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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 618 |
| AccI | GTMKAC | 1 cut(s) | 647 |
| AccIII | TCCGGA | 1 cut(s) | 583 |
| AciI | CCGC | 2 cut(s) | 295, 697 |
| AclWI | GGATC | 2 cut(s) | 555, 659 |
| AcsI | RAATTY | 1 cut(s) | 362 |
| AcuI | CTGAAG | 1 cut(s) | 563 |
| AcyI | GRCGYC | 1 cut(s) | 619 |
| AfaI | GTAC | 1 cut(s) | 182 |
| AgsI | TTSAA | 1 cut(s) | 310 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AjnI | CCWGG | 1 cut(s) | 63 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 222, 254 |
| AluBI | AGCT | 4 cut(s) | 89, 95, 496, 506 |
| AluI | AGCT | 4 cut(s) | 89, 95, 496, 506 |
| Alw21I | GWGCWC | 1 cut(s) | 498 |
| Alw26I | GTCTC | 2 cut(s) | 226, 430 |
| AlwI | GGATC | 2 cut(s) | 555, 659 |
| Aor13HI | TCCGGA | 1 cut(s) | 583 |
| ApeKI | GCWGC | 1 cut(s) | 113 |
| ApoI | RAATTY | 1 cut(s) | 362 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 339 |
| AspLEI | GCGC | 1 cut(s) | 621 |
| BanI | GGYRCC | 1 cut(s) | 618 |
| BanII | GRGCYC | 1 cut(s) | 498 |
| BbsI | GAAGAC | 2 cut(s) | 207, 410 |
| Bbv12I | GWGCWC | 1 cut(s) | 498 |
| BbvI | GCAGC | 1 cut(s) | 125 |
| BccI | CCATC | 3 cut(s) | 149, 276, 430 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 449, 483 |
| BciT130I | CCWGG | 1 cut(s) | 65 |
| BcoDI | GTCTC | 2 cut(s) | 226, 430 |
| BfaI | CTAG | 2 cut(s) | 207, 272 |
| BfoI | RGCGCY | 1 cut(s) | 622 |
| BisI | GCNGC | 1 cut(s) | 114 |
| BlsI | GCNGC | 1 cut(s) | 115 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmiI | GGNNCC | 1 cut(s) | 620 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BmsI | GCATC | 1 cut(s) | 376 |
| BpiI | GAAGAC | 2 cut(s) | 207, 410 |
| BpmI | CTGGAG | 1 cut(s) | 161 |
| BpuEI | CTTGAG | 1 cut(s) | 75 |
| Bsa29I | ATCGAT | 1 cut(s) | 459 |
| BsaHI | GRCGYC | 1 cut(s) | 619 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 1 cut(s) | 564 |
| BsaWI | WCCGGW | 1 cut(s) | 583 |
| Bse1I | ACTGG | 2 cut(s) | 49, 178 |
| BseAI | TCCGGA | 1 cut(s) | 583 |
| BseBI | CCWGG | 1 cut(s) | 65 |
| BseCI | ATCGAT | 1 cut(s) | 459 |
| BseDI | CCNNGG | 1 cut(s) | 564 |
| BseGI | GGATG | 2 cut(s) | 144, 172 |
| BseMII | CTCAG | 1 cut(s) | 632 |
| BseNI | ACTGG | 2 cut(s) | 49, 178 |
| BseXI | GCAGC | 1 cut(s) | 125 |
| BshNI | GGYRCC | 1 cut(s) | 618 |
| BshVI | ATCGAT | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 1 cut(s) | 498 |
| BsiSI | CCGG | 1 cut(s) | 584 |
| BsmAI | GTCTC | 2 cut(s) | 226, 430 |
| BsmBI | CGTCTC | 1 cut(s) | 430 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 1 cut(s) | 498 |
| Bsp13I | TCCGGA | 1 cut(s) | 583 |
| Bsp143I | GATC | 3 cut(s) | 378, 560, 664 |
| BspACI | CCGC | 2 cut(s) | 295, 697 |
| BspCNI | CTCAG | 1 cut(s) | 633 |
| BspDI | ATCGAT | 1 cut(s) | 459 |
| BspEI | TCCGGA | 1 cut(s) | 583 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 1 cut(s) | 620 |
| BspPI | GGATC | 2 cut(s) | 555, 659 |
| BspT107I | GGYRCC | 1 cut(s) | 618 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BsrI | ACTGG | 2 cut(s) | 49, 178 |
| BssECI | CCNNGG | 1 cut(s) | 564 |
| BssMI | GATC | 3 cut(s) | 378, 560, 664 |
| BssNAI | GTATAC | 1 cut(s) | 648 |
| BssNI | GRCGYC | 1 cut(s) | 619 |
| Bst1107I | GTATAC | 1 cut(s) | 648 |
| Bst2UI | CCWGG | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| BstACI | GRCGYC | 1 cut(s) | 619 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 4 cut(s) | 118, 444, 609, 641 |
| BstDSI | CCRYGG | 1 cut(s) | 564 |
| BstEII | GGTNACC | 1 cut(s) | 692 |
| BstF5I | GGATG | 2 cut(s) | 144, 172 |
| BstH2I | RGCGCY | 1 cut(s) | 622 |
| BstHHI | GCGC | 1 cut(s) | 621 |
| BstKTI | GATC | 3 cut(s) | 381, 563, 667 |
| BstMAI | GTCTC | 2 cut(s) | 226, 430 |
| BstMBI | GATC | 3 cut(s) | 378, 560, 664 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 625 |
| BstNI | CCWGG | 1 cut(s) | 65 |
| BstPI | GGTNACC | 1 cut(s) | 692 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 1 cut(s) | 125 |
| BstV2I | GAAGAC | 2 cut(s) | 207, 410 |
| BstX2I | RGATCY | 1 cut(s) | 560 |
| BstYI | RGATCY | 1 cut(s) | 560 |
| BstZ17I | GTATAC | 1 cut(s) | 648 |
| Bsu15I | ATCGAT | 1 cut(s) | 459 |
| BsuTUI | ATCGAT | 1 cut(s) | 459 |
| BtgI | CCRYGG | 1 cut(s) | 564 |
| BtgZI | GCGATG | 1 cut(s) | 404 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsCI | GGATG | 2 cut(s) | 144, 172 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CfoI | GCGC | 1 cut(s) | 621 |
| ClaI | ATCGAT | 1 cut(s) | 459 |
| Csp6I | GTAC | 1 cut(s) | 181 |
| CviAII | CATG | 2 cut(s) | 491, 527 |
| CviQI | GTAC | 1 cut(s) | 181 |
| DdeI | CTNAG | 4 cut(s) | 118, 444, 609, 641 |
| DinI | GGCGCC | 1 cut(s) | 620 |
| DpnI | GATC | 3 cut(s) | 380, 562, 666 |
| DpnII | GATC | 3 cut(s) | 378, 560, 664 |
| Ecl136II | GAGCTC | 1 cut(s) | 496 |
| Eco24I | GRGCYC | 1 cut(s) | 498 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 496 |
| Eco57I | CTGAAG | 1 cut(s) | 563 |
| Eco91I | GGTNACC | 1 cut(s) | 692 |
| EcoICRI | GAGCTC | 1 cut(s) | 496 |
| EcoO65I | GGTNACC | 1 cut(s) | 692 |
| EcoRI | GAATTC | 1 cut(s) | 362 |
| EcoRII | CCWGG | 1 cut(s) | 63 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 498 |
| EgeI | GGCGCC | 1 cut(s) | 620 |
| EheI | GGCGCC | 1 cut(s) | 620 |
| Esp3I | CGTCTC | 1 cut(s) | 430 |
| FaeI | CATG | 2 cut(s) | 494, 530 |
| FatI | CATG | 2 cut(s) | 490, 526 |
| FauNDI | CATATG | 1 cut(s) | 162 |
| FblI | GTMKAC | 1 cut(s) | 647 |
| Fnu4HI | GCNGC | 1 cut(s) | 114 |
| FokI | GGATG | 2 cut(s) | 131, 179 |
| FriOI | GRGCYC | 1 cut(s) | 498 |
| Fsp4HI | GCNGC | 1 cut(s) | 114 |
| FspBI | CTAG | 2 cut(s) | 207, 272 |
| GlaI | GCGC | 1 cut(s) | 620 |
| GluI | GCNGC | 1 cut(s) | 114 |
| GsuI | CTGGAG | 1 cut(s) | 161 |
| HaeII | RGCGCY | 1 cut(s) | 622 |
| HapII | CCGG | 1 cut(s) | 584 |
| HhaI | GCGC | 1 cut(s) | 621 |
| Hin1I | GRCGYC | 1 cut(s) | 619 |
| Hin1II | CATG | 2 cut(s) | 494, 530 |
| Hin6I | GCGC | 1 cut(s) | 619 |
| HinP1I | GCGC | 1 cut(s) | 619 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 6 cut(s) | 154, 170, 254, 406, 456, 587 |
| HpaII | CCGG | 1 cut(s) | 584 |
| Hpy166II | GTNNAC | 1 cut(s) | 648 |
| Hpy188I | TCNGA | 4 cut(s) | 334, 543, 642, 664 |
| Hpy188III | TCNNGA | 5 cut(s) | 51, 266, 491, 584, 654 |
| Hpy8I | GTNNAC | 1 cut(s) | 648 |
| HpyAV | CCTTC | 4 cut(s) | 204, 427, 548, 683 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4IV | ACGT | 2 cut(s) | 69, 246 |
| HpyCH4V | TGCA | 3 cut(s) | 431, 470, 603 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 625 |
| HpyF3I | CTNAG | 4 cut(s) | 118, 444, 609, 641 |
| HpySE526I | ACGT | 2 cut(s) | 69, 246 |
| Hsp92I | GRCGYC | 1 cut(s) | 619 |
| Hsp92II | CATG | 2 cut(s) | 494, 530 |
| HspAI | GCGC | 1 cut(s) | 619 |
| KasI | GGCGCC | 1 cut(s) | 618 |
| Kpn2I | TCCGGA | 1 cut(s) | 583 |
| Kzo9I | GATC | 3 cut(s) | 378, 560, 664 |
| LmnI | GCTCC | 3 cut(s) | 34, 180, 503 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 36, 50, 77, 191, 279, 597, 639 |
| Lsp1109I | GCAGC | 1 cut(s) | 125 |
| LweI | GCATC | 1 cut(s) | 376 |
| MaeI | CTAG | 2 cut(s) | 207, 272 |
| MaeII | ACGT | 2 cut(s) | 69, 246 |
| MaeIII | GTNAC | 4 cut(s) | 5, 251, 478, 692 |
| MalI | GATC | 3 cut(s) | 380, 562, 666 |
| MboI | GATC | 3 cut(s) | 378, 560, 664 |
| MboII | GAAGA | 6 cut(s) | 113, 209, 212, 242, 415, 556 |
| MflI | RGATCY | 1 cut(s) | 560 |
| MhlI | GDGCHC | 1 cut(s) | 498 |
| MluCI | AATT | 4 cut(s) | 17, 362, 553, 592 |
| Mly113I | GGCGCC | 1 cut(s) | 619 |
| MlyI | GAGTC | 3 cut(s) | 148, 248, 400 |
| MnlI | CCTC | 5 cut(s) | 115, 302, 608, 616, 636 |
| MroI | TCCGGA | 1 cut(s) | 583 |
| MroXI | GAANNNNTTC | 1 cut(s) | 339 |
| MseI | TTAA | 3 cut(s) | 321, 348, 356 |
| MslI | CAYNNNNRTG | 2 cut(s) | 149, 165 |
| MspI | CCGG | 1 cut(s) | 584 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 625 |
| NarI | GGCGCC | 1 cut(s) | 619 |
| NdeI | CATATG | 1 cut(s) | 162 |
| NdeII | GATC | 3 cut(s) | 378, 560, 664 |
| NlaIII | CATG | 2 cut(s) | 494, 530 |
| NlaIV | GGNNCC | 1 cut(s) | 620 |
| NmuCI | GTSAC | 2 cut(s) | 251, 478 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PdmI | GAANNNNTTC | 1 cut(s) | 339 |
| PfeI | GAWTC | 3 cut(s) | 170, 456, 587 |
| PkrI | GCNGC | 1 cut(s) | 115 |
| PleI | GAGTC | 3 cut(s) | 148, 248, 400 |
| PluTI | GGCGCC | 1 cut(s) | 622 |
| PpsI | GAGTC | 3 cut(s) | 148, 248, 400 |
| Psp124BI | GAGCTC | 1 cut(s) | 498 |
| Psp6I | CCWGG | 1 cut(s) | 63 |
| PspEI | GGTNACC | 1 cut(s) | 692 |
| PspGI | CCWGG | 1 cut(s) | 63 |
| PspN4I | GGNNCC | 1 cut(s) | 620 |
| PsuI | RGATCY | 1 cut(s) | 560 |
| RsaI | GTAC | 1 cut(s) | 182 |
| RsaNI | GTAC | 1 cut(s) | 181 |
| RseI | CAYNNNNRTG | 2 cut(s) | 149, 165 |
| SacI | GAGCTC | 1 cut(s) | 498 |
| SaqAI | TTAA | 3 cut(s) | 321, 348, 356 |
| SatI | GCNGC | 1 cut(s) | 114 |
| Sau3AI | GATC | 3 cut(s) | 378, 560, 664 |
| SchI | GAGTC | 3 cut(s) | 148, 248, 400 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 1 cut(s) | 498 |
| SfaNI | GCATC | 1 cut(s) | 376 |
| SfoI | GGCGCC | 1 cut(s) | 620 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 149, 165 |
| SmlI | CTYRAG | 1 cut(s) | 90 |
| SmoI | CTYRAG | 1 cut(s) | 90 |
| Sse9I | AATT | 4 cut(s) | 17, 362, 553, 592 |
| SsiI | CCGC | 2 cut(s) | 295, 697 |
| SspDI | GGCGCC | 1 cut(s) | 618 |
| SspMI | CTAG | 2 cut(s) | 207, 272 |
| SstI | GAGCTC | 1 cut(s) | 498 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TaiI | ACGT | 2 cut(s) | 72, 249 |
| TaqI | TCGA | 3 cut(s) | 228, 454, 459 |
| TasI | AATT | 4 cut(s) | 17, 362, 553, 592 |
| TfiI | GAWTC | 3 cut(s) | 170, 456, 587 |
| Tru1I | TTAA | 3 cut(s) | 321, 348, 356 |
| Tru9I | TTAA | 3 cut(s) | 321, 348, 356 |
| TseFI | GTSAC | 2 cut(s) | 251, 478 |
| TseI | GCWGC | 1 cut(s) | 113 |
| Tsp45I | GTSAC | 2 cut(s) | 251, 478 |
| TspDTI | ATGAA | 4 cut(s) | 206, 210, 479, 524 |
| TspGWI | ACGGA | 2 cut(s) | 239, 553 |
| XapI | RAATTY | 1 cut(s) | 362 |
| XmiI | GTMKAC | 1 cut(s) | 647 |
| XmnI | GAANNNNTTC | 1 cut(s) | 339 |
| XspI | CTAG | 2 cut(s) | 207, 272 |