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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 450 |
| Acc36I | ACCTGC | 1 cut(s) | 477 |
| AccB1I | GGYRCC | 3 cut(s) | 569, 590, 741 |
| AciI | CCGC | 5 cut(s) | 343, 463, 484, 497, 849 |
| AclWI | GGATC | 2 cut(s) | 374, 679 |
| AcuI | CTGAAG | 1 cut(s) | 369 |
| AcvI | CACGTG | 1 cut(s) | 524 |
| AcyI | GRCGYC | 1 cut(s) | 570 |
| AdeI | CACNNNGTG | 2 cut(s) | 509, 620 |
| AfaI | GTAC | 2 cut(s) | 7, 764 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 249, 472, 525, 604 |
| AflIII | ACRYGT | 2 cut(s) | 521, 654 |
| AgsI | TTSAA | 5 cut(s) | 163, 170, 691, 723, 820 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 266 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 111, 143 |
| AluBI | AGCT | 7 cut(s) | 29, 103, 115, 227, 385, 719, 824 |
| AluI | AGCT | 7 cut(s) | 29, 103, 115, 227, 385, 719, 824 |
| Alw21I | GWGCWC | 2 cut(s) | 625, 840 |
| Alw26I | GTCTC | 2 cut(s) | 284, 786 |
| Alw44I | GTGCAC | 2 cut(s) | 621, 836 |
| AlwI | GGATC | 2 cut(s) | 374, 679 |
| AoxI | GGCC | 1 cut(s) | 549 |
| ApaLI | GTGCAC | 2 cut(s) | 621, 836 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 228 |
| AspA2I | CCTAGG | 1 cut(s) | 602 |
| AspLEI | GCGC | 3 cut(s) | 186, 409, 572 |
| AspS9I | GGNCC | 2 cut(s) | 452, 549 |
| AsuHPI | GGTGA | 1 cut(s) | 796 |
| AvaII | GGWCC | 1 cut(s) | 452 |
| AvrII | CCTAGG | 1 cut(s) | 602 |
| AxyI | CCTNAGG | 1 cut(s) | 746 |
| BaeGI | GKGCMC | 2 cut(s) | 625, 840 |
| BanI | GGYRCC | 3 cut(s) | 569, 590, 741 |
| BauI | CACGAG | 2 cut(s) | 370, 558 |
| BbrPI | CACGTG | 1 cut(s) | 524 |
| Bbv12I | GWGCWC | 2 cut(s) | 625, 840 |
| BccI | CCATC | 1 cut(s) | 807 |
| BciVI | GTATCC | 1 cut(s) | 493 |
| BcoDI | GTCTC | 2 cut(s) | 284, 786 |
| BfaI | CTAG | 4 cut(s) | 116, 402, 603, 716 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BfoI | RGCGCY | 1 cut(s) | 573 |
| BfuAI | ACCTGC | 1 cut(s) | 477 |
| BfuI | GTATCC | 1 cut(s) | 493 |
| BisI | GCNGC | 1 cut(s) | 849 |
| BlnI | CCTAGG | 1 cut(s) | 602 |
| BlsI | GCNGC | 1 cut(s) | 850 |
| Bme18I | GGWCC | 1 cut(s) | 452 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 266 |
| BmgT120I | GGNCC | 2 cut(s) | 452, 549 |
| BmiI | GGNNCC | 5 cut(s) | 453, 550, 571, 592, 743 |
| BmsI | GCATC | 4 cut(s) | 30, 82, 629, 835 |
| BoxI | GACNNNNGTC | 1 cut(s) | 657 |
| BpuEI | CTTGAG | 1 cut(s) | 9 |
| Bsa29I | ATCGAT | 1 cut(s) | 664 |
| BsaAI | YACGTR | 1 cut(s) | 524 |
| BsaBI | GATNNNNATC | 1 cut(s) | 670 |
| BsaHI | GRCGYC | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 2 cut(s) | 573, 602 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 520, 550, 583, 613 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 249, 472, 525, 604 |
| Bse21I | CCTNAGG | 1 cut(s) | 746 |
| Bse3DI | GCAATG | 3 cut(s) | 139, 520, 701 |
| Bse8I | GATNNNNATC | 1 cut(s) | 670 |
| BseCI | ATCGAT | 1 cut(s) | 664 |
| BseDI | CCNNGG | 2 cut(s) | 573, 602 |
| BseGI | GGATG | 4 cut(s) | 97, 644, 795, 850 |
| BseJI | GATNNNNATC | 1 cut(s) | 670 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 249, 472, 525, 604 |
| BseMI | GCAATG | 3 cut(s) | 139, 520, 701 |
| BseMII | CTCAG | 3 cut(s) | 79, 641, 737 |
| BseSI | GKGCMC | 2 cut(s) | 625, 840 |
| BshFI | GGCC | 1 cut(s) | 551 |
| BshNI | GGYRCC | 3 cut(s) | 569, 590, 741 |
| BshVI | ATCGAT | 1 cut(s) | 664 |
| BsiHKAI | GWGCWC | 2 cut(s) | 625, 840 |
| BslFI | GGGAC | 1 cut(s) | 456 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 249, 472, 525, 604 |
| BsmAI | GTCTC | 2 cut(s) | 284, 786 |
| BsmFI | GGGAC | 1 cut(s) | 456 |
| BsnI | GGCC | 1 cut(s) | 551 |
| Bsp1286I | GDGCHC | 2 cut(s) | 625, 840 |
| Bsp143I | GATC | 3 cut(s) | 84, 366, 671 |
| Bsp19I | CCATGG | 1 cut(s) | 573 |
| BspACI | CCGC | 5 cut(s) | 343, 463, 484, 497, 849 |
| BspANI | GGCC | 1 cut(s) | 551 |
| BspCNI | CTCAG | 3 cut(s) | 78, 640, 738 |
| BspDI | ATCGAT | 1 cut(s) | 664 |
| BspLI | GGNNCC | 5 cut(s) | 453, 550, 571, 592, 743 |
| BspMI | ACCTGC | 1 cut(s) | 477 |
| BspPI | GGATC | 2 cut(s) | 374, 679 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 3 cut(s) | 569, 590, 741 |
| BsrDI | GCAATG | 3 cut(s) | 139, 520, 701 |
| BssECI | CCNNGG | 2 cut(s) | 573, 602 |
| BssMI | GATC | 3 cut(s) | 84, 366, 671 |
| BssNI | GRCGYC | 1 cut(s) | 570 |
| BssSI | CACGAG | 2 cut(s) | 370, 558 |
| BssT1I | CCWWGG | 2 cut(s) | 573, 602 |
| Bst2BI | CACGAG | 2 cut(s) | 370, 558 |
| Bst4CI | ACNGT | 1 cut(s) | 240 |
| Bst6I | CTCTTC | 2 cut(s) | 155, 234 |
| BstACI | GRCGYC | 1 cut(s) | 570 |
| BstBAI | YACGTR | 1 cut(s) | 524 |
| BstC8I | GCNNGC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 4 cut(s) | 65, 423, 627, 746 |
| BstDSI | CCRYGG | 1 cut(s) | 573 |
| BstF5I | GGATG | 4 cut(s) | 97, 644, 795, 850 |
| BstH2I | RGCGCY | 1 cut(s) | 573 |
| BstHHI | GCGC | 3 cut(s) | 186, 409, 572 |
| BstKTI | GATC | 3 cut(s) | 87, 369, 674 |
| BstMAI | GTCTC | 2 cut(s) | 284, 786 |
| BstMBI | GATC | 3 cut(s) | 84, 366, 671 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 413 |
| BstNSI | RCATGY | 2 cut(s) | 23, 658 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 657 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstSLI | GKGCMC | 2 cut(s) | 625, 840 |
| Bsu15I | ATCGAT | 1 cut(s) | 664 |
| Bsu36I | CCTNAGG | 1 cut(s) | 746 |
| BsuI | GTATCC | 1 cut(s) | 493 |
| BsuRI | GGCC | 1 cut(s) | 551 |
| BsuTUI | ATCGAT | 1 cut(s) | 664 |
| BtgI | CCRYGG | 1 cut(s) | 573 |
| BtsCI | GGATG | 4 cut(s) | 97, 644, 795, 850 |
| BtsIMutI | CAGTG | 1 cut(s) | 345 |
| BveI | ACCTGC | 1 cut(s) | 477 |
| Cac8I | GCNNGC | 1 cut(s) | 21 |
| CfoI | GCGC | 3 cut(s) | 186, 409, 572 |
| Cfr13I | GGNCC | 2 cut(s) | 452, 549 |
| ClaI | ATCGAT | 1 cut(s) | 664 |
| Csp6I | GTAC | 2 cut(s) | 6, 763 |
| CviAII | CATG | 4 cut(s) | 20, 244, 574, 655 |
| CviJI | RGCY | 9 cut(s) | 29, 103, 115, 227, 320, 385, 551, 719, 824 |
| CviKI_1 | RGCY | 9 cut(s) | 29, 103, 115, 227, 320, 385, 551, 719, 824 |
| CviQI | GTAC | 2 cut(s) | 6, 763 |
| DdeI | CTNAG | 4 cut(s) | 65, 423, 627, 746 |
| DinI | GGCGCC | 1 cut(s) | 571 |
| DpnI | GATC | 3 cut(s) | 86, 368, 673 |
| DpnII | GATC | 3 cut(s) | 84, 366, 671 |
| DraIII | CACNNNGTG | 2 cut(s) | 509, 620 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 450 |
| DriI | GACNNNNNGTC | 1 cut(s) | 266 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 450 |
| Eam1104I | CTCTTC | 2 cut(s) | 155, 234 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 266 |
| EarI | CTCTTC | 2 cut(s) | 155, 234 |
| Eco130I | CCWWGG | 2 cut(s) | 573, 602 |
| Eco47I | GGWCC | 1 cut(s) | 452 |
| Eco57I | CTGAAG | 1 cut(s) | 369 |
| Eco72I | CACGTG | 1 cut(s) | 524 |
| Eco81I | CCTNAGG | 1 cut(s) | 746 |
| EcoT14I | CCWWGG | 2 cut(s) | 573, 602 |
| EgeI | GGCGCC | 1 cut(s) | 571 |
| EheI | GGCGCC | 1 cut(s) | 571 |
| ErhI | CCWWGG | 2 cut(s) | 573, 602 |
| FaeI | CATG | 4 cut(s) | 23, 247, 577, 658 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 750, 782 |
| FaqI | GGGAC | 1 cut(s) | 456 |
| FatI | CATG | 4 cut(s) | 19, 243, 573, 654 |
| FauNDI | CATATG | 1 cut(s) | 51 |
| Fnu4HI | GCNGC | 1 cut(s) | 849 |
| FokI | GGATG | 4 cut(s) | 104, 651, 782, 857 |
| Fsp4HI | GCNGC | 1 cut(s) | 849 |
| FspBI | CTAG | 4 cut(s) | 116, 402, 603, 716 |
| GlaI | GCGC | 3 cut(s) | 185, 408, 571 |
| GluI | GCNGC | 1 cut(s) | 849 |
| HaeII | RGCGCY | 1 cut(s) | 573 |
| HaeIII | GGCC | 1 cut(s) | 551 |
| HhaI | GCGC | 3 cut(s) | 186, 409, 572 |
| Hin1I | GRCGYC | 1 cut(s) | 570 |
| Hin1II | CATG | 4 cut(s) | 23, 247, 577, 658 |
| Hin6I | GCGC | 3 cut(s) | 184, 407, 570 |
| HinP1I | GCGC | 3 cut(s) | 184, 407, 570 |
| HinfI | GANTC | 1 cut(s) | 143 |
| HphI | GGTGA | 1 cut(s) | 796 |
| Hpy166II | GTNNAC | 5 cut(s) | 8, 260, 623, 763, 838 |
| Hpy188I | TCNGA | 2 cut(s) | 68, 223 |
| Hpy188III | TCNNGA | 3 cut(s) | 37, 370, 723 |
| Hpy8I | GTNNAC | 5 cut(s) | 8, 260, 623, 763, 838 |
| HpyAV | CCTTC | 2 cut(s) | 157, 316 |
| HpyCH4III | ACNGT | 1 cut(s) | 240 |
| HpyCH4IV | ACGT | 3 cut(s) | 445, 523, 619 |
| HpyCH4V | TGCA | 6 cut(s) | 43, 95, 623, 642, 699, 838 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 413 |
| HpyF3I | CTNAG | 4 cut(s) | 65, 423, 627, 746 |
| HpySE526I | ACGT | 3 cut(s) | 445, 523, 619 |
| Hsp92I | GRCGYC | 1 cut(s) | 570 |
| Hsp92II | CATG | 4 cut(s) | 23, 247, 577, 658 |
| HspAI | GCGC | 3 cut(s) | 184, 407, 570 |
| KasI | GGCGCC | 1 cut(s) | 569 |
| Kzo9I | GATC | 3 cut(s) | 84, 366, 671 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LmnI | GCTCC | 2 cut(s) | 413, 751 |
| LpnPI | CCDG | 5 cut(s) | 279, 345, 472, 724, 758 |
| LweI | GCATC | 4 cut(s) | 30, 82, 629, 835 |
| MaeI | CTAG | 4 cut(s) | 116, 402, 603, 716 |
| MaeII | ACGT | 3 cut(s) | 445, 523, 619 |
| MaeIII | GTNAC | 1 cut(s) | 268 |
| MalI | GATC | 3 cut(s) | 86, 368, 673 |
| MboI | GATC | 3 cut(s) | 84, 366, 671 |
| MboII | GAAGA | 6 cut(s) | 131, 142, 221, 785, 788, 791 |
| MhlI | GDGCHC | 2 cut(s) | 625, 840 |
| MluCI | AATT | 3 cut(s) | 217, 285, 859 |
| Mly113I | GGCGCC | 1 cut(s) | 570 |
| MnlI | CCTC | 9 cut(s) | 158, 243, 366, 524, 560, 609, 636, 741, 805 |
| MroXI | GAANNNNTTC | 1 cut(s) | 228 |
| MseI | TTAA | 3 cut(s) | 198, 632, 858 |
| MslI | CAYNNNNRTG | 2 cut(s) | 666, 843 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 413 |
| NarI | GGCGCC | 1 cut(s) | 570 |
| NcoI | CCATGG | 1 cut(s) | 573 |
| NdeI | CATATG | 1 cut(s) | 51 |
| NdeII | GATC | 3 cut(s) | 84, 366, 671 |
| NlaIII | CATG | 4 cut(s) | 23, 247, 577, 658 |
| NlaIV | GGNNCC | 5 cut(s) | 453, 550, 571, 592, 743 |
| NmuCI | GTSAC | 1 cut(s) | 268 |
| NspI | RCATGY | 2 cut(s) | 23, 658 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PciI | ACATGT | 1 cut(s) | 654 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 616 |
| PdmI | GAANNNNTTC | 1 cut(s) | 228 |
| PfeI | GAWTC | 1 cut(s) | 143 |
| PkrI | GCNGC | 1 cut(s) | 850 |
| PluTI | GGCGCC | 1 cut(s) | 573 |
| PmaCI | CACGTG | 1 cut(s) | 524 |
| PmlI | CACGTG | 1 cut(s) | 524 |
| Ppu21I | YACGTR | 1 cut(s) | 524 |
| PscI | ACATGT | 1 cut(s) | 654 |
| PshAI | GACNNNNGTC | 1 cut(s) | 657 |
| PspCI | CACGTG | 1 cut(s) | 524 |
| PspN4I | GGNNCC | 5 cut(s) | 453, 550, 571, 592, 743 |
| PspPI | GGNCC | 2 cut(s) | 452, 549 |
| RsaI | GTAC | 2 cut(s) | 7, 764 |
| RsaNI | GTAC | 2 cut(s) | 6, 763 |
| RseI | CAYNNNNRTG | 2 cut(s) | 666, 843 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 3 cut(s) | 198, 632, 858 |
| SatI | GCNGC | 1 cut(s) | 849 |
| Sau3AI | GATC | 3 cut(s) | 84, 366, 671 |
| Sau96I | GGNCC | 2 cut(s) | 452, 549 |
| SduI | GDGCHC | 2 cut(s) | 625, 840 |
| SfaNI | GCATC | 4 cut(s) | 30, 82, 629, 835 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| SfoI | GGCGCC | 1 cut(s) | 571 |
| SinI | GGWCC | 1 cut(s) | 452 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 666, 843 |
| SmlI | CTYRAG | 1 cut(s) | 24 |
| SmoI | CTYRAG | 1 cut(s) | 24 |
| SphI | GCATGC | 1 cut(s) | 23 |
| Sse9I | AATT | 3 cut(s) | 217, 285, 859 |
| SsiI | CCGC | 5 cut(s) | 343, 463, 484, 497, 849 |
| SspDI | GGCGCC | 1 cut(s) | 569 |
| SspMI | CTAG | 4 cut(s) | 116, 402, 603, 716 |
| StyI | CCWWGG | 2 cut(s) | 573, 602 |
| TaaI | ACNGT | 1 cut(s) | 240 |
| TaiI | ACGT | 3 cut(s) | 448, 526, 622 |
| TaqI | TCGA | 2 cut(s) | 83, 664 |
| TasI | AATT | 3 cut(s) | 217, 285, 859 |
| TauI | GCSGC | 1 cut(s) | 851 |
| TfiI | GAWTC | 1 cut(s) | 143 |
| Tru1I | TTAA | 3 cut(s) | 198, 632, 858 |
| Tru9I | TTAA | 3 cut(s) | 198, 632, 858 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TseFI | GTSAC | 1 cut(s) | 268 |
| Tsp45I | GTSAC | 1 cut(s) | 268 |
| TspDTI | ATGAA | 2 cut(s) | 368, 846 |
| TspGWI | ACGGA | 1 cut(s) | 379 |
| TspRI | CASTG | 1 cut(s) | 352 |
| VneI | GTGCAC | 2 cut(s) | 621, 836 |
| VpaK11BI | GGWCC | 1 cut(s) | 452 |
| XceI | RCATGY | 2 cut(s) | 23, 658 |
| XmaJI | CCTAGG | 1 cut(s) | 602 |
| XmnI | GAANNNNTTC | 1 cut(s) | 228 |
| XspI | CTAG | 4 cut(s) | 116, 402, 603, 716 |