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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 393, 438 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 501 |
| Acc36I | ACCTGC | 1 cut(s) | 528 |
| AccB1I | GGYRCC | 3 cut(s) | 599, 620, 641 |
| AccBSI | CCGCTC | 1 cut(s) | 466 |
| AciI | CCGC | 4 cut(s) | 295, 466, 514, 535 |
| AclWI | GGATC | 2 cut(s) | 326, 730 |
| AcsI | RAATTY | 1 cut(s) | 246 |
| AcuI | CTGAAG | 3 cut(s) | 252, 321, 798 |
| AcvI | CACGTG | 1 cut(s) | 557 |
| AcyI | GRCGYC | 3 cut(s) | 7, 621, 642 |
| AdeI | CACNNNGTG | 1 cut(s) | 560 |
| AfaI | GTAC | 1 cut(s) | 24 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 452, 453, 523, 576, 655 |
| AflIII | ACRYGT | 2 cut(s) | 554, 705 |
| AgsI | TTSAA | 5 cut(s) | 115, 122, 151, 399, 772 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 218 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 294, 326 |
| AluBI | AGCT | 6 cut(s) | 64, 179, 235, 337, 359, 776 |
| AluI | AGCT | 6 cut(s) | 64, 179, 235, 337, 359, 776 |
| Alw21I | GWGCWC | 1 cut(s) | 792 |
| Alw26I | GTCTC | 1 cut(s) | 684 |
| Alw44I | GTGCAC | 1 cut(s) | 788 |
| AlwI | GGATC | 2 cut(s) | 326, 730 |
| ApaLI | GTGCAC | 1 cut(s) | 788 |
| ApeKI | GCWGC | 1 cut(s) | 800 |
| ApoI | RAATTY | 1 cut(s) | 246 |
| AspA2I | CCTAGG | 1 cut(s) | 653 |
| AspLEI | GCGC | 4 cut(s) | 138, 459, 623, 644 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 2 cut(s) | 626, 748 |
| AvaII | GGWCC | 1 cut(s) | 503 |
| AvrII | CCTAGG | 1 cut(s) | 653 |
| BaeGI | GKGCMC | 1 cut(s) | 792 |
| BanI | GGYRCC | 3 cut(s) | 599, 620, 641 |
| BanII | GRGCYC | 1 cut(s) | 78 |
| BauI | CACGAG | 1 cut(s) | 322 |
| BbrPI | CACGTG | 1 cut(s) | 557 |
| Bbv12I | GWGCWC | 1 cut(s) | 792 |
| BbvI | GCAGC | 1 cut(s) | 787 |
| BccI | CCATC | 1 cut(s) | 731 |
| BcoDI | GTCTC | 1 cut(s) | 684 |
| BfaI | CTAG | 1 cut(s) | 654 |
| BfmI | CTRYAG | 3 cut(s) | 188, 354, 801 |
| BfoI | RGCGCY | 2 cut(s) | 624, 645 |
| BfuAI | ACCTGC | 1 cut(s) | 528 |
| BisI | GCNGC | 1 cut(s) | 801 |
| BlnI | CCTAGG | 1 cut(s) | 653 |
| BlsI | GCNGC | 1 cut(s) | 802 |
| Bme18I | GGWCC | 1 cut(s) | 503 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 218 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmiI | GGNNCC | 5 cut(s) | 470, 504, 601, 622, 643 |
| BmsI | GCATC | 2 cut(s) | 43, 787 |
| BoxI | GACNNNNGTC | 1 cut(s) | 708 |
| Bsa29I | ATCGAT | 1 cut(s) | 715 |
| BsaAI | YACGTR | 1 cut(s) | 557 |
| BsaBI | GATNNNNATC | 2 cut(s) | 721, 750 |
| BsaHI | GRCGYC | 3 cut(s) | 7, 621, 642 |
| BsaJI | CCNNGG | 3 cut(s) | 603, 624, 653 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 571, 601 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 452, 453, 523, 576, 655 |
| Bse3DI | GCAATG | 1 cut(s) | 571 |
| Bse8I | GATNNNNATC | 2 cut(s) | 721, 750 |
| BseCI | ATCGAT | 1 cut(s) | 715 |
| BseDI | CCNNGG | 3 cut(s) | 603, 624, 653 |
| BseGI | GGATG | 2 cut(s) | 58, 802 |
| BseJI | GATNNNNATC | 2 cut(s) | 721, 750 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 452, 453, 523, 576, 655 |
| BseMI | GCAATG | 1 cut(s) | 571 |
| BseMII | CTCAG | 2 cut(s) | 40, 351 |
| BseRI | GAGGAG | 1 cut(s) | 443 |
| BseSI | GKGCMC | 1 cut(s) | 792 |
| BseXI | GCAGC | 1 cut(s) | 787 |
| BsgI | GTGCAG | 1 cut(s) | 567 |
| BshNI | GGYRCC | 3 cut(s) | 599, 620, 641 |
| BshVI | ATCGAT | 1 cut(s) | 715 |
| BsiHKAI | GWGCWC | 1 cut(s) | 792 |
| BslFI | GGGAC | 1 cut(s) | 507 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 452, 453, 523, 576, 655 |
| BsmAI | GTCTC | 1 cut(s) | 684 |
| BsmFI | GGGAC | 1 cut(s) | 507 |
| BsmI | GAATGC | 1 cut(s) | 665 |
| Bsp1286I | GDGCHC | 2 cut(s) | 78, 792 |
| Bsp143I | GATC | 3 cut(s) | 45, 318, 722 |
| Bsp19I | CCATGG | 1 cut(s) | 624 |
| BspACI | CCGC | 4 cut(s) | 295, 466, 514, 535 |
| BspCNI | CTCAG | 2 cut(s) | 39, 352 |
| BspDI | ATCGAT | 1 cut(s) | 715 |
| BspHI | TCATGA | 1 cut(s) | 424 |
| BspLI | GGNNCC | 5 cut(s) | 470, 504, 601, 622, 643 |
| BspMAI | CTGCAG | 1 cut(s) | 805 |
| BspMI | ACCTGC | 1 cut(s) | 528 |
| BspPI | GGATC | 2 cut(s) | 326, 730 |
| BspT107I | GGYRCC | 3 cut(s) | 599, 620, 641 |
| BsrBI | CCGCTC | 1 cut(s) | 466 |
| BsrDI | GCAATG | 1 cut(s) | 571 |
| BssECI | CCNNGG | 3 cut(s) | 603, 624, 653 |
| BssMI | GATC | 3 cut(s) | 45, 318, 722 |
| BssNI | GRCGYC | 3 cut(s) | 7, 621, 642 |
| BssSI | CACGAG | 1 cut(s) | 322 |
| BssT1I | CCWWGG | 3 cut(s) | 603, 624, 653 |
| Bst2BI | CACGAG | 1 cut(s) | 322 |
| Bst4CI | ACNGT | 1 cut(s) | 192 |
| BstACI | GRCGYC | 3 cut(s) | 7, 621, 642 |
| BstBAI | YACGTR | 1 cut(s) | 557 |
| BstDEI | CTNAG | 3 cut(s) | 26, 360, 474 |
| BstDSI | CCRYGG | 1 cut(s) | 624 |
| BstF5I | GGATG | 2 cut(s) | 58, 802 |
| BstH2I | RGCGCY | 2 cut(s) | 624, 645 |
| BstHHI | GCGC | 4 cut(s) | 138, 459, 623, 644 |
| BstKTI | GATC | 3 cut(s) | 48, 321, 725 |
| BstMAI | GTCTC | 1 cut(s) | 684 |
| BstMBI | GATC | 3 cut(s) | 45, 318, 722 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 463 |
| BstNSI | RCATGY | 1 cut(s) | 709 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 708 |
| BstSFI | CTRYAG | 3 cut(s) | 188, 354, 801 |
| BstSLI | GKGCMC | 1 cut(s) | 792 |
| BstV1I | GCAGC | 1 cut(s) | 787 |
| Bsu15I | ATCGAT | 1 cut(s) | 715 |
| BsuTUI | ATCGAT | 1 cut(s) | 715 |
| BtgI | CCRYGG | 1 cut(s) | 624 |
| BtsCI | GGATG | 2 cut(s) | 58, 802 |
| BtsIMutI | CAGTG | 1 cut(s) | 297 |
| BveI | ACCTGC | 1 cut(s) | 528 |
| CciI | TCATGA | 1 cut(s) | 424 |
| CfoI | GCGC | 4 cut(s) | 138, 459, 623, 644 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| ClaI | ATCGAT | 1 cut(s) | 715 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 1 cut(s) | 23 |
| CviAII | CATG | 7 cut(s) | 196, 368, 425, 571, 611, 625, 706 |
| CviQI | GTAC | 1 cut(s) | 23 |
| DdeI | CTNAG | 3 cut(s) | 26, 360, 474 |
| DinI | GGCGCC | 2 cut(s) | 622, 643 |
| DpnI | GATC | 3 cut(s) | 47, 320, 724 |
| DpnII | GATC | 3 cut(s) | 45, 318, 722 |
| DraIII | CACNNNGTG | 1 cut(s) | 560 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 501 |
| DriI | GACNNNNNGTC | 1 cut(s) | 218 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 501 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 218 |
| Eco130I | CCWWGG | 3 cut(s) | 603, 624, 653 |
| Eco24I | GRGCYC | 1 cut(s) | 78 |
| Eco47I | GGWCC | 1 cut(s) | 503 |
| Eco57I | CTGAAG | 3 cut(s) | 252, 321, 798 |
| Eco72I | CACGTG | 1 cut(s) | 557 |
| EcoT14I | CCWWGG | 3 cut(s) | 603, 624, 653 |
| EcoT38I | GRGCYC | 1 cut(s) | 78 |
| EgeI | GGCGCC | 2 cut(s) | 622, 643 |
| EheI | GGCGCC | 2 cut(s) | 622, 643 |
| ErhI | CCWWGG | 3 cut(s) | 603, 624, 653 |
| FaeI | CATG | 7 cut(s) | 199, 371, 428, 574, 614, 628, 709 |
| FaqI | GGGAC | 1 cut(s) | 507 |
| FatI | CATG | 7 cut(s) | 195, 367, 424, 570, 610, 624, 705 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 801 |
| FokI | GGATG | 2 cut(s) | 65, 809 |
| FriOI | GRGCYC | 1 cut(s) | 78 |
| Fsp4HI | GCNGC | 1 cut(s) | 801 |
| FspBI | CTAG | 1 cut(s) | 654 |
| GlaI | GCGC | 4 cut(s) | 137, 458, 622, 643 |
| GluI | GCNGC | 1 cut(s) | 801 |
| HaeII | RGCGCY | 2 cut(s) | 624, 645 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 4 cut(s) | 138, 459, 623, 644 |
| Hin1I | GRCGYC | 3 cut(s) | 7, 621, 642 |
| Hin1II | CATG | 7 cut(s) | 199, 371, 428, 574, 614, 628, 709 |
| Hin6I | GCGC | 4 cut(s) | 136, 457, 621, 642 |
| HinP1I | GCGC | 4 cut(s) | 136, 457, 621, 642 |
| HinfI | GANTC | 1 cut(s) | 95 |
| HphI | GGTGA | 2 cut(s) | 626, 748 |
| Hpy166II | GTNNAC | 2 cut(s) | 212, 790 |
| Hpy188I | TCNGA | 3 cut(s) | 29, 109, 175 |
| Hpy188III | TCNNGA | 2 cut(s) | 322, 425 |
| Hpy8I | GTNNAC | 2 cut(s) | 212, 790 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 5 cut(s) | 109, 109, 268, 521, 611 |
| HpyCH4III | ACNGT | 1 cut(s) | 192 |
| HpyCH4IV | ACGT | 2 cut(s) | 496, 556 |
| HpyCH4V | TGCA | 6 cut(s) | 56, 443, 548, 674, 790, 803 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 463 |
| HpyF3I | CTNAG | 3 cut(s) | 26, 360, 474 |
| HpySE526I | ACGT | 2 cut(s) | 496, 556 |
| Hsp92I | GRCGYC | 3 cut(s) | 7, 621, 642 |
| Hsp92II | CATG | 7 cut(s) | 199, 371, 428, 574, 614, 628, 709 |
| HspAI | GCGC | 4 cut(s) | 136, 457, 621, 642 |
| KasI | GGCGCC | 2 cut(s) | 620, 641 |
| Kzo9I | GATC | 3 cut(s) | 45, 318, 722 |
| LmnI | GCTCC | 1 cut(s) | 463 |
| LpnPI | CCDG | 2 cut(s) | 231, 523 |
| Lsp1109I | GCAGC | 1 cut(s) | 787 |
| LweI | GCATC | 2 cut(s) | 43, 787 |
| MaeI | CTAG | 1 cut(s) | 654 |
| MaeII | ACGT | 2 cut(s) | 496, 556 |
| MaeIII | GTNAC | 1 cut(s) | 220 |
| MalI | GATC | 3 cut(s) | 47, 320, 724 |
| MbiI | CCGCTC | 1 cut(s) | 466 |
| MboI | GATC | 3 cut(s) | 45, 318, 722 |
| MboII | GAAGA | 3 cut(s) | 743, 746, 791 |
| MhlI | GDGCHC | 2 cut(s) | 78, 792 |
| MluCI | AATT | 8 cut(s) | 145, 169, 237, 246, 388, 394, 433, 680 |
| Mly113I | GGCGCC | 2 cut(s) | 621, 642 |
| MmeI | TCCRAC | 1 cut(s) | 292 |
| MseI | TTAA | 1 cut(s) | 683 |
| MslI | CAYNNNNRTG | 3 cut(s) | 380, 717, 795 |
| Mva1269I | GAATGC | 1 cut(s) | 665 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 463 |
| NarI | GGCGCC | 2 cut(s) | 621, 642 |
| NcoI | CCATGG | 1 cut(s) | 624 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 45, 318, 722 |
| NlaIII | CATG | 7 cut(s) | 199, 371, 428, 574, 614, 628, 709 |
| NlaIV | GGNNCC | 5 cut(s) | 470, 504, 601, 622, 643 |
| NmuCI | GTSAC | 1 cut(s) | 220 |
| NspI | RCATGY | 1 cut(s) | 709 |
| PagI | TCATGA | 1 cut(s) | 424 |
| PciI | ACATGT | 1 cut(s) | 705 |
| PctI | GAATGC | 1 cut(s) | 665 |
| PfeI | GAWTC | 1 cut(s) | 95 |
| PkrI | GCNGC | 1 cut(s) | 802 |
| PluTI | GGCGCC | 2 cut(s) | 624, 645 |
| PmaCI | CACGTG | 1 cut(s) | 557 |
| PmlI | CACGTG | 1 cut(s) | 557 |
| Ppu21I | YACGTR | 1 cut(s) | 557 |
| PscI | ACATGT | 1 cut(s) | 705 |
| PshAI | GACNNNNGTC | 1 cut(s) | 708 |
| PsiI | TTATAA | 2 cut(s) | 393, 438 |
| PspCI | CACGTG | 1 cut(s) | 557 |
| PspN4I | GGNNCC | 5 cut(s) | 470, 504, 601, 622, 643 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| PstI | CTGCAG | 1 cut(s) | 805 |
| RsaI | GTAC | 1 cut(s) | 24 |
| RsaNI | GTAC | 1 cut(s) | 23 |
| RseI | CAYNNNNRTG | 3 cut(s) | 380, 717, 795 |
| SaqAI | TTAA | 1 cut(s) | 683 |
| SatI | GCNGC | 1 cut(s) | 801 |
| Sau3AI | GATC | 3 cut(s) | 45, 318, 722 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SduI | GDGCHC | 2 cut(s) | 78, 792 |
| SfaNI | GCATC | 2 cut(s) | 43, 787 |
| SfcI | CTRYAG | 3 cut(s) | 188, 354, 801 |
| SfoI | GGCGCC | 2 cut(s) | 622, 643 |
| SinI | GGWCC | 1 cut(s) | 503 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 380, 717, 795 |
| Sse9I | AATT | 8 cut(s) | 145, 169, 237, 246, 388, 394, 433, 680 |
| SsiI | CCGC | 4 cut(s) | 295, 466, 514, 535 |
| SspDI | GGCGCC | 2 cut(s) | 620, 641 |
| SspMI | CTAG | 1 cut(s) | 654 |
| StyI | CCWWGG | 3 cut(s) | 603, 624, 653 |
| TaaI | ACNGT | 1 cut(s) | 192 |
| TaiI | ACGT | 2 cut(s) | 499, 559 |
| TaqI | TCGA | 2 cut(s) | 44, 715 |
| TasI | AATT | 8 cut(s) | 145, 169, 237, 246, 388, 394, 433, 680 |
| TfiI | GAWTC | 1 cut(s) | 95 |
| Tru1I | TTAA | 1 cut(s) | 683 |
| Tru9I | TTAA | 1 cut(s) | 683 |
| TscAI | CASTG | 1 cut(s) | 304 |
| TseFI | GTSAC | 1 cut(s) | 220 |
| TseI | GCWGC | 1 cut(s) | 800 |
| Tsp45I | GTSAC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 3 cut(s) | 320, 413, 798 |
| TspGWI | ACGGA | 1 cut(s) | 331 |
| TspRI | CASTG | 1 cut(s) | 304 |
| VneI | GTGCAC | 1 cut(s) | 788 |
| VpaK11BI | GGWCC | 1 cut(s) | 503 |
| XapI | RAATTY | 1 cut(s) | 246 |
| XceI | RCATGY | 1 cut(s) | 709 |
| XmaJI | CCTAGG | 1 cut(s) | 653 |
| XspI | CTAG | 1 cut(s) | 654 |