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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 618 |
| Acc36I | ACCTGC | 1 cut(s) | 645 |
| AccB1I | GGYRCC | 2 cut(s) | 731, 752 |
| AccBSI | CCGCTC | 1 cut(s) | 583 |
| AciI | CCGC | 5 cut(s) | 583, 631, 652, 665, 915 |
| AclWI | GGATC | 1 cut(s) | 841 |
| AcsI | RAATTY | 3 cut(s) | 182, 260, 385 |
| AcvI | CACGTG | 1 cut(s) | 674 |
| AdeI | CACNNNGTG | 2 cut(s) | 677, 782 |
| AfaI | GTAC | 1 cut(s) | 217 |
| AfeI | AGCGCT | 2 cut(s) | 408, 419 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 640, 722, 766 |
| AflIII | ACRYGT | 2 cut(s) | 671, 816 |
| AgsI | TTSAA | 5 cut(s) | 266, 367, 390, 457, 886 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 493, 560 |
| AjnI | CCWGG | 1 cut(s) | 715 |
| AleI | CACNNNNGTG | 1 cut(s) | 569 |
| AluBI | AGCT | 3 cut(s) | 397, 521, 890 |
| AluI | AGCT | 3 cut(s) | 397, 521, 890 |
| Alw21I | GWGCWC | 2 cut(s) | 787, 906 |
| Alw26I | GTCTC | 2 cut(s) | 161, 852 |
| Alw44I | GTGCAC | 2 cut(s) | 783, 902 |
| AlwI | GGATC | 1 cut(s) | 841 |
| Aor51HI | AGCGCT | 2 cut(s) | 408, 419 |
| ApaLI | GTGCAC | 2 cut(s) | 783, 902 |
| ApeKI | GCWGC | 3 cut(s) | 22, 41, 50 |
| ApoI | RAATTY | 3 cut(s) | 182, 260, 385 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 253, 522 |
| AspA2I | CCTAGG | 1 cut(s) | 764 |
| AspLEI | GCGC | 3 cut(s) | 409, 420, 480 |
| AspS9I | GGNCC | 2 cut(s) | 117, 620 |
| AsuHPI | GGTGA | 2 cut(s) | 518, 862 |
| AsuII | TTCGAA | 1 cut(s) | 225 |
| AvaII | GGWCC | 2 cut(s) | 117, 620 |
| AvrII | CCTAGG | 1 cut(s) | 764 |
| BaeGI | GKGCMC | 2 cut(s) | 787, 906 |
| BanI | GGYRCC | 2 cut(s) | 731, 752 |
| BauI | CACGAG | 1 cut(s) | 690 |
| BbrPI | CACGTG | 1 cut(s) | 674 |
| Bbv12I | GWGCWC | 2 cut(s) | 787, 906 |
| BbvI | GCAGC | 3 cut(s) | 28, 34, 62 |
| BccI | CCATC | 1 cut(s) | 873 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 11, 45 |
| BciT130I | CCWGG | 1 cut(s) | 717 |
| BciVI | GTATCC | 2 cut(s) | 661, 722 |
| BclI | TGATCA | 1 cut(s) | 111 |
| BcoDI | GTCTC | 2 cut(s) | 161, 852 |
| BfaI | CTAG | 3 cut(s) | 281, 410, 765 |
| BfmI | CTRYAG | 3 cut(s) | 20, 48, 530 |
| BfoI | RGCGCY | 2 cut(s) | 410, 421 |
| BfuAI | ACCTGC | 1 cut(s) | 645 |
| BfuI | GTATCC | 2 cut(s) | 661, 722 |
| BglII | AGATCT | 1 cut(s) | 210 |
| BisI | GCNGC | 4 cut(s) | 23, 42, 51, 915 |
| BlnI | CCTAGG | 1 cut(s) | 764 |
| BlsI | GCNGC | 4 cut(s) | 24, 43, 52, 916 |
| Bme1390I | CCNGG | 1 cut(s) | 717 |
| Bme18I | GGWCC | 2 cut(s) | 117, 620 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 493, 560 |
| BmgT120I | GGNCC | 2 cut(s) | 117, 620 |
| BmiI | GGNNCC | 4 cut(s) | 587, 621, 733, 754 |
| BmrFI | CCNGG | 1 cut(s) | 717 |
| BmsI | GCATC | 1 cut(s) | 901 |
| BoxI | GACNNNNGTC | 1 cut(s) | 819 |
| Bpu14I | TTCGAA | 1 cut(s) | 225 |
| BpuEI | CTTGAG | 1 cut(s) | 303 |
| Bsa29I | ATCGAT | 1 cut(s) | 826 |
| BsaAI | YACGTR | 1 cut(s) | 674 |
| BsaBI | GATNNNNATC | 2 cut(s) | 129, 832 |
| BsaJI | CCNNGG | 3 cut(s) | 715, 735, 764 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 688, 718, 745, 775 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 640, 722, 766 |
| Bse3DI | GCAATG | 2 cut(s) | 433, 688 |
| Bse8I | GATNNNNATC | 2 cut(s) | 129, 832 |
| BseBI | CCWGG | 1 cut(s) | 717 |
| BseCI | ATCGAT | 1 cut(s) | 826 |
| BseDI | CCNNGG | 3 cut(s) | 715, 735, 764 |
| BseGI | GGATG | 3 cut(s) | 82, 861, 916 |
| BseJI | GATNNNNATC | 2 cut(s) | 129, 832 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 640, 722, 766 |
| BseMI | GCAATG | 2 cut(s) | 433, 688 |
| BseMII | CTCAG | 3 cut(s) | 135, 373, 803 |
| BseRI | GAGGAG | 1 cut(s) | 434 |
| BseSI | GKGCMC | 2 cut(s) | 787, 906 |
| BseXI | GCAGC | 3 cut(s) | 28, 34, 62 |
| BsgI | GTGCAG | 1 cut(s) | 96 |
| BshNI | GGYRCC | 2 cut(s) | 731, 752 |
| BshVI | ATCGAT | 1 cut(s) | 826 |
| BsiHKAI | GWGCWC | 2 cut(s) | 787, 906 |
| BslFI | GGGAC | 1 cut(s) | 624 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 640, 722, 766 |
| BsmAI | GTCTC | 2 cut(s) | 161, 852 |
| BsmFI | GGGAC | 1 cut(s) | 624 |
| Bsp119I | TTCGAA | 1 cut(s) | 225 |
| Bsp1286I | GDGCHC | 2 cut(s) | 787, 906 |
| Bsp1407I | TGTACA | 1 cut(s) | 215 |
| Bsp143I | GATC | 8 cut(s) | 79, 111, 124, 174, 210, 283, 378, 833 |
| Bsp19I | CCATGG | 1 cut(s) | 735 |
| BspACI | CCGC | 5 cut(s) | 583, 631, 652, 665, 915 |
| BspCNI | CTCAG | 3 cut(s) | 134, 372, 802 |
| BspDI | ATCGAT | 1 cut(s) | 826 |
| BspLI | GGNNCC | 4 cut(s) | 587, 621, 733, 754 |
| BspMAI | CTGCAG | 2 cut(s) | 24, 52 |
| BspMI | ACCTGC | 1 cut(s) | 645 |
| BspPI | GGATC | 1 cut(s) | 841 |
| BspQI | GCTCTTC | 2 cut(s) | 408, 528 |
| BspT104I | TTCGAA | 1 cut(s) | 225 |
| BspT107I | GGYRCC | 2 cut(s) | 731, 752 |
| BsrBI | CCGCTC | 1 cut(s) | 583 |
| BsrDI | GCAATG | 2 cut(s) | 433, 688 |
| BsrGI | TGTACA | 1 cut(s) | 215 |
| BssECI | CCNNGG | 3 cut(s) | 715, 735, 764 |
| BssMI | GATC | 8 cut(s) | 79, 111, 124, 174, 210, 283, 378, 833 |
| BssSI | CACGAG | 1 cut(s) | 690 |
| BssT1I | CCWWGG | 2 cut(s) | 735, 764 |
| Bst2BI | CACGAG | 1 cut(s) | 690 |
| Bst2UI | CCWGG | 1 cut(s) | 717 |
| Bst4CI | ACNGT | 1 cut(s) | 534 |
| Bst6I | CTCTTC | 4 cut(s) | 164, 170, 408, 528 |
| BstAUI | TGTACA | 1 cut(s) | 215 |
| BstBAI | YACGTR | 1 cut(s) | 674 |
| BstBI | TTCGAA | 1 cut(s) | 225 |
| BstDEI | CTNAG | 3 cut(s) | 121, 359, 789 |
| BstDSI | CCRYGG | 1 cut(s) | 735 |
| BstF5I | GGATG | 3 cut(s) | 82, 861, 916 |
| BstH2I | RGCGCY | 2 cut(s) | 410, 421 |
| BstHHI | GCGC | 3 cut(s) | 409, 420, 480 |
| BstKTI | GATC | 8 cut(s) | 82, 114, 127, 177, 213, 286, 381, 836 |
| BstMAI | GTCTC | 2 cut(s) | 161, 852 |
| BstMBI | GATC | 8 cut(s) | 79, 111, 124, 174, 210, 283, 378, 833 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 22, 47, 50, 415, 580 |
| BstNI | CCWGG | 1 cut(s) | 717 |
| BstNSI | RCATGY | 2 cut(s) | 317, 820 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 819 |
| BstSCI | CCNGG | 1 cut(s) | 715 |
| BstSFI | CTRYAG | 3 cut(s) | 20, 48, 530 |
| BstSLI | GKGCMC | 2 cut(s) | 787, 906 |
| BstV1I | GCAGC | 3 cut(s) | 28, 34, 62 |
| BstX2I | RGATCY | 1 cut(s) | 210 |
| BstYI | RGATCY | 1 cut(s) | 210 |
| Bsu15I | ATCGAT | 1 cut(s) | 826 |
| BsuI | GTATCC | 2 cut(s) | 661, 722 |
| BsuTUI | ATCGAT | 1 cut(s) | 826 |
| BtgI | CCRYGG | 1 cut(s) | 735 |
| BtsCI | GGATG | 3 cut(s) | 82, 861, 916 |
| BveI | ACCTGC | 1 cut(s) | 645 |
| CfoI | GCGC | 3 cut(s) | 409, 420, 480 |
| Cfr13I | GGNCC | 2 cut(s) | 117, 620 |
| ClaI | ATCGAT | 1 cut(s) | 826 |
| Csp6I | GTAC | 1 cut(s) | 216 |
| CviAII | CATG | 3 cut(s) | 314, 736, 817 |
| CviJI | RGCY | 5 cut(s) | 190, 397, 461, 521, 890 |
| CviKI_1 | RGCY | 5 cut(s) | 190, 397, 461, 521, 890 |
| CviQI | GTAC | 1 cut(s) | 216 |
| DdeI | CTNAG | 3 cut(s) | 121, 359, 789 |
| DpnI | GATC | 8 cut(s) | 81, 113, 126, 176, 212, 285, 380, 835 |
| DpnII | GATC | 8 cut(s) | 79, 111, 124, 174, 210, 283, 378, 833 |
| DraIII | CACNNNGTG | 2 cut(s) | 677, 782 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 618 |
| DriI | GACNNNNNGTC | 2 cut(s) | 493, 560 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 618 |
| Eam1104I | CTCTTC | 4 cut(s) | 164, 170, 408, 528 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 493, 560 |
| EarI | CTCTTC | 4 cut(s) | 164, 170, 408, 528 |
| Eco130I | CCWWGG | 2 cut(s) | 735, 764 |
| Eco47I | GGWCC | 2 cut(s) | 117, 620 |
| Eco47III | AGCGCT | 2 cut(s) | 408, 419 |
| Eco72I | CACGTG | 1 cut(s) | 674 |
| EcoO109I | RGGNCCY | 1 cut(s) | 117 |
| EcoRI | GAATTC | 1 cut(s) | 385 |
| EcoRII | CCWGG | 1 cut(s) | 715 |
| EcoT14I | CCWWGG | 2 cut(s) | 735, 764 |
| ErhI | CCWWGG | 2 cut(s) | 735, 764 |
| FaeI | CATG | 3 cut(s) | 317, 739, 820 |
| FaqI | GGGAC | 1 cut(s) | 624 |
| FatI | CATG | 3 cut(s) | 313, 735, 816 |
| FauNDI | CATATG | 1 cut(s) | 345 |
| FbaI | TGATCA | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 4 cut(s) | 23, 42, 51, 915 |
| FokI | GGATG | 3 cut(s) | 69, 848, 923 |
| Fsp4HI | GCNGC | 4 cut(s) | 23, 42, 51, 915 |
| FspBI | CTAG | 3 cut(s) | 281, 410, 765 |
| GlaI | GCGC | 3 cut(s) | 408, 419, 479 |
| GluI | GCNGC | 4 cut(s) | 23, 42, 51, 915 |
| HaeII | RGCGCY | 2 cut(s) | 410, 421 |
| HhaI | GCGC | 3 cut(s) | 409, 420, 480 |
| Hin1II | CATG | 3 cut(s) | 317, 739, 820 |
| Hin6I | GCGC | 3 cut(s) | 407, 418, 478 |
| HinP1I | GCGC | 3 cut(s) | 407, 418, 478 |
| HinfI | GANTC | 3 cut(s) | 199, 437, 688 |
| HphI | GGTGA | 2 cut(s) | 518, 862 |
| Hpy166II | GTNNAC | 4 cut(s) | 218, 554, 785, 904 |
| Hpy188I | TCNGA | 5 cut(s) | 124, 174, 243, 362, 517 |
| Hpy188III | TCNNGA | 5 cut(s) | 109, 115, 331, 382, 390 |
| Hpy8I | GTNNAC | 4 cut(s) | 218, 554, 785, 904 |
| HpyAV | CCTTC | 4 cut(s) | 144, 148, 451, 638 |
| HpyCH4III | ACNGT | 1 cut(s) | 534 |
| HpyCH4IV | ACGT | 3 cut(s) | 613, 673, 781 |
| HpyCH4V | TGCA | 6 cut(s) | 22, 50, 77, 93, 785, 904 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 22, 47, 50, 415, 580 |
| HpyF3I | CTNAG | 3 cut(s) | 121, 359, 789 |
| HpySE526I | ACGT | 3 cut(s) | 613, 673, 781 |
| Hsp92II | CATG | 3 cut(s) | 317, 739, 820 |
| HspAI | GCGC | 3 cut(s) | 407, 418, 478 |
| Ksp22I | TGATCA | 1 cut(s) | 111 |
| Kzo9I | GATC | 8 cut(s) | 79, 111, 124, 174, 210, 283, 378, 833 |
| LguI | GCTCTTC | 2 cut(s) | 408, 528 |
| LmnI | GCTCC | 1 cut(s) | 580 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 34, 62 |
| LweI | GCATC | 1 cut(s) | 901 |
| MaeI | CTAG | 3 cut(s) | 281, 410, 765 |
| MaeII | ACGT | 3 cut(s) | 613, 673, 781 |
| MaeIII | GTNAC | 1 cut(s) | 562 |
| MalI | GATC | 8 cut(s) | 81, 113, 126, 176, 212, 285, 380, 835 |
| MbiI | CCGCTC | 1 cut(s) | 583 |
| MboI | GATC | 8 cut(s) | 79, 111, 124, 174, 210, 283, 378, 833 |
| MboII | GAAGA | 5 cut(s) | 151, 157, 425, 515, 857 |
| MflI | RGATCY | 1 cut(s) | 210 |
| MhlI | GDGCHC | 2 cut(s) | 787, 906 |
| MluCI | AATT | 4 cut(s) | 182, 260, 385, 511 |
| MlyI | GAGTC | 2 cut(s) | 208, 682 |
| MroXI | GAANNNNTTC | 2 cut(s) | 253, 522 |
| MseI | TTAA | 2 cut(s) | 492, 794 |
| MslI | CAYNNNNRTG | 3 cut(s) | 569, 828, 909 |
| MspR9I | CCNGG | 1 cut(s) | 717 |
| MvaI | CCWGG | 1 cut(s) | 717 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 22, 47, 50, 415, 580 |
| NcoI | CCATGG | 1 cut(s) | 735 |
| NdeI | CATATG | 1 cut(s) | 345 |
| NdeII | GATC | 8 cut(s) | 79, 111, 124, 174, 210, 283, 378, 833 |
| NlaIII | CATG | 3 cut(s) | 317, 739, 820 |
| NlaIV | GGNNCC | 4 cut(s) | 587, 621, 733, 754 |
| NmuCI | GTSAC | 1 cut(s) | 562 |
| NspI | RCATGY | 2 cut(s) | 317, 820 |
| NspV | TTCGAA | 1 cut(s) | 225 |
| OliI | CACNNNNGTG | 1 cut(s) | 569 |
| PciI | ACATGT | 1 cut(s) | 816 |
| PciSI | GCTCTTC | 2 cut(s) | 408, 528 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 778 |
| PdmI | GAANNNNTTC | 2 cut(s) | 253, 522 |
| PfeI | GAWTC | 1 cut(s) | 437 |
| PkrI | GCNGC | 4 cut(s) | 24, 43, 52, 916 |
| PleI | GAGTC | 2 cut(s) | 207, 682 |
| PmaCI | CACGTG | 1 cut(s) | 674 |
| PmlI | CACGTG | 1 cut(s) | 674 |
| PpsI | GAGTC | 2 cut(s) | 207, 682 |
| Ppu21I | YACGTR | 1 cut(s) | 674 |
| PpuMI | RGGWCCY | 1 cut(s) | 117 |
| PscI | ACATGT | 1 cut(s) | 816 |
| PshAI | GACNNNNGTC | 1 cut(s) | 819 |
| Psp5II | RGGWCCY | 1 cut(s) | 117 |
| Psp6I | CCWGG | 1 cut(s) | 715 |
| PspCI | CACGTG | 1 cut(s) | 674 |
| PspGI | CCWGG | 1 cut(s) | 715 |
| PspN4I | GGNNCC | 4 cut(s) | 587, 621, 733, 754 |
| PspPI | GGNCC | 2 cut(s) | 117, 620 |
| PspPPI | RGGWCCY | 1 cut(s) | 117 |
| PstI | CTGCAG | 2 cut(s) | 24, 52 |
| PsuI | RGATCY | 1 cut(s) | 210 |
| RsaI | GTAC | 1 cut(s) | 217 |
| RsaNI | GTAC | 1 cut(s) | 216 |
| RseI | CAYNNNNRTG | 3 cut(s) | 569, 828, 909 |
| SapI | GCTCTTC | 2 cut(s) | 408, 528 |
| SaqAI | TTAA | 2 cut(s) | 492, 794 |
| SatI | GCNGC | 4 cut(s) | 23, 42, 51, 915 |
| Sau3AI | GATC | 8 cut(s) | 79, 111, 124, 174, 210, 283, 378, 833 |
| Sau96I | GGNCC | 2 cut(s) | 117, 620 |
| SchI | GAGTC | 2 cut(s) | 208, 682 |
| ScrFI | CCNGG | 1 cut(s) | 717 |
| SduI | GDGCHC | 2 cut(s) | 787, 906 |
| SfaNI | GCATC | 1 cut(s) | 901 |
| SfcI | CTRYAG | 3 cut(s) | 20, 48, 530 |
| SfuI | TTCGAA | 1 cut(s) | 225 |
| SinI | GGWCC | 2 cut(s) | 117, 620 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 569, 828, 909 |
| SmlI | CTYRAG | 1 cut(s) | 318 |
| SmoI | CTYRAG | 1 cut(s) | 318 |
| Sse9I | AATT | 4 cut(s) | 182, 260, 385, 511 |
| SsiI | CCGC | 5 cut(s) | 583, 631, 652, 665, 915 |
| SspMI | CTAG | 3 cut(s) | 281, 410, 765 |
| StyD4I | CCNGG | 1 cut(s) | 715 |
| StyI | CCWWGG | 2 cut(s) | 735, 764 |
| TaaI | ACNGT | 1 cut(s) | 534 |
| TaiI | ACGT | 3 cut(s) | 616, 676, 784 |
| TaqI | TCGA | 3 cut(s) | 225, 377, 826 |
| TasI | AATT | 4 cut(s) | 182, 260, 385, 511 |
| TatI | WGTACW | 1 cut(s) | 215 |
| TauI | GCSGC | 1 cut(s) | 917 |
| TfiI | GAWTC | 1 cut(s) | 437 |
| Tru1I | TTAA | 2 cut(s) | 492, 794 |
| Tru9I | TTAA | 2 cut(s) | 492, 794 |
| TseFI | GTSAC | 1 cut(s) | 562 |
| TseI | GCWGC | 3 cut(s) | 22, 41, 50 |
| Tsp45I | GTSAC | 1 cut(s) | 562 |
| TspDTI | ATGAA | 2 cut(s) | 130, 912 |
| VneI | GTGCAC | 2 cut(s) | 783, 902 |
| VpaK11BI | GGWCC | 2 cut(s) | 117, 620 |
| XapI | RAATTY | 3 cut(s) | 182, 260, 385 |
| XceI | RCATGY | 2 cut(s) | 317, 820 |
| XmaJI | CCTAGG | 1 cut(s) | 764 |
| XmnI | GAANNNNTTC | 2 cut(s) | 253, 522 |
| XspI | CTAG | 3 cut(s) | 281, 410, 765 |