
| NlaIV | GGNNCC | 5 cut(s) | 15, 64, 113, 137, 773 |
| PaeR7I | CTCGAG | 1 cut(s) | 380 |
| PagI | TCATGA | 1 cut(s) | 643 |
| PfeI | GAWTC | 3 cut(s) | 363, 497, 740 |
| PkrI | GCNGC | 1 cut(s) | 442 |
| PleI | GAGTC | 2 cut(s) | 81, 475 |
| PluTI | GGCGCC | 1 cut(s) | 775 |
| PmaCI | CACGTG | 1 cut(s) | 52 |
| PmlI | CACGTG | 1 cut(s) | 52 |
| PpsI | GAGTC | 2 cut(s) | 81, 475 |
| Ppu21I | YACGTR | 1 cut(s) | 52 |
| PpuMI | RGGWCCY | 2 cut(s) | 13, 111 |
| Psp124BI | GAGCTC | 1 cut(s) | 651 |
| Psp5II | RGGWCCY | 2 cut(s) | 13, 111 |
| Psp6I | CCWGG | 2 cut(s) | 390, 592 |
| PspCI | CACGTG | 1 cut(s) | 52 |
| PspGI | CCWGG | 2 cut(s) | 390, 592 |
| PspN4I | GGNNCC | 5 cut(s) | 15, 64, 113, 137, 773 |
| PspPI | GGNCC | 4 cut(s) | 13, 62, 111, 135 |
| PspPPI | RGGWCCY | 2 cut(s) | 13, 111 |
| PsuI | RGATCY | 1 cut(s) | 713 |
| RsaI | GTAC | 1 cut(s) | 509 |
| RsaNI | GTAC | 1 cut(s) | 508 |
| RseI | CAYNNNNRTG | 3 cut(s) | 476, 492, 692 |
| SacI | GAGCTC | 1 cut(s) | 651 |
| SaqAI | TTAA | 1 cut(s) | 408 |
| SatI | GCNGC | 1 cut(s) | 441 |
| Sau3AI | GATC | 1 cut(s) | 713 |
| Sau96I | GGNCC | 4 cut(s) | 13, 62, 111, 135 |
| SchI | GAGTC | 2 cut(s) | 81, 475 |
| ScrFI | CCNGG | 2 cut(s) | 392, 594 |
| SduI | GDGCHC | 2 cut(s) | 59, 651 |
| SfaNI | GCATC | 3 cut(s) | 139, 163, 355 |
| SfoI | GGCGCC | 1 cut(s) | 773 |
| Sfr274I | CTCGAG | 1 cut(s) | 380 |
| SinI | GGWCC | 4 cut(s) | 13, 62, 111, 135 |
| SlaI | CTCGAG | 1 cut(s) | 380 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 476, 492, 692 |
| SmlI | CTYRAG | 3 cut(s) | 350, 380, 417 |
| SmoI | CTYRAG | 3 cut(s) | 350, 380, 417 |
| SpeI | ACTAGT | 1 cut(s) | 374 |
| Sse9I | AATT | 4 cut(s) | 237, 278, 706, 745 |
| SsiI | CCGC | 3 cut(s) | 119, 340, 622 |
| SspDI | GGCGCC | 1 cut(s) | 771 |
| SspMI | CTAG | 3 cut(s) | 375, 387, 599 |
| SstI | GAGCTC | 1 cut(s) | 651 |
| StyD4I | CCNGG | 2 cut(s) | 390, 592 |
| TaaI | ACNGT | 1 cut(s) | 406 |
| TaiI | ACGT | 7 cut(s) | 29, 54, 78, 102, 127, 151, 399 |
| TaqI | TCGA | 3 cut(s) | 381, 555, 710 |
| TasI | AATT | 4 cut(s) | 237, 278, 706, 745 |
| TfiI | GAWTC | 3 cut(s) | 363, 497, 740 |
| Tru1I | TTAA | 1 cut(s) | 408 |
| Tru9I | TTAA | 1 cut(s) | 408 |
| TseI | GCWGC | 1 cut(s) | 440 |
| TspDTI | ATGAA | 5 cut(s) | 460, 533, 537, 632, 677 |
| TspGWI | ACGGA | 2 cut(s) | 566, 706 |
| VpaK11BI | GGWCC | 4 cut(s) | 13, 62, 111, 135 |
| XapI | RAATTY | 1 cut(s) | 237 |
| XhoI | CTCGAG | 1 cut(s) | 380 |
| XspI | CTAG | 3 cut(s) | 375, 387, 599 |