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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 423 |
| AatII | GACGTC | 1 cut(s) | 193 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 565 |
| AccBSI | CCGCTC | 1 cut(s) | 388 |
| AccII | CGCG | 1 cut(s) | 480 |
| AciI | CCGC | 3 cut(s) | 388, 470, 480 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcoI | YGGCCR | 1 cut(s) | 523 |
| AcvI | CACGTG | 1 cut(s) | 497 |
| AcyI | GRCGYC | 2 cut(s) | 190, 566 |
| AdeI | CACNNNGTG | 2 cut(s) | 482, 595 |
| AfaI | GTAC | 1 cut(s) | 147 |
| AfeI | AGCGCT | 1 cut(s) | 258 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 445, 498, 527, 579 |
| AflIII | ACRYGT | 1 cut(s) | 494 |
| AgsI | TTSAA | 5 cut(s) | 96, 307, 314, 343, 382 |
| AjnI | CCWGG | 2 cut(s) | 117, 520 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 3 cut(s) | 48, 63, 247 |
| AluI | AGCT | 3 cut(s) | 48, 63, 247 |
| Alw21I | GWGCWC | 1 cut(s) | 600 |
| Alw44I | GTGCAC | 1 cut(s) | 596 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Aor51HI | AGCGCT | 1 cut(s) | 258 |
| AoxI | GGCC | 3 cut(s) | 523, 545, 552 |
| ApaLI | GTGCAC | 1 cut(s) | 596 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 329, 361 |
| AspA2I | CCTAGG | 1 cut(s) | 577 |
| AspLEI | GCGC | 4 cut(s) | 259, 270, 330, 568 |
| AspS9I | GGNCC | 3 cut(s) | 425, 545, 552 |
| AvaII | GGWCC | 1 cut(s) | 425 |
| AvrII | CCTAGG | 1 cut(s) | 577 |
| BaeGI | GKGCMC | 1 cut(s) | 600 |
| BanI | GGYRCC | 2 cut(s) | 121, 565 |
| BbrPI | CACGTG | 1 cut(s) | 497 |
| Bbv12I | GWGCWC | 1 cut(s) | 600 |
| BccI | CCATC | 1 cut(s) | 415 |
| BceAI | ACGGC | 1 cut(s) | 510 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 111, 145 |
| BciT130I | CCWGG | 2 cut(s) | 119, 522 |
| BciVI | GTATCC | 2 cut(s) | 466, 527 |
| BfaI | CTAG | 2 cut(s) | 260, 578 |
| BfoI | RGCGCY | 3 cut(s) | 260, 271, 569 |
| BfuI | GTATCC | 2 cut(s) | 466, 527 |
| BlnI | CCTAGG | 1 cut(s) | 577 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 522 |
| Bme18I | GGWCC | 1 cut(s) | 425 |
| BmgT120I | GGNCC | 3 cut(s) | 425, 545, 552 |
| BmiI | GGNNCC | 5 cut(s) | 123, 392, 426, 546, 567 |
| BmrFI | CCNGG | 2 cut(s) | 119, 522 |
| BmsI | GCATC | 2 cut(s) | 174, 226 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BsaAI | YACGTR | 1 cut(s) | 497 |
| BsaHI | GRCGYC | 2 cut(s) | 190, 566 |
| BsaJI | CCNNGG | 6 cut(s) | 271, 520, 526, 548, 555, 577 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 493, 523 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 445, 498, 527, 579 |
| Bse3DI | GCAATG | 2 cut(s) | 283, 493 |
| BseBI | CCWGG | 2 cut(s) | 119, 522 |
| BseDI | CCNNGG | 6 cut(s) | 271, 520, 526, 548, 555, 577 |
| BseGI | GGATG | 2 cut(s) | 241, 426 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 445, 498, 527, 579 |
| BseMI | GCAATG | 2 cut(s) | 283, 493 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 600 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| Bsh1236I | CGCG | 1 cut(s) | 480 |
| BshFI | GGCC | 3 cut(s) | 525, 547, 554 |
| BshNI | GGYRCC | 2 cut(s) | 121, 565 |
| BsiHKAI | GWGCWC | 1 cut(s) | 600 |
| BslFI | GGGAC | 2 cut(s) | 420, 429 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 445, 498, 527, 579 |
| BsmFI | GGGAC | 2 cut(s) | 420, 429 |
| BsnI | GGCC | 3 cut(s) | 525, 547, 554 |
| Bsp1286I | GDGCHC | 1 cut(s) | 600 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| Bsp19I | CCATGG | 2 cut(s) | 548, 555 |
| BspACI | CCGC | 3 cut(s) | 388, 470, 480 |
| BspANI | GGCC | 3 cut(s) | 525, 547, 554 |
| BspFNI | CGCG | 1 cut(s) | 480 |
| BspLI | GGNNCC | 5 cut(s) | 123, 392, 426, 546, 567 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 1 cut(s) | 258 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 565 |
| BsrBI | CCGCTC | 1 cut(s) | 388 |
| BsrDI | GCAATG | 2 cut(s) | 283, 493 |
| BssECI | CCNNGG | 6 cut(s) | 271, 520, 526, 548, 555, 577 |
| BssMI | GATC | 1 cut(s) | 133 |
| BssNI | GRCGYC | 2 cut(s) | 190, 566 |
| BssT1I | CCWWGG | 4 cut(s) | 271, 548, 555, 577 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 522 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 2 cut(s) | 190, 566 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 604 |
| BstBAI | YACGTR | 1 cut(s) | 497 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDSI | CCRYGG | 3 cut(s) | 526, 548, 555 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 241, 426 |
| BstFNI | CGCG | 1 cut(s) | 480 |
| BstH2I | RGCGCY | 3 cut(s) | 260, 271, 569 |
| BstHHI | GCGC | 4 cut(s) | 259, 270, 330, 568 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 604 |
| BstNI | CCWGG | 2 cut(s) | 119, 522 |
| BstNSI | RCATGY | 2 cut(s) | 167, 607 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 520 |
| BstSLI | GKGCMC | 1 cut(s) | 600 |
| BstUI | CGCG | 1 cut(s) | 480 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 562 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuI | GTATCC | 2 cut(s) | 466, 527 |
| BsuRI | GGCC | 3 cut(s) | 525, 547, 554 |
| BtgI | CCRYGG | 3 cut(s) | 526, 548, 555 |
| BtsCI | GGATG | 2 cut(s) | 241, 426 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CfoI | GCGC | 4 cut(s) | 259, 270, 330, 568 |
| Cfr13I | GGNCC | 3 cut(s) | 425, 545, 552 |
| Csp6I | GTAC | 1 cut(s) | 146 |
| CviAII | CATG | 6 cut(s) | 31, 164, 410, 549, 556, 604 |
| CviJI | RGCY | 6 cut(s) | 48, 63, 247, 525, 547, 554 |
| CviKI_1 | RGCY | 6 cut(s) | 48, 63, 247, 525, 547, 554 |
| CviQI | GTAC | 1 cut(s) | 146 |
| DinI | GGCGCC | 1 cut(s) | 567 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| DraIII | CACNNNGTG | 2 cut(s) | 482, 595 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 423 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 423 |
| EaeI | YGGCCR | 1 cut(s) | 523 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco130I | CCWWGG | 4 cut(s) | 271, 548, 555, 577 |
| Eco47I | GGWCC | 1 cut(s) | 425 |
| Eco47III | AGCGCT | 1 cut(s) | 258 |
| Eco72I | CACGTG | 1 cut(s) | 497 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 520 |
| EcoT14I | CCWWGG | 4 cut(s) | 271, 548, 555, 577 |
| EgeI | GGCGCC | 1 cut(s) | 567 |
| EheI | GGCGCC | 1 cut(s) | 567 |
| ErhI | CCWWGG | 4 cut(s) | 271, 548, 555, 577 |
| FaeI | CATG | 6 cut(s) | 34, 167, 413, 552, 559, 607 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 255, 287 |
| FaqI | GGGAC | 2 cut(s) | 420, 429 |
| FatI | CATG | 6 cut(s) | 30, 163, 409, 548, 555, 603 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FokI | GGATG | 2 cut(s) | 248, 433 |
| FspBI | CTAG | 2 cut(s) | 260, 578 |
| GlaI | GCGC | 4 cut(s) | 258, 269, 329, 567 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| HaeII | RGCGCY | 3 cut(s) | 260, 271, 569 |
| HaeIII | GGCC | 3 cut(s) | 525, 547, 554 |
| HhaI | GCGC | 4 cut(s) | 259, 270, 330, 568 |
| Hin1I | GRCGYC | 2 cut(s) | 190, 566 |
| Hin1II | CATG | 6 cut(s) | 34, 167, 413, 552, 559, 607 |
| Hin6I | GCGC | 4 cut(s) | 257, 268, 328, 566 |
| HinP1I | GCGC | 4 cut(s) | 257, 268, 328, 566 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| Hpy166II | GTNNAC | 2 cut(s) | 589, 598 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 133, 212 |
| Hpy188III | TCNNGA | 1 cut(s) | 181 |
| Hpy8I | GTNNAC | 2 cut(s) | 589, 598 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 443 |
| HpyCH4IV | ACGT | 3 cut(s) | 190, 496, 585 |
| HpyCH4V | TGCA | 4 cut(s) | 239, 365, 598, 607 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 604 |
| HpySE526I | ACGT | 3 cut(s) | 190, 496, 585 |
| Hsp92I | GRCGYC | 2 cut(s) | 190, 566 |
| Hsp92II | CATG | 6 cut(s) | 34, 167, 413, 552, 559, 607 |
| HspAI | GCGC | 4 cut(s) | 257, 268, 328, 566 |
| KasI | GGCGCC | 1 cut(s) | 565 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LguI | GCTCTTC | 1 cut(s) | 258 |
| LmnI | GCTCC | 1 cut(s) | 385 |
| LpnPI | CCDG | 7 cut(s) | 49, 104, 131, 312, 453, 507, 534 |
| LweI | GCATC | 2 cut(s) | 174, 226 |
| MaeI | CTAG | 2 cut(s) | 260, 578 |
| MaeII | ACGT | 3 cut(s) | 190, 496, 585 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 1 cut(s) | 135 |
| MbiI | CCGCTC | 1 cut(s) | 388 |
| MboI | GATC | 1 cut(s) | 133 |
| MboII | GAAGA | 1 cut(s) | 275 |
| MfeI | CAATTG | 1 cut(s) | 613 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 600 |
| MluCI | AATT | 1 cut(s) | 613 |
| Mly113I | GGCGCC | 1 cut(s) | 566 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 7 cut(s) | 98, 302, 305, 368, 406, 497, 584 |
| MslI | CAYNNNNRTG | 1 cut(s) | 560 |
| MspR9I | CCNGG | 2 cut(s) | 119, 522 |
| MunI | CAATTG | 1 cut(s) | 613 |
| MvaI | CCWGG | 2 cut(s) | 119, 522 |
| MvnI | CGCG | 1 cut(s) | 480 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 604 |
| NarI | GGCGCC | 1 cut(s) | 566 |
| NcoI | CCATGG | 2 cut(s) | 548, 555 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 1 cut(s) | 133 |
| NlaIII | CATG | 6 cut(s) | 34, 167, 413, 552, 559, 607 |
| NlaIV | GGNNCC | 5 cut(s) | 123, 392, 426, 546, 567 |
| NspI | RCATGY | 2 cut(s) | 167, 607 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 1 cut(s) | 258 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PluTI | GGCGCC | 1 cut(s) | 569 |
| PmaCI | CACGTG | 1 cut(s) | 497 |
| PmlI | CACGTG | 1 cut(s) | 497 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 1 cut(s) | 497 |
| Psp6I | CCWGG | 2 cut(s) | 117, 520 |
| PspCI | CACGTG | 1 cut(s) | 497 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 2 cut(s) | 117, 520 |
| PspN4I | GGNNCC | 5 cut(s) | 123, 392, 426, 546, 567 |
| PspPI | GGNCC | 3 cut(s) | 425, 545, 552 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 147 |
| RsaNI | GTAC | 1 cut(s) | 146 |
| RseI | CAYNNNNRTG | 1 cut(s) | 560 |
| SapI | GCTCTTC | 1 cut(s) | 258 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| Sau96I | GGNCC | 3 cut(s) | 425, 545, 552 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 522 |
| SduI | GDGCHC | 1 cut(s) | 600 |
| SfaNI | GCATC | 2 cut(s) | 174, 226 |
| SfoI | GGCGCC | 1 cut(s) | 567 |
| SinI | GGWCC | 1 cut(s) | 425 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 560 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 1 cut(s) | 613 |
| SsiI | CCGC | 3 cut(s) | 388, 470, 480 |
| SspDI | GGCGCC | 1 cut(s) | 565 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 2 cut(s) | 260, 578 |
| StyD4I | CCNGG | 2 cut(s) | 117, 520 |
| StyI | CCWWGG | 4 cut(s) | 271, 548, 555, 577 |
| TaiI | ACGT | 3 cut(s) | 193, 499, 588 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 1 cut(s) | 613 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 1 cut(s) | 24 |
| TspGWI | ACGGA | 1 cut(s) | 433 |
| VneI | GTGCAC | 1 cut(s) | 596 |
| VpaK11BI | GGWCC | 1 cut(s) | 425 |
| XceI | RCATGY | 2 cut(s) | 167, 607 |
| XmaJI | CCTAGG | 1 cut(s) | 577 |
| XspI | CTAG | 2 cut(s) | 260, 578 |
| ZraI | GACGTC | 1 cut(s) | 191 |