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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 435 |
| AccB1I | GGYRCC | 1 cut(s) | 548 |
| AciI | CCGC | 1 cut(s) | 195 |
| AcoI | YGGCCR | 1 cut(s) | 535 |
| AcsI | RAATTY | 2 cut(s) | 122, 134 |
| AcyI | GRCGYC | 1 cut(s) | 549 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 478 |
| AgsI | TTSAA | 2 cut(s) | 82, 586 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 29, 61 |
| AluBI | AGCT | 3 cut(s) | 268, 278, 450 |
| AluI | AGCT | 3 cut(s) | 268, 278, 450 |
| Alw21I | GWGCWC | 1 cut(s) | 270 |
| Alw26I | GTCTC | 1 cut(s) | 33 |
| AoxI | GGCC | 2 cut(s) | 332, 535 |
| ApoI | RAATTY | 2 cut(s) | 122, 134 |
| AspLEI | GCGC | 1 cut(s) | 551 |
| AspS9I | GGNCC | 2 cut(s) | 333, 437 |
| AvaII | GGWCC | 1 cut(s) | 437 |
| AxyI | CCTNAGG | 1 cut(s) | 381 |
| BaeGI | GKGCMC | 1 cut(s) | 379 |
| BalI | TGGCCA | 1 cut(s) | 537 |
| BanI | GGYRCC | 1 cut(s) | 548 |
| BanII | GRGCYC | 1 cut(s) | 270 |
| Bbv12I | GWGCWC | 1 cut(s) | 270 |
| BccI | CCATC | 2 cut(s) | 202, 576 |
| BcoDI | GTCTC | 1 cut(s) | 33 |
| BfaI | CTAG | 2 cut(s) | 414, 447 |
| BfoI | RGCGCY | 1 cut(s) | 552 |
| Bme18I | GGWCC | 1 cut(s) | 437 |
| BmgT120I | GGNCC | 2 cut(s) | 333, 437 |
| BmiI | GGNNCC | 2 cut(s) | 491, 550 |
| Bsa29I | ATCGAT | 1 cut(s) | 231 |
| BsaHI | GRCGYC | 1 cut(s) | 549 |
| BsaI | GGTCTC | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 1 cut(s) | 336 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 478 |
| Bse21I | CCTNAGG | 1 cut(s) | 381 |
| Bse3DI | GCAATG | 1 cut(s) | 532 |
| BseCI | ATCGAT | 1 cut(s) | 231 |
| BseDI | CCNNGG | 1 cut(s) | 336 |
| BseGI | GGATG | 2 cut(s) | 306, 568 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 478 |
| BseMI | GCAATG | 1 cut(s) | 532 |
| BseSI | GKGCMC | 1 cut(s) | 379 |
| BshFI | GGCC | 2 cut(s) | 334, 537 |
| BshNI | GGYRCC | 1 cut(s) | 548 |
| BshVI | ATCGAT | 1 cut(s) | 231 |
| BsiHKAI | GWGCWC | 1 cut(s) | 270 |
| BslFI | GGGAC | 1 cut(s) | 431 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 478 |
| BsmAI | GTCTC | 1 cut(s) | 33 |
| BsmFI | GGGAC | 1 cut(s) | 431 |
| BsnI | GGCC | 2 cut(s) | 334, 537 |
| Bso31I | GGTCTC | 1 cut(s) | 33 |
| Bsp1286I | GDGCHC | 2 cut(s) | 270, 379 |
| Bsp143I | GATC | 1 cut(s) | 249 |
| BspACI | CCGC | 1 cut(s) | 195 |
| BspANI | GGCC | 2 cut(s) | 334, 537 |
| BspDI | ATCGAT | 1 cut(s) | 231 |
| BspHI | TCATGA | 1 cut(s) | 262 |
| BspLI | GGNNCC | 2 cut(s) | 491, 550 |
| BspT107I | GGYRCC | 1 cut(s) | 548 |
| BspTNI | GGTCTC | 1 cut(s) | 33 |
| BsrDI | GCAATG | 1 cut(s) | 532 |
| BssECI | CCNNGG | 1 cut(s) | 336 |
| BssMI | GATC | 1 cut(s) | 249 |
| BssNI | GRCGYC | 1 cut(s) | 549 |
| Bst6I | CTCTTC | 2 cut(s) | 490, 506 |
| BstACI | GRCGYC | 1 cut(s) | 549 |
| BstDEI | CTNAG | 2 cut(s) | 216, 381 |
| BstDSI | CCRYGG | 1 cut(s) | 336 |
| BstF5I | GGATG | 2 cut(s) | 306, 568 |
| BstH2I | RGCGCY | 1 cut(s) | 552 |
| BstHHI | GCGC | 1 cut(s) | 551 |
| BstKTI | GATC | 1 cut(s) | 252 |
| BstMAI | GTCTC | 1 cut(s) | 33 |
| BstMBI | GATC | 1 cut(s) | 249 |
| BstSLI | GKGCMC | 1 cut(s) | 379 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 545 |
| Bsu15I | ATCGAT | 1 cut(s) | 231 |
| Bsu36I | CCTNAGG | 1 cut(s) | 381 |
| BsuRI | GGCC | 2 cut(s) | 334, 537 |
| BsuTUI | ATCGAT | 1 cut(s) | 231 |
| BtgI | CCRYGG | 1 cut(s) | 336 |
| BtgZI | GCGATG | 1 cut(s) | 176 |
| BtsCI | GGATG | 2 cut(s) | 306, 568 |
| CciI | TCATGA | 1 cut(s) | 262 |
| CfoI | GCGC | 1 cut(s) | 551 |
| Cfr13I | GGNCC | 2 cut(s) | 333, 437 |
| ClaI | ATCGAT | 1 cut(s) | 231 |
| CviAII | CATG | 3 cut(s) | 263, 299, 539 |
| CviJI | RGCY | 9 cut(s) | 21, 268, 278, 334, 450, 537, 567, 581, 592 |
| CviKI_1 | RGCY | 9 cut(s) | 21, 268, 278, 334, 450, 537, 567, 581, 592 |
| DdeI | CTNAG | 2 cut(s) | 216, 381 |
| DinI | GGCGCC | 1 cut(s) | 550 |
| DpnI | GATC | 1 cut(s) | 251 |
| DpnII | GATC | 1 cut(s) | 249 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 435 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 435 |
| EaeI | YGGCCR | 1 cut(s) | 535 |
| Eam1104I | CTCTTC | 2 cut(s) | 490, 506 |
| EarI | CTCTTC | 2 cut(s) | 490, 506 |
| Ecl136II | GAGCTC | 1 cut(s) | 268 |
| Eco24I | GRGCYC | 1 cut(s) | 270 |
| Eco31I | GGTCTC | 1 cut(s) | 33 |
| Eco47I | GGWCC | 1 cut(s) | 437 |
| Eco53kI | GAGCTC | 1 cut(s) | 268 |
| Eco81I | CCTNAGG | 1 cut(s) | 381 |
| EcoICRI | GAGCTC | 1 cut(s) | 268 |
| EcoT38I | GRGCYC | 1 cut(s) | 270 |
| EgeI | GGCGCC | 1 cut(s) | 550 |
| EheI | GGCGCC | 1 cut(s) | 550 |
| FaeI | CATG | 3 cut(s) | 266, 302, 542 |
| FaqI | GGGAC | 1 cut(s) | 431 |
| FatI | CATG | 3 cut(s) | 262, 298, 538 |
| FauI | CCCGC | 1 cut(s) | 202 |
| FauNDI | CATATG | 1 cut(s) | 157 |
| FokI | GGATG | 2 cut(s) | 293, 555 |
| FriOI | GRGCYC | 1 cut(s) | 270 |
| FspBI | CTAG | 2 cut(s) | 414, 447 |
| GlaI | GCGC | 1 cut(s) | 550 |
| HaeII | RGCGCY | 1 cut(s) | 552 |
| HaeIII | GGCC | 2 cut(s) | 334, 537 |
| HhaI | GCGC | 1 cut(s) | 551 |
| Hin1I | GRCGYC | 1 cut(s) | 549 |
| Hin1II | CATG | 3 cut(s) | 266, 302, 542 |
| Hin6I | GCGC | 1 cut(s) | 549 |
| HinP1I | GCGC | 1 cut(s) | 549 |
| HinfI | GANTC | 2 cut(s) | 178, 228 |
| Hpy188I | TCNGA | 1 cut(s) | 357 |
| Hpy188III | TCNNGA | 2 cut(s) | 92, 263 |
| HpyAV | CCTTC | 3 cut(s) | 11, 199, 515 |
| HpyCH4IV | ACGT | 2 cut(s) | 53, 430 |
| HpyF3I | CTNAG | 2 cut(s) | 216, 381 |
| HpySE526I | ACGT | 2 cut(s) | 53, 430 |
| Hsp92I | GRCGYC | 1 cut(s) | 549 |
| Hsp92II | CATG | 3 cut(s) | 266, 302, 542 |
| HspAI | GCGC | 1 cut(s) | 549 |
| KasI | GGCGCC | 1 cut(s) | 548 |
| Kzo9I | GATC | 1 cut(s) | 249 |
| LpnPI | CCDG | 2 cut(s) | 27, 519 |
| MaeI | CTAG | 2 cut(s) | 414, 447 |
| MaeII | ACGT | 2 cut(s) | 53, 430 |
| MaeIII | GTNAC | 2 cut(s) | 151, 235 |
| MalI | GATC | 1 cut(s) | 251 |
| MboI | GATC | 1 cut(s) | 249 |
| MboII | GAAGA | 4 cut(s) | 398, 473, 507, 523 |
| MhlI | GDGCHC | 2 cut(s) | 270, 379 |
| MlsI | TGGCCA | 1 cut(s) | 537 |
| MluCI | AATT | 4 cut(s) | 122, 134, 325, 364 |
| MluNI | TGGCCA | 1 cut(s) | 537 |
| Mly113I | GGCGCC | 1 cut(s) | 549 |
| MlyI | GAGTC | 1 cut(s) | 172 |
| MnlI | CCTC | 8 cut(s) | 168, 208, 324, 451, 491, 511, 541, 571 |
| Mox20I | TGGCCA | 1 cut(s) | 537 |
| MscI | TGGCCA | 1 cut(s) | 537 |
| MseI | TTAA | 4 cut(s) | 120, 128, 561, 595 |
| MslI | CAYNNNNRTG | 3 cut(s) | 311, 543, 573 |
| Msp20I | TGGCCA | 1 cut(s) | 537 |
| NarI | GGCGCC | 1 cut(s) | 549 |
| NdeI | CATATG | 1 cut(s) | 157 |
| NdeII | GATC | 1 cut(s) | 249 |
| NlaIII | CATG | 3 cut(s) | 266, 302, 542 |
| NlaIV | GGNNCC | 2 cut(s) | 491, 550 |
| NmuCI | GTSAC | 1 cut(s) | 151 |
| PagI | TCATGA | 1 cut(s) | 262 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 397 |
| PfeI | GAWTC | 1 cut(s) | 228 |
| PleI | GAGTC | 1 cut(s) | 172 |
| PluTI | GGCGCC | 1 cut(s) | 552 |
| PpsI | GAGTC | 1 cut(s) | 172 |
| Psp124BI | GAGCTC | 1 cut(s) | 270 |
| PspN4I | GGNNCC | 2 cut(s) | 491, 550 |
| PspPI | GGNCC | 2 cut(s) | 333, 437 |
| RseI | CAYNNNNRTG | 3 cut(s) | 311, 543, 573 |
| SacI | GAGCTC | 1 cut(s) | 270 |
| SaqAI | TTAA | 4 cut(s) | 120, 128, 561, 595 |
| Sau3AI | GATC | 1 cut(s) | 249 |
| Sau96I | GGNCC | 2 cut(s) | 333, 437 |
| SchI | GAGTC | 1 cut(s) | 172 |
| SduI | GDGCHC | 2 cut(s) | 270, 379 |
| SetI | ASST | 8 cut(s) | 56, 191, 260, 270, 280, 433, 452, 502 |
| SfoI | GGCGCC | 1 cut(s) | 550 |
| SinI | GGWCC | 1 cut(s) | 437 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 311, 543, 573 |
| Sse9I | AATT | 4 cut(s) | 122, 134, 325, 364 |
| SsiI | CCGC | 1 cut(s) | 195 |
| SspDI | GGCGCC | 1 cut(s) | 548 |
| SspMI | CTAG | 2 cut(s) | 414, 447 |
| SstI | GAGCTC | 1 cut(s) | 270 |
| TaiI | ACGT | 2 cut(s) | 56, 433 |
| TaqI | TCGA | 5 cut(s) | 35, 104, 226, 231, 329 |
| TasI | AATT | 4 cut(s) | 122, 134, 325, 364 |
| TfiI | GAWTC | 1 cut(s) | 228 |
| Tru1I | TTAA | 4 cut(s) | 120, 128, 561, 595 |
| Tru9I | TTAA | 4 cut(s) | 120, 128, 561, 595 |
| TseFI | GTSAC | 1 cut(s) | 151 |
| Tsp45I | GTSAC | 1 cut(s) | 151 |
| TspDTI | ATGAA | 3 cut(s) | 17, 251, 296 |
| TspGWI | ACGGA | 1 cut(s) | 502 |
| VpaK11BI | GGWCC | 1 cut(s) | 437 |
| XapI | RAATTY | 2 cut(s) | 122, 134 |
| XspI | CTAG | 2 cut(s) | 414, 447 |