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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 309 |
| AccB1I | GGYRCC | 1 cut(s) | 371 |
| AciI | CCGC | 3 cut(s) | 274, 322, 351 |
| AclWI | GGATC | 2 cut(s) | 131, 469 |
| AcsI | RAATTY | 1 cut(s) | 617 |
| AcuI | CTGAAG | 1 cut(s) | 582 |
| AcyI | GRCGYC | 2 cut(s) | 372, 391 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 260, 261, 331 |
| AflIII | ACRYGT | 1 cut(s) | 444 |
| AgeI | ACCGGT | 1 cut(s) | 22 |
| AgsI | TTSAA | 4 cut(s) | 204, 230, 481, 616 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjiI | CACGTC | 1 cut(s) | 341 |
| AleI | CACNNNNGTG | 2 cut(s) | 399, 605 |
| AluBI | AGCT | 4 cut(s) | 40, 142, 164, 509 |
| AluI | AGCT | 4 cut(s) | 40, 142, 164, 509 |
| Alw26I | GTCTC | 2 cut(s) | 76, 525 |
| AlwI | GGATC | 2 cut(s) | 131, 469 |
| AoxI | GGCC | 2 cut(s) | 206, 358 |
| ApeKI | GCWGC | 1 cut(s) | 644 |
| ApoI | RAATTY | 1 cut(s) | 617 |
| AseI | ATTAAT | 1 cut(s) | 147 |
| AsiGI | ACCGGT | 1 cut(s) | 22 |
| AspLEI | GCGC | 2 cut(s) | 267, 374 |
| AspS9I | GGNCC | 1 cut(s) | 311 |
| AsuHPI | GGTGA | 2 cut(s) | 590, 592 |
| AvaII | GGWCC | 1 cut(s) | 311 |
| BanI | GGYRCC | 1 cut(s) | 371 |
| BbvI | GCAGC | 1 cut(s) | 631 |
| BccI | CCATC | 1 cut(s) | 569 |
| BceAI | ACGGC | 1 cut(s) | 345 |
| BcoDI | GTCTC | 2 cut(s) | 76, 525 |
| BfaI | CTAG | 1 cut(s) | 384 |
| BfmI | CTRYAG | 1 cut(s) | 645 |
| BfoI | RGCGCY | 1 cut(s) | 375 |
| BisI | GCNGC | 2 cut(s) | 351, 645 |
| BlsI | GCNGC | 2 cut(s) | 352, 646 |
| Bme18I | GGWCC | 1 cut(s) | 311 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgBI | CACGTC | 1 cut(s) | 341 |
| BmgT120I | GGNCC | 1 cut(s) | 311 |
| BmiI | GGNNCC | 3 cut(s) | 278, 349, 373 |
| BmsI | GCATC | 2 cut(s) | 574, 631 |
| BoxI | GACNNNNGTC | 1 cut(s) | 447 |
| Bsa29I | ATCGAT | 1 cut(s) | 454 |
| BsaBI | GATNNNNATC | 1 cut(s) | 460 |
| BsaHI | GRCGYC | 2 cut(s) | 372, 391 |
| BsaJI | CCNNGG | 2 cut(s) | 355, 361 |
| BsaWI | WCCGGW | 1 cut(s) | 22 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 260, 261, 331 |
| Bse118I | RCCGGY | 1 cut(s) | 22 |
| Bse1I | ACTGG | 1 cut(s) | 121 |
| Bse3DI | GCAATG | 2 cut(s) | 491, 496 |
| Bse8I | GATNNNNATC | 1 cut(s) | 460 |
| BseCI | ATCGAT | 1 cut(s) | 454 |
| BseDI | CCNNGG | 2 cut(s) | 355, 361 |
| BseJI | GATNNNNATC | 1 cut(s) | 460 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 260, 261, 331 |
| BseMI | GCAATG | 2 cut(s) | 491, 496 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseNI | ACTGG | 1 cut(s) | 121 |
| BseRI | GAGGAG | 2 cut(s) | 248, 370 |
| BseXI | GCAGC | 1 cut(s) | 631 |
| BshFI | GGCC | 2 cut(s) | 208, 360 |
| BshNI | GGYRCC | 1 cut(s) | 371 |
| BshTI | ACCGGT | 1 cut(s) | 22 |
| BshVI | ATCGAT | 1 cut(s) | 454 |
| BsiSI | CCGG | 1 cut(s) | 23 |
| BslFI | GGGAC | 2 cut(s) | 306, 402 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 260, 261, 331 |
| BsmAI | GTCTC | 2 cut(s) | 76, 525 |
| BsmFI | GGGAC | 2 cut(s) | 306, 402 |
| BsnI | GGCC | 2 cut(s) | 208, 360 |
| Bsp143I | GATC | 2 cut(s) | 123, 461 |
| BspACI | CCGC | 3 cut(s) | 274, 322, 351 |
| BspANI | GGCC | 2 cut(s) | 208, 360 |
| BspCNI | CTCAG | 1 cut(s) | 86 |
| BspDI | ATCGAT | 1 cut(s) | 454 |
| BspLI | GGNNCC | 3 cut(s) | 278, 349, 373 |
| BspMAI | CTGCAG | 1 cut(s) | 649 |
| BspPI | GGATC | 2 cut(s) | 131, 469 |
| BspT107I | GGYRCC | 1 cut(s) | 371 |
| BsrDI | GCAATG | 2 cut(s) | 491, 496 |
| BsrFI | RCCGGY | 1 cut(s) | 22 |
| BsrI | ACTGG | 1 cut(s) | 121 |
| BssAI | RCCGGY | 1 cut(s) | 22 |
| BssECI | CCNNGG | 2 cut(s) | 355, 361 |
| BssMI | GATC | 2 cut(s) | 123, 461 |
| BssNI | GRCGYC | 2 cut(s) | 372, 391 |
| BssT1I | CCWWGG | 1 cut(s) | 355 |
| BstACI | GRCGYC | 2 cut(s) | 372, 391 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 410 |
| BstC8I | GCNNGC | 1 cut(s) | 496 |
| BstDEI | CTNAG | 1 cut(s) | 73 |
| BstDSI | CCRYGG | 1 cut(s) | 361 |
| BstH2I | RGCGCY | 1 cut(s) | 375 |
| BstHHI | GCGC | 2 cut(s) | 267, 374 |
| BstKTI | GATC | 2 cut(s) | 126, 464 |
| BstMAI | GTCTC | 2 cut(s) | 76, 525 |
| BstMBI | GATC | 2 cut(s) | 123, 461 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 271, 410, 495, 557 |
| BstNSI | RCATGY | 1 cut(s) | 448 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 447 |
| BstSFI | CTRYAG | 1 cut(s) | 645 |
| BstV1I | GCAGC | 1 cut(s) | 631 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 362 |
| Bsu15I | ATCGAT | 1 cut(s) | 454 |
| BsuRI | GGCC | 2 cut(s) | 208, 360 |
| BsuTUI | ATCGAT | 1 cut(s) | 454 |
| BtgI | CCRYGG | 1 cut(s) | 361 |
| BtrI | CACGTC | 1 cut(s) | 341 |
| Cac8I | GCNNGC | 1 cut(s) | 496 |
| CfoI | GCGC | 2 cut(s) | 267, 374 |
| Cfr10I | RCCGGY | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 1 cut(s) | 311 |
| ClaI | ATCGAT | 1 cut(s) | 454 |
| CseI | GACGC | 1 cut(s) | 399 |
| CspAI | ACCGGT | 1 cut(s) | 22 |
| CviAII | CATG | 3 cut(s) | 173, 445, 545 |
| CviJI | RGCY | 8 cut(s) | 40, 142, 164, 208, 350, 360, 509, 551 |
| CviKI_1 | RGCY | 8 cut(s) | 40, 142, 164, 208, 350, 360, 509, 551 |
| DdeI | CTNAG | 1 cut(s) | 73 |
| DinI | GGCGCC | 1 cut(s) | 373 |
| DpnI | GATC | 2 cut(s) | 125, 463 |
| DpnII | GATC | 2 cut(s) | 123, 461 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 309 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 309 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 355 |
| Eco147I | AGGCCT | 1 cut(s) | 208 |
| Eco47I | GGWCC | 1 cut(s) | 311 |
| Eco57I | CTGAAG | 1 cut(s) | 582 |
| EcoT14I | CCWWGG | 1 cut(s) | 355 |
| EgeI | GGCGCC | 1 cut(s) | 373 |
| EheI | GGCGCC | 1 cut(s) | 373 |
| ErhI | CCWWGG | 1 cut(s) | 355 |
| FaeI | CATG | 3 cut(s) | 176, 448, 548 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 540, 572 |
| FaqI | GGGAC | 2 cut(s) | 306, 402 |
| FatI | CATG | 3 cut(s) | 172, 444, 544 |
| Fnu4HI | GCNGC | 2 cut(s) | 351, 645 |
| Fsp4HI | GCNGC | 2 cut(s) | 351, 645 |
| FspBI | CTAG | 1 cut(s) | 384 |
| GlaI | GCGC | 2 cut(s) | 266, 373 |
| GluI | GCNGC | 2 cut(s) | 351, 645 |
| HaeII | RGCGCY | 1 cut(s) | 375 |
| HaeIII | GGCC | 2 cut(s) | 208, 360 |
| HapII | CCGG | 1 cut(s) | 23 |
| HgaI | GACGC | 1 cut(s) | 399 |
| HhaI | GCGC | 2 cut(s) | 267, 374 |
| Hin1I | GRCGYC | 2 cut(s) | 372, 391 |
| Hin1II | CATG | 3 cut(s) | 176, 448, 548 |
| Hin6I | GCGC | 2 cut(s) | 265, 372 |
| HinP1I | GCGC | 2 cut(s) | 265, 372 |
| HpaII | CCGG | 1 cut(s) | 23 |
| HphI | GGTGA | 2 cut(s) | 590, 592 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 470, 610 |
| Hpy188III | TCNNGA | 1 cut(s) | 230 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 470, 610 |
| HpyAV | CCTTC | 2 cut(s) | 73, 329 |
| HpyCH4IV | ACGT | 3 cut(s) | 304, 340, 591 |
| HpyCH4V | TGCA | 8 cut(s) | 251, 404, 413, 489, 494, 514, 634, 647 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 271, 410, 495, 557 |
| HpyF3I | CTNAG | 1 cut(s) | 73 |
| HpySE526I | ACGT | 3 cut(s) | 304, 340, 591 |
| Hsp92I | GRCGYC | 2 cut(s) | 372, 391 |
| Hsp92II | CATG | 3 cut(s) | 176, 448, 548 |
| HspAI | GCGC | 2 cut(s) | 265, 372 |
| KasI | GGCGCC | 1 cut(s) | 371 |
| Kzo9I | GATC | 2 cut(s) | 123, 461 |
| LmnI | GCTCC | 1 cut(s) | 347 |
| LpnPI | CCDG | 3 cut(s) | 36, 81, 102 |
| Lsp1109I | GCAGC | 1 cut(s) | 631 |
| LweI | GCATC | 2 cut(s) | 574, 631 |
| MaeI | CTAG | 1 cut(s) | 384 |
| MaeII | ACGT | 3 cut(s) | 304, 340, 591 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 2 cut(s) | 125, 463 |
| MboI | GATC | 2 cut(s) | 123, 461 |
| MboII | GAAGA | 4 cut(s) | 575, 578, 581, 584 |
| MluCI | AATT | 9 cut(s) | 42, 144, 193, 199, 238, 419, 503, 617, 629 |
| Mly113I | GGCGCC | 1 cut(s) | 372 |
| MnlI | CCTC | 5 cut(s) | 226, 254, 391, 422, 426 |
| MseI | TTAA | 2 cut(s) | 147, 422 |
| MslI | CAYNNNNRTG | 4 cut(s) | 399, 456, 605, 639 |
| MspI | CCGG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 271, 410, 495, 557 |
| NarI | GGCGCC | 1 cut(s) | 372 |
| NdeII | GATC | 2 cut(s) | 123, 461 |
| NlaIII | CATG | 3 cut(s) | 176, 448, 548 |
| NlaIV | GGNNCC | 3 cut(s) | 278, 349, 373 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| NspI | RCATGY | 1 cut(s) | 448 |
| OliI | CACNNNNGTG | 2 cut(s) | 399, 605 |
| PceI | AGGCCT | 1 cut(s) | 208 |
| PciI | ACATGT | 1 cut(s) | 444 |
| PinAI | ACCGGT | 1 cut(s) | 22 |
| PkrI | GCNGC | 2 cut(s) | 352, 646 |
| PluTI | GGCGCC | 1 cut(s) | 375 |
| PscI | ACATGT | 1 cut(s) | 444 |
| PshAI | GACNNNNGTC | 1 cut(s) | 447 |
| PshBI | ATTAAT | 1 cut(s) | 147 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| PspN4I | GGNNCC | 3 cut(s) | 278, 349, 373 |
| PspPI | GGNCC | 1 cut(s) | 311 |
| PstI | CTGCAG | 1 cut(s) | 649 |
| RseI | CAYNNNNRTG | 4 cut(s) | 399, 456, 605, 639 |
| SaqAI | TTAA | 2 cut(s) | 147, 422 |
| SatI | GCNGC | 2 cut(s) | 351, 645 |
| Sau3AI | GATC | 2 cut(s) | 123, 461 |
| Sau96I | GGNCC | 1 cut(s) | 311 |
| SetI | ASST | 9 cut(s) | 42, 65, 144, 166, 307, 343, 418, 511, 594 |
| SfaNI | GCATC | 2 cut(s) | 574, 631 |
| SfcI | CTRYAG | 1 cut(s) | 645 |
| SfoI | GGCGCC | 1 cut(s) | 373 |
| SinI | GGWCC | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 399, 456, 605, 639 |
| Sse9I | AATT | 9 cut(s) | 42, 144, 193, 199, 238, 419, 503, 617, 629 |
| SseBI | AGGCCT | 1 cut(s) | 208 |
| SsiI | CCGC | 3 cut(s) | 274, 322, 351 |
| SspDI | GGCGCC | 1 cut(s) | 371 |
| SspI | AATATT | 1 cut(s) | 81 |
| SspMI | CTAG | 1 cut(s) | 384 |
| StuI | AGGCCT | 1 cut(s) | 208 |
| StyI | CCWWGG | 1 cut(s) | 355 |
| TaiI | ACGT | 3 cut(s) | 307, 343, 594 |
| TaqI | TCGA | 2 cut(s) | 100, 454 |
| TasI | AATT | 9 cut(s) | 42, 144, 193, 199, 238, 419, 503, 617, 629 |
| TauI | GCSGC | 1 cut(s) | 353 |
| Tru1I | TTAA | 2 cut(s) | 147, 422 |
| Tru9I | TTAA | 2 cut(s) | 147, 422 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 644 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 2 cut(s) | 125, 561 |
| TspGWI | ACGGA | 1 cut(s) | 136 |
| VpaK11BI | GGWCC | 1 cut(s) | 311 |
| VspI | ATTAAT | 1 cut(s) | 147 |
| XapI | RAATTY | 1 cut(s) | 617 |
| XceI | RCATGY | 1 cut(s) | 448 |
| XspI | CTAG | 1 cut(s) | 384 |