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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 297 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 570 |
| AccB1I | GGYRCC | 1 cut(s) | 473 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 830 |
| AccII | CGCG | 1 cut(s) | 143 |
| AciI | CCGC | 2 cut(s) | 265, 660 |
| AclI | AACGTT | 1 cut(s) | 216 |
| AclWI | GGATC | 1 cut(s) | 822 |
| AcoI | YGGCCR | 1 cut(s) | 340 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 166, 592, 830 |
| AflII | CTTAAG | 1 cut(s) | 16 |
| AflIII | ACRYGT | 1 cut(s) | 640 |
| AgsI | TTSAA | 2 cut(s) | 280, 414 |
| AluBI | AGCT | 6 cut(s) | 82, 104, 184, 308, 466, 488 |
| AluI | AGCT | 6 cut(s) | 82, 104, 184, 308, 466, 488 |
| Alw21I | GWGCWC | 3 cut(s) | 68, 468, 622 |
| Alw26I | GTCTC | 2 cut(s) | 327, 400 |
| Alw44I | GTGCAC | 1 cut(s) | 618 |
| AlwI | GGATC | 1 cut(s) | 822 |
| AoxI | GGCC | 1 cut(s) | 340 |
| ApaLI | GTGCAC | 1 cut(s) | 618 |
| ApeKI | GCWGC | 1 cut(s) | 202 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 309 |
| AspLEI | GCGC | 1 cut(s) | 145 |
| AspS9I | GGNCC | 1 cut(s) | 572 |
| AsuHPI | GGTGA | 2 cut(s) | 596, 794 |
| AvaII | GGWCC | 1 cut(s) | 572 |
| BaeGI | GKGCMC | 1 cut(s) | 622 |
| BalI | TGGCCA | 1 cut(s) | 342 |
| BanI | GGYRCC | 1 cut(s) | 473 |
| BanII | GRGCYC | 1 cut(s) | 468 |
| BbsI | GAAGAC | 3 cut(s) | 177, 380, 810 |
| Bbv12I | GWGCWC | 3 cut(s) | 68, 468, 622 |
| BbvI | GCAGC | 1 cut(s) | 214 |
| BccI | CCATC | 5 cut(s) | 19, 49, 246, 322, 773 |
| BcoDI | GTCTC | 2 cut(s) | 327, 400 |
| BfaI | CTAG | 3 cut(s) | 53, 528, 788 |
| BfrI | CTTAAG | 1 cut(s) | 16 |
| BglII | AGATCT | 1 cut(s) | 790 |
| BisI | GCNGC | 1 cut(s) | 203 |
| BlsI | GCNGC | 1 cut(s) | 204 |
| Bme18I | GGWCC | 1 cut(s) | 572 |
| BmgT120I | GGNCC | 1 cut(s) | 572 |
| BmiI | GGNNCC | 3 cut(s) | 475, 626, 664 |
| BpiI | GAAGAC | 3 cut(s) | 177, 380, 810 |
| BpuEI | CTTGAG | 1 cut(s) | 218 |
| BsaBI | GATNNNNATC | 3 cut(s) | 365, 783, 789 |
| BsaJI | CCNNGG | 3 cut(s) | 534, 628, 673 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 166, 592, 830 |
| Bse8I | GATNNNNATC | 3 cut(s) | 365, 783, 789 |
| BseDI | CCNNGG | 3 cut(s) | 534, 628, 673 |
| BseJI | GATNNNNATC | 3 cut(s) | 365, 783, 789 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 166, 592, 830 |
| BseSI | GKGCMC | 1 cut(s) | 622 |
| BseXI | GCAGC | 1 cut(s) | 214 |
| BsgI | GTGCAG | 1 cut(s) | 384 |
| Bsh1236I | CGCG | 1 cut(s) | 143 |
| BshFI | GGCC | 1 cut(s) | 342 |
| BshNI | GGYRCC | 1 cut(s) | 473 |
| BsiHKAI | GWGCWC | 3 cut(s) | 68, 468, 622 |
| BslFI | GGGAC | 1 cut(s) | 566 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 166, 592, 830 |
| BsmAI | GTCTC | 2 cut(s) | 327, 400 |
| BsmBI | CGTCTC | 1 cut(s) | 400 |
| BsmFI | GGGAC | 1 cut(s) | 566 |
| BsnI | GGCC | 1 cut(s) | 342 |
| Bsp1286I | GDGCHC | 3 cut(s) | 68, 468, 622 |
| Bsp143I | GATC | 5 cut(s) | 366, 772, 784, 790, 814 |
| Bsp19I | CCATGG | 1 cut(s) | 673 |
| BspACI | CCGC | 2 cut(s) | 265, 660 |
| BspANI | GGCC | 1 cut(s) | 342 |
| BspFNI | CGCG | 1 cut(s) | 143 |
| BspHI | TCATGA | 2 cut(s) | 120, 460 |
| BspLI | GGNNCC | 3 cut(s) | 475, 626, 664 |
| BspPI | GGATC | 1 cut(s) | 822 |
| BspQI | GCTCTTC | 1 cut(s) | 315 |
| BspT107I | GGYRCC | 1 cut(s) | 473 |
| BspTI | CTTAAG | 1 cut(s) | 16 |
| BssECI | CCNNGG | 3 cut(s) | 534, 628, 673 |
| BssMI | GATC | 5 cut(s) | 366, 772, 784, 790, 814 |
| BssT1I | CCWWGG | 1 cut(s) | 673 |
| Bst4CI | ACNGT | 1 cut(s) | 629 |
| Bst6I | CTCTTC | 2 cut(s) | 315, 641 |
| BstAFI | CTTAAG | 1 cut(s) | 16 |
| BstC8I | GCNNGC | 3 cut(s) | 80, 618, 688 |
| BstDEI | CTNAG | 3 cut(s) | 45, 543, 794 |
| BstDSI | CCRYGG | 3 cut(s) | 534, 628, 673 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 164 |
| BstFNI | CGCG | 1 cut(s) | 143 |
| BstHHI | GCGC | 1 cut(s) | 145 |
| BstKTI | GATC | 5 cut(s) | 369, 775, 787, 793, 817 |
| BstMAI | GTCTC | 2 cut(s) | 327, 400 |
| BstMBI | GATC | 5 cut(s) | 366, 772, 784, 790, 814 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 749 |
| BstSLI | GKGCMC | 1 cut(s) | 622 |
| BstUI | CGCG | 1 cut(s) | 143 |
| BstV1I | GCAGC | 1 cut(s) | 214 |
| BstV2I | GAAGAC | 3 cut(s) | 177, 380, 810 |
| BstX2I | RGATCY | 1 cut(s) | 790 |
| BstYI | RGATCY | 1 cut(s) | 790 |
| BsuRI | GGCC | 1 cut(s) | 342 |
| BtgI | CCRYGG | 3 cut(s) | 534, 628, 673 |
| BtgZI | GCGATG | 1 cut(s) | 265 |
| BtsI | GCAGTG | 1 cut(s) | 227 |
| BtsIMutI | CAGTG | 2 cut(s) | 227, 401 |
| Cac8I | GCNNGC | 3 cut(s) | 80, 618, 688 |
| CciI | TCATGA | 2 cut(s) | 120, 460 |
| CfoI | GCGC | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 1 cut(s) | 572 |
| CseI | GACGC | 1 cut(s) | 149 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 7 cut(s) | 121, 133, 461, 478, 497, 674, 760 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 3 cut(s) | 45, 543, 794 |
| DpnI | GATC | 5 cut(s) | 368, 774, 786, 792, 816 |
| DpnII | GATC | 5 cut(s) | 366, 772, 784, 790, 814 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 570 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 570 |
| EaeI | YGGCCR | 1 cut(s) | 340 |
| Eam1104I | CTCTTC | 2 cut(s) | 315, 641 |
| EarI | CTCTTC | 2 cut(s) | 315, 641 |
| Ecl136II | GAGCTC | 1 cut(s) | 466 |
| Eco130I | CCWWGG | 1 cut(s) | 673 |
| Eco24I | GRGCYC | 1 cut(s) | 468 |
| Eco47I | GGWCC | 1 cut(s) | 572 |
| Eco53kI | GAGCTC | 1 cut(s) | 466 |
| EcoICRI | GAGCTC | 1 cut(s) | 466 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 164 |
| EcoT14I | CCWWGG | 1 cut(s) | 673 |
| EcoT38I | GRGCYC | 1 cut(s) | 468 |
| ErhI | CCWWGG | 1 cut(s) | 673 |
| Esp3I | CGTCTC | 1 cut(s) | 400 |
| FaeI | CATG | 7 cut(s) | 124, 136, 464, 481, 500, 677, 763 |
| FaqI | GGGAC | 1 cut(s) | 566 |
| FatI | CATG | 7 cut(s) | 120, 132, 460, 477, 496, 673, 759 |
| Fnu4HI | GCNGC | 1 cut(s) | 203 |
| FriOI | GRGCYC | 1 cut(s) | 468 |
| Fsp4HI | GCNGC | 1 cut(s) | 203 |
| FspBI | CTAG | 3 cut(s) | 53, 528, 788 |
| GlaI | GCGC | 1 cut(s) | 144 |
| GluI | GCNGC | 1 cut(s) | 203 |
| HaeIII | GGCC | 1 cut(s) | 342 |
| HgaI | GACGC | 1 cut(s) | 149 |
| HhaI | GCGC | 1 cut(s) | 145 |
| Hin1II | CATG | 7 cut(s) | 124, 136, 464, 481, 500, 677, 763 |
| Hin6I | GCGC | 1 cut(s) | 143 |
| HinP1I | GCGC | 1 cut(s) | 143 |
| HincII | GTYRAC | 1 cut(s) | 638 |
| HindII | GTYRAC | 1 cut(s) | 638 |
| HinfI | GANTC | 2 cut(s) | 224, 376 |
| HphI | GGTGA | 2 cut(s) | 596, 794 |
| Hpy166II | GTNNAC | 2 cut(s) | 620, 638 |
| Hpy188I | TCNGA | 5 cut(s) | 59, 304, 327, 426, 670 |
| Hpy8I | GTNNAC | 2 cut(s) | 620, 638 |
| HpyAV | CCTTC | 2 cut(s) | 397, 590 |
| HpyCH4III | ACNGT | 1 cut(s) | 629 |
| HpyCH4IV | ACGT | 5 cut(s) | 62, 216, 445, 483, 640 |
| HpyCH4V | TGCA | 4 cut(s) | 401, 440, 620, 716 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 749 |
| HpyF3I | CTNAG | 3 cut(s) | 45, 543, 794 |
| HpySE526I | ACGT | 5 cut(s) | 62, 216, 445, 483, 640 |
| Hsp92II | CATG | 7 cut(s) | 124, 136, 464, 481, 500, 677, 763 |
| HspAI | GCGC | 1 cut(s) | 143 |
| Kzo9I | GATC | 5 cut(s) | 366, 772, 784, 790, 814 |
| LguI | GCTCTTC | 1 cut(s) | 315 |
| LmnI | GCTCC | 1 cut(s) | 150 |
| LpnPI | CCDG | 7 cut(s) | 19, 249, 426, 546, 700, 719, 837 |
| Lsp1109I | GCAGC | 1 cut(s) | 214 |
| MaeI | CTAG | 3 cut(s) | 53, 528, 788 |
| MaeII | ACGT | 5 cut(s) | 62, 216, 445, 483, 640 |
| MaeIII | GTNAC | 1 cut(s) | 680 |
| MalI | GATC | 5 cut(s) | 368, 774, 786, 792, 816 |
| MboI | GATC | 5 cut(s) | 366, 772, 784, 790, 814 |
| MboII | GAAGA | 7 cut(s) | 182, 302, 385, 526, 658, 782, 815 |
| MflI | RGATCY | 1 cut(s) | 790 |
| MhlI | GDGCHC | 3 cut(s) | 68, 468, 622 |
| MlsI | TGGCCA | 1 cut(s) | 342 |
| MluCI | AATT | 5 cut(s) | 114, 418, 556, 754, 828 |
| MluNI | TGGCCA | 1 cut(s) | 342 |
| MlyI | GAGTC | 1 cut(s) | 370 |
| MmeI | TCCRAC | 1 cut(s) | 693 |
| MnlI | CCTC | 7 cut(s) | 160, 170, 272, 586, 606, 626, 676 |
| Mox20I | TGGCCA | 1 cut(s) | 342 |
| MroXI | GAANNNNTTC | 1 cut(s) | 309 |
| MscI | TGGCCA | 1 cut(s) | 342 |
| MseI | TTAA | 2 cut(s) | 17, 318 |
| MslI | CAYNNNNRTG | 1 cut(s) | 135 |
| Msp20I | TGGCCA | 1 cut(s) | 342 |
| MspCI | CTTAAG | 1 cut(s) | 16 |
| MvnI | CGCG | 1 cut(s) | 143 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 749 |
| NcoI | CCATGG | 1 cut(s) | 673 |
| NdeII | GATC | 5 cut(s) | 366, 772, 784, 790, 814 |
| NlaIII | CATG | 7 cut(s) | 124, 136, 464, 481, 500, 677, 763 |
| NlaIV | GGNNCC | 3 cut(s) | 475, 626, 664 |
| PagI | TCATGA | 2 cut(s) | 120, 460 |
| PciSI | GCTCTTC | 1 cut(s) | 315 |
| PdmI | GAANNNNTTC | 1 cut(s) | 309 |
| PfeI | GAWTC | 1 cut(s) | 224 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 830 |
| PkrI | GCNGC | 1 cut(s) | 204 |
| PleI | GAGTC | 1 cut(s) | 370 |
| PpsI | GAGTC | 1 cut(s) | 370 |
| PsiI | TTATAA | 1 cut(s) | 297 |
| Psp124BI | GAGCTC | 1 cut(s) | 468 |
| Psp1406I | AACGTT | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 3 cut(s) | 475, 626, 664 |
| PspPI | GGNCC | 1 cut(s) | 572 |
| PsuI | RGATCY | 1 cut(s) | 790 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 1 cut(s) | 135 |
| SacI | GAGCTC | 1 cut(s) | 468 |
| SapI | GCTCTTC | 1 cut(s) | 315 |
| SaqAI | TTAA | 2 cut(s) | 17, 318 |
| SatI | GCNGC | 1 cut(s) | 203 |
| Sau3AI | GATC | 5 cut(s) | 366, 772, 784, 790, 814 |
| Sau96I | GGNCC | 1 cut(s) | 572 |
| SchI | GAGTC | 1 cut(s) | 370 |
| SduI | GDGCHC | 3 cut(s) | 68, 468, 622 |
| SinI | GGWCC | 1 cut(s) | 572 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 135 |
| SmlI | CTYRAG | 2 cut(s) | 16, 197 |
| SmoI | CTYRAG | 2 cut(s) | 16, 197 |
| Sse9I | AATT | 5 cut(s) | 114, 418, 556, 754, 828 |
| SsiI | CCGC | 2 cut(s) | 265, 660 |
| SspI | AATATT | 1 cut(s) | 505 |
| SspMI | CTAG | 3 cut(s) | 53, 528, 788 |
| SstI | GAGCTC | 1 cut(s) | 468 |
| StyI | CCWWGG | 1 cut(s) | 673 |
| TaaI | ACNGT | 1 cut(s) | 629 |
| TaiI | ACGT | 5 cut(s) | 65, 219, 448, 486, 643 |
| TaqI | TCGA | 1 cut(s) | 369 |
| TasI | AATT | 5 cut(s) | 114, 418, 556, 754, 828 |
| TfiI | GAWTC | 1 cut(s) | 224 |
| Tru1I | TTAA | 2 cut(s) | 17, 318 |
| Tru9I | TTAA | 2 cut(s) | 17, 318 |
| TscAI | CASTG | 2 cut(s) | 234, 408 |
| TseI | GCWGC | 1 cut(s) | 202 |
| TspDTI | ATGAA | 4 cut(s) | 149, 168, 449, 494 |
| TspGWI | ACGGA | 1 cut(s) | 637 |
| TspRI | CASTG | 2 cut(s) | 234, 408 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 830 |
| Vha464I | CTTAAG | 1 cut(s) | 16 |
| VneI | GTGCAC | 1 cut(s) | 618 |
| VpaK11BI | GGWCC | 1 cut(s) | 572 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 164 |
| XbaI | TCTAGA | 1 cut(s) | 787 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 183 |
| XmnI | GAANNNNTTC | 1 cut(s) | 309 |
| XspI | CTAG | 3 cut(s) | 53, 528, 788 |