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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 303 |
| AatII | GACGTC | 1 cut(s) | 301 |
| AccII | CGCG | 3 cut(s) | 340, 492, 582 |
| AciI | CCGC | 4 cut(s) | 253, 490, 492, 580 |
| AclWI | GGATC | 3 cut(s) | 75, 144, 520 |
| AcoI | YGGCCR | 1 cut(s) | 424 |
| AcuI | CTGAAG | 2 cut(s) | 92, 204 |
| AcyI | GRCGYC | 1 cut(s) | 298 |
| AfaI | GTAC | 2 cut(s) | 251, 530 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 259 |
| AgsI | TTSAA | 5 cut(s) | 109, 127, 161, 322, 664 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 285, 317 |
| AluBI | AGCT | 6 cut(s) | 188, 545, 589, 595, 602, 635 |
| AluI | AGCT | 6 cut(s) | 188, 545, 589, 595, 602, 635 |
| Alw26I | GTCTC | 2 cut(s) | 669, 683 |
| AlwI | GGATC | 3 cut(s) | 75, 144, 520 |
| Ama87I | CYCGRG | 2 cut(s) | 197, 471 |
| AoxI | GGCC | 6 cut(s) | 346, 355, 379, 388, 406, 424 |
| AspS9I | GGNCC | 3 cut(s) | 23, 305, 328 |
| AsuC2I | CCSGG | 2 cut(s) | 65, 221 |
| AsuNHI | GCTAGC | 1 cut(s) | 545 |
| AvaI | CYCGRG | 2 cut(s) | 197, 471 |
| AvaII | GGWCC | 3 cut(s) | 23, 305, 328 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 233, 266 |
| BbsI | GAAGAC | 1 cut(s) | 38 |
| BccI | CCATC | 1 cut(s) | 617 |
| BclI | TGATCA | 1 cut(s) | 562 |
| BcnI | CCSGG | 2 cut(s) | 65, 221 |
| BcoDI | GTCTC | 2 cut(s) | 669, 683 |
| BfaI | CTAG | 2 cut(s) | 546, 596 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 354, 387, 396 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 221 |
| Bme18I | GGWCC | 3 cut(s) | 23, 305, 328 |
| BmeT110I | CYCGRG | 2 cut(s) | 197, 471 |
| BmgT120I | GGNCC | 3 cut(s) | 23, 305, 328 |
| BmiI | GGNNCC | 4 cut(s) | 25, 98, 225, 269 |
| BmrFI | CCNGG | 2 cut(s) | 65, 221 |
| BmsI | GCATC | 1 cut(s) | 344 |
| BmtI | GCTAGC | 1 cut(s) | 549 |
| BpiI | GAAGAC | 1 cut(s) | 38 |
| Bpu10I | CCTNAGC | 1 cut(s) | 456 |
| BpuEI | CTTGAG | 1 cut(s) | 611 |
| BpuMI | CCSGG | 2 cut(s) | 65, 221 |
| BsaBI | GATNNNNATC | 2 cut(s) | 511, 642 |
| BsaHI | GRCGYC | 1 cut(s) | 298 |
| BsaJI | CCNNGG | 5 cut(s) | 349, 358, 391, 409, 490 |
| BsaWI | WCCGGW | 1 cut(s) | 694 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 259 |
| Bse3DI | GCAATG | 2 cut(s) | 262, 535 |
| Bse8I | GATNNNNATC | 2 cut(s) | 511, 642 |
| BseDI | CCNNGG | 5 cut(s) | 349, 358, 391, 409, 490 |
| BseJI | GATNNNNATC | 2 cut(s) | 511, 642 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 259 |
| BseMI | GCAATG | 2 cut(s) | 262, 535 |
| BseRI | GAGGAG | 2 cut(s) | 275, 408 |
| Bsh1236I | CGCG | 3 cut(s) | 340, 492, 582 |
| BshFI | GGCC | 6 cut(s) | 348, 357, 381, 390, 408, 426 |
| BsiHKCI | CYCGRG | 2 cut(s) | 197, 471 |
| BsiSI | CCGG | 3 cut(s) | 65, 221, 695 |
| BslFI | GGGAC | 2 cut(s) | 382, 567 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 259 |
| BsmAI | GTCTC | 2 cut(s) | 669, 683 |
| BsmFI | GGGAC | 2 cut(s) | 382, 567 |
| BsnI | GGCC | 6 cut(s) | 348, 357, 381, 390, 408, 426 |
| BsoBI | CYCGRG | 2 cut(s) | 197, 471 |
| Bsp143I | GATC | 4 cut(s) | 67, 149, 512, 562 |
| Bsp19I | CCATGG | 1 cut(s) | 349 |
| BspACI | CCGC | 4 cut(s) | 253, 490, 492, 580 |
| BspANI | GGCC | 6 cut(s) | 348, 357, 381, 390, 408, 426 |
| BspFNI | CGCG | 3 cut(s) | 340, 492, 582 |
| BspLI | GGNNCC | 4 cut(s) | 25, 98, 225, 269 |
| BspOI | GCTAGC | 1 cut(s) | 549 |
| BspPI | GGATC | 3 cut(s) | 75, 144, 520 |
| BsrDI | GCAATG | 2 cut(s) | 262, 535 |
| BssECI | CCNNGG | 5 cut(s) | 349, 358, 391, 409, 490 |
| BssMI | GATC | 4 cut(s) | 67, 149, 512, 562 |
| BssNI | GRCGYC | 1 cut(s) | 298 |
| BssT1I | CCWWGG | 1 cut(s) | 349 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 167 |
| Bst6I | CTCTTC | 1 cut(s) | 379 |
| BstACI | GRCGYC | 1 cut(s) | 298 |
| BstC8I | GCNNGC | 1 cut(s) | 547 |
| BstDEI | CTNAG | 1 cut(s) | 456 |
| BstDSI | CCRYGG | 2 cut(s) | 349, 490 |
| BstEII | GGTNACC | 1 cut(s) | 413 |
| BstFNI | CGCG | 3 cut(s) | 340, 492, 582 |
| BstKTI | GATC | 4 cut(s) | 70, 152, 515, 565 |
| BstMAI | GTCTC | 2 cut(s) | 669, 683 |
| BstMBI | GATC | 4 cut(s) | 67, 149, 512, 562 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 354, 387, 396, 405, 437, 498, 546 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstPI | GGTNACC | 1 cut(s) | 413 |
| BstSCI | CCNGG | 2 cut(s) | 63, 219 |
| BstUI | CGCG | 3 cut(s) | 340, 492, 582 |
| BstV2I | GAAGAC | 1 cut(s) | 38 |
| BstX2I | RGATCY | 1 cut(s) | 67 |
| BstYI | RGATCY | 1 cut(s) | 67 |
| BsuRI | GGCC | 6 cut(s) | 348, 357, 381, 390, 408, 426 |
| BtgI | CCRYGG | 2 cut(s) | 349, 490 |
| BtgZI | GCGATG | 1 cut(s) | 321 |
| Cac8I | GCNNGC | 1 cut(s) | 547 |
| Cfr13I | GGNCC | 3 cut(s) | 23, 305, 328 |
| Cfr42I | CCGCGG | 1 cut(s) | 493 |
| Csp6I | GTAC | 2 cut(s) | 250, 529 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 490, 525 |
| CviAII | CATG | 4 cut(s) | 28, 154, 193, 350 |
| CviQI | GTAC | 2 cut(s) | 250, 529 |
| DdeI | CTNAG | 1 cut(s) | 456 |
| DpnI | GATC | 4 cut(s) | 69, 151, 514, 564 |
| DpnII | GATC | 4 cut(s) | 67, 149, 512, 562 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 303 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 303 |
| EaeI | YGGCCR | 1 cut(s) | 424 |
| Eam1104I | CTCTTC | 1 cut(s) | 379 |
| EarI | CTCTTC | 1 cut(s) | 379 |
| Eco130I | CCWWGG | 1 cut(s) | 349 |
| Eco47I | GGWCC | 3 cut(s) | 23, 305, 328 |
| Eco57I | CTGAAG | 2 cut(s) | 92, 204 |
| Eco88I | CYCGRG | 2 cut(s) | 197, 471 |
| Eco91I | GGTNACC | 1 cut(s) | 413 |
| EcoO109I | RGGNCCY | 1 cut(s) | 23 |
| EcoO65I | GGTNACC | 1 cut(s) | 413 |
| EcoT14I | CCWWGG | 1 cut(s) | 349 |
| ErhI | CCWWGG | 1 cut(s) | 349 |
| FaeI | CATG | 4 cut(s) | 31, 157, 196, 353 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 285, 317 |
| FaqI | GGGAC | 2 cut(s) | 382, 567 |
| FatI | CATG | 4 cut(s) | 27, 153, 192, 349 |
| FbaI | TGATCA | 1 cut(s) | 562 |
| FspBI | CTAG | 2 cut(s) | 546, 596 |
| HaeIII | GGCC | 6 cut(s) | 348, 357, 381, 390, 408, 426 |
| HapII | CCGG | 3 cut(s) | 65, 221, 695 |
| Hin1I | GRCGYC | 1 cut(s) | 298 |
| Hin1II | CATG | 4 cut(s) | 31, 157, 196, 353 |
| HindIII | AAGCTT | 2 cut(s) | 587, 600 |
| HinfI | GANTC | 2 cut(s) | 235, 677 |
| HpaII | CCGG | 3 cut(s) | 65, 221, 695 |
| Hpy166II | GTNNAC | 1 cut(s) | 170 |
| Hpy188I | TCNGA | 2 cut(s) | 72, 133 |
| Hpy188III | TCNNGA | 3 cut(s) | 199, 322, 473 |
| Hpy8I | GTNNAC | 1 cut(s) | 170 |
| HpyAV | CCTTC | 5 cut(s) | 67, 226, 287, 319, 371 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 167 |
| HpyCH4IV | ACGT | 1 cut(s) | 298 |
| HpyCH4V | TGCA | 6 cut(s) | 50, 119, 230, 242, 501, 540 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 354, 387, 396, 405, 437, 498, 546 |
| HpyF3I | CTNAG | 1 cut(s) | 456 |
| HpySE526I | ACGT | 1 cut(s) | 298 |
| Hsp92I | GRCGYC | 1 cut(s) | 298 |
| Hsp92II | CATG | 4 cut(s) | 31, 157, 196, 353 |
| Ksp22I | TGATCA | 1 cut(s) | 562 |
| KspI | CCGCGG | 1 cut(s) | 493 |
| Kzo9I | GATC | 4 cut(s) | 67, 149, 512, 562 |
| LmnI | GCTCC | 1 cut(s) | 66 |
| LpnPI | CCDG | 4 cut(s) | 71, 78, 234, 240 |
| LweI | GCATC | 1 cut(s) | 344 |
| MaeI | CTAG | 2 cut(s) | 546, 596 |
| MaeII | ACGT | 1 cut(s) | 298 |
| MaeIII | GTNAC | 2 cut(s) | 178, 413 |
| MalI | GATC | 4 cut(s) | 69, 151, 514, 564 |
| MboI | GATC | 4 cut(s) | 67, 149, 512, 562 |
| MboII | GAAGA | 4 cut(s) | 43, 297, 396, 632 |
| MflI | RGATCY | 1 cut(s) | 67 |
| MluCI | AATT | 2 cut(s) | 496, 666 |
| MlyI | GAGTC | 1 cut(s) | 671 |
| MspA1I | CMGCKG | 1 cut(s) | 492 |
| MspI | CCGG | 3 cut(s) | 65, 221, 695 |
| MspR9I | CCNGG | 2 cut(s) | 65, 221 |
| MvnI | CGCG | 3 cut(s) | 340, 492, 582 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 354, 387, 396, 405, 437, 498, 546 |
| NciI | CCSGG | 2 cut(s) | 65, 221 |
| NcoI | CCATGG | 1 cut(s) | 349 |
| NdeII | GATC | 4 cut(s) | 67, 149, 512, 562 |
| NheI | GCTAGC | 1 cut(s) | 545 |
| NlaIII | CATG | 4 cut(s) | 31, 157, 196, 353 |
| NlaIV | GGNNCC | 4 cut(s) | 25, 98, 225, 269 |
| NmeAIII | GCCGAG | 4 cut(s) | 383, 416, 434, 452 |
| NmuCI | GTSAC | 1 cut(s) | 178 |
| NspI | RCATGY | 1 cut(s) | 196 |
| PaeR7I | CTCGAG | 2 cut(s) | 197, 471 |
| PfeI | GAWTC | 1 cut(s) | 235 |
| PfoI | TCCNGGA | 1 cut(s) | 63 |
| PleI | GAGTC | 1 cut(s) | 671 |
| PpsI | GAGTC | 1 cut(s) | 671 |
| PpuMI | RGGWCCY | 1 cut(s) | 23 |
| Psp5II | RGGWCCY | 1 cut(s) | 23 |
| PspEI | GGTNACC | 1 cut(s) | 413 |
| PspN4I | GGNNCC | 4 cut(s) | 25, 98, 225, 269 |
| PspPI | GGNCC | 3 cut(s) | 23, 305, 328 |
| PspPPI | RGGWCCY | 1 cut(s) | 23 |
| PsuI | RGATCY | 1 cut(s) | 67 |
| RsaI | GTAC | 2 cut(s) | 251, 530 |
| RsaNI | GTAC | 2 cut(s) | 250, 529 |
| SacII | CCGCGG | 1 cut(s) | 493 |
| Sau3AI | GATC | 4 cut(s) | 67, 149, 512, 562 |
| Sau96I | GGNCC | 3 cut(s) | 23, 305, 328 |
| SchI | GAGTC | 1 cut(s) | 671 |
| ScrFI | CCNGG | 2 cut(s) | 65, 221 |
| SfaNI | GCATC | 1 cut(s) | 344 |
| SfiI | GGCCNNNNNGGCC | 2 cut(s) | 354, 387 |
| Sfr274I | CTCGAG | 2 cut(s) | 197, 471 |
| Sfr303I | CCGCGG | 1 cut(s) | 493 |
| SgrBI | CCGCGG | 1 cut(s) | 493 |
| SinI | GGWCC | 3 cut(s) | 23, 305, 328 |
| SlaI | CTCGAG | 2 cut(s) | 197, 471 |
| SmlI | CTYRAG | 3 cut(s) | 197, 471, 590 |
| SmoI | CTYRAG | 3 cut(s) | 197, 471, 590 |
| Sse9I | AATT | 2 cut(s) | 496, 666 |
| SsiI | CCGC | 4 cut(s) | 253, 490, 492, 580 |
| SspMI | CTAG | 2 cut(s) | 546, 596 |
| StyD4I | CCNGG | 2 cut(s) | 63, 219 |
| StyI | CCWWGG | 1 cut(s) | 349 |
| TaaI | ACNGT | 2 cut(s) | 115, 167 |
| TaiI | ACGT | 1 cut(s) | 301 |
| TaqI | TCGA | 4 cut(s) | 148, 198, 472, 680 |
| TasI | AATT | 2 cut(s) | 496, 666 |
| TfiI | GAWTC | 1 cut(s) | 235 |
| TseFI | GTSAC | 1 cut(s) | 178 |
| Tsp45I | GTSAC | 1 cut(s) | 178 |
| TspDTI | ATGAA | 4 cut(s) | 27, 44, 480, 627 |
| VpaK11BI | GGWCC | 3 cut(s) | 23, 305, 328 |
| XceI | RCATGY | 1 cut(s) | 196 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 338 |
| XhoI | CTCGAG | 2 cut(s) | 197, 471 |
| XspI | CTAG | 2 cut(s) | 546, 596 |
| ZraI | GACGTC | 1 cut(s) | 299 |