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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 165 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 234, 485 |
| Acc65I | GGTACC | 1 cut(s) | 340 |
| AccB1I | GGYRCC | 2 cut(s) | 322, 340 |
| AccBSI | CCGCTC | 1 cut(s) | 196 |
| AccII | CGCG | 1 cut(s) | 271 |
| AciI | CCGC | 6 cut(s) | 196, 247, 269, 326, 344, 503 |
| AcoI | YGGCCR | 1 cut(s) | 298 |
| AcuI | CTGAAG | 1 cut(s) | 480 |
| AcvI | CACGTG | 1 cut(s) | 287 |
| AcyI | GRCGYC | 1 cut(s) | 323 |
| AfaI | GTAC | 1 cut(s) | 342 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 256 |
| AflIII | ACRYGT | 2 cut(s) | 229, 284 |
| AgsI | TTSAA | 3 cut(s) | 122, 152, 511 |
| AjiI | CACGTC | 1 cut(s) | 230 |
| AluBI | AGCT | 2 cut(s) | 403, 458 |
| AluI | AGCT | 2 cut(s) | 403, 458 |
| Alw26I | GTCTC | 2 cut(s) | 55, 57 |
| AoxI | GGCC | 1 cut(s) | 298 |
| ApeKI | GCWGC | 2 cut(s) | 403, 455 |
| Asp718I | GGTACC | 1 cut(s) | 340 |
| AspLEI | GCGC | 2 cut(s) | 173, 325 |
| AspS9I | GGNCC | 2 cut(s) | 46, 236 |
| AsuHPI | GGTGA | 1 cut(s) | 100 |
| AvaII | GGWCC | 2 cut(s) | 46, 236 |
| BalI | TGGCCA | 1 cut(s) | 300 |
| BanI | GGYRCC | 2 cut(s) | 322, 340 |
| BbrPI | CACGTG | 1 cut(s) | 287 |
| BbvI | GCAGC | 2 cut(s) | 390, 467 |
| BccI | CCATC | 2 cut(s) | 176, 464 |
| BcoDI | GTCTC | 2 cut(s) | 55, 57 |
| BfaI | CTAG | 1 cut(s) | 359 |
| BfoI | RGCGCY | 1 cut(s) | 326 |
| BisI | GCNGC | 3 cut(s) | 326, 404, 456 |
| BlsI | GCNGC | 3 cut(s) | 327, 405, 457 |
| Bme18I | GGWCC | 2 cut(s) | 46, 236 |
| BmgBI | CACGTC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 2 cut(s) | 46, 236 |
| BmiI | GGNNCC | 5 cut(s) | 48, 200, 237, 324, 342 |
| BmsI | GCATC | 3 cut(s) | 105, 182, 517 |
| BsaAI | YACGTR | 1 cut(s) | 287 |
| BsaHI | GRCGYC | 1 cut(s) | 323 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 256 |
| Bse118I | RCCGGY | 2 cut(s) | 319, 328 |
| Bse3DI | GCAATG | 2 cut(s) | 498, 526 |
| BseGI | GGATG | 2 cut(s) | 10, 353 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 256 |
| BseMI | GCAATG | 2 cut(s) | 498, 526 |
| BseXI | GCAGC | 2 cut(s) | 390, 467 |
| BsgI | GTGCAG | 1 cut(s) | 389 |
| Bsh1236I | CGCG | 1 cut(s) | 271 |
| BshFI | GGCC | 1 cut(s) | 300 |
| BshNI | GGYRCC | 2 cut(s) | 322, 340 |
| BsiSI | CCGG | 2 cut(s) | 320, 329 |
| BslFI | GGGAC | 3 cut(s) | 31, 86, 228 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 256 |
| BsmAI | GTCTC | 2 cut(s) | 55, 57 |
| BsmBI | CGTCTC | 1 cut(s) | 57 |
| BsmFI | GGGAC | 3 cut(s) | 31, 86, 228 |
| BsmI | GAATGC | 1 cut(s) | 388 |
| BsnI | GGCC | 1 cut(s) | 300 |
| BspACI | CCGC | 6 cut(s) | 196, 247, 269, 326, 344, 503 |
| BspANI | GGCC | 1 cut(s) | 300 |
| BspFNI | CGCG | 1 cut(s) | 271 |
| BspLI | GGNNCC | 5 cut(s) | 48, 200, 237, 324, 342 |
| BspT107I | GGYRCC | 2 cut(s) | 322, 340 |
| BsrBI | CCGCTC | 1 cut(s) | 196 |
| BsrDI | GCAATG | 2 cut(s) | 498, 526 |
| BsrFI | RCCGGY | 2 cut(s) | 319, 328 |
| BssAI | RCCGGY | 2 cut(s) | 319, 328 |
| BssNI | GRCGYC | 1 cut(s) | 323 |
| Bst6I | CTCTTC | 1 cut(s) | 4 |
| BstACI | GRCGYC | 1 cut(s) | 323 |
| BstBAI | YACGTR | 1 cut(s) | 287 |
| BstDEI | CTNAG | 1 cut(s) | 141 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 38 |
| BstF5I | GGATG | 2 cut(s) | 10, 353 |
| BstFNI | CGCG | 1 cut(s) | 271 |
| BstH2I | RGCGCY | 1 cut(s) | 326 |
| BstHHI | GCGC | 2 cut(s) | 173, 325 |
| BstMAI | GTCTC | 2 cut(s) | 55, 57 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 193, 277, 297, 452 |
| BstUI | CGCG | 1 cut(s) | 271 |
| BstV1I | GCAGC | 2 cut(s) | 390, 467 |
| BsuRI | GGCC | 1 cut(s) | 300 |
| BtrI | CACGTC | 1 cut(s) | 230 |
| BtsCI | GGATG | 2 cut(s) | 10, 353 |
| CfoI | GCGC | 2 cut(s) | 173, 325 |
| Cfr10I | RCCGGY | 2 cut(s) | 319, 328 |
| Cfr13I | GGNCC | 2 cut(s) | 46, 236 |
| Csp6I | GTAC | 1 cut(s) | 341 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 520 |
| CviAII | CATG | 2 cut(s) | 56, 440 |
| CviJI | RGCY | 5 cut(s) | 130, 300, 403, 446, 458 |
| CviKI_1 | RGCY | 5 cut(s) | 130, 300, 403, 446, 458 |
| CviQI | GTAC | 1 cut(s) | 341 |
| DdeI | CTNAG | 1 cut(s) | 141 |
| DinI | GGCGCC | 1 cut(s) | 324 |
| DraI | TTTAAA | 1 cut(s) | 423 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 234, 485 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 234, 485 |
| EaeI | YGGCCR | 1 cut(s) | 298 |
| Eam1104I | CTCTTC | 1 cut(s) | 4 |
| EarI | CTCTTC | 1 cut(s) | 4 |
| Eco47I | GGWCC | 2 cut(s) | 46, 236 |
| Eco57I | CTGAAG | 1 cut(s) | 480 |
| Eco72I | CACGTG | 1 cut(s) | 287 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 38 |
| EgeI | GGCGCC | 1 cut(s) | 324 |
| EheI | GGCGCC | 1 cut(s) | 324 |
| Esp3I | CGTCTC | 1 cut(s) | 57 |
| FaeI | CATG | 2 cut(s) | 59, 443 |
| FaiI | YATR | 7 cut(s) | 39, 57, 165, 241, 431, 441, 516 |
| FaqI | GGGAC | 3 cut(s) | 31, 86, 228 |
| FatI | CATG | 2 cut(s) | 55, 439 |
| Fnu4HI | GCNGC | 3 cut(s) | 326, 404, 456 |
| FokI | GGATG | 2 cut(s) | 17, 340 |
| Fsp4HI | GCNGC | 3 cut(s) | 326, 404, 456 |
| FspBI | CTAG | 1 cut(s) | 359 |
| GlaI | GCGC | 2 cut(s) | 172, 324 |
| GluI | GCNGC | 3 cut(s) | 326, 404, 456 |
| HaeII | RGCGCY | 1 cut(s) | 326 |
| HaeIII | GGCC | 1 cut(s) | 300 |
| HapII | CCGG | 2 cut(s) | 320, 329 |
| HhaI | GCGC | 2 cut(s) | 173, 325 |
| Hin1I | GRCGYC | 1 cut(s) | 323 |
| Hin1II | CATG | 2 cut(s) | 59, 443 |
| Hin6I | GCGC | 2 cut(s) | 171, 323 |
| HinP1I | GCGC | 2 cut(s) | 171, 323 |
| HpaII | CCGG | 2 cut(s) | 320, 329 |
| HphI | GGTGA | 1 cut(s) | 100 |
| Hpy166II | GTNNAC | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 1 cut(s) | 152 |
| Hpy8I | GTNNAC | 1 cut(s) | 46 |
| HpyAV | CCTTC | 2 cut(s) | 79, 455 |
| HpyCH4IV | ACGT | 4 cut(s) | 229, 286, 304, 486 |
| HpyCH4V | TGCA | 2 cut(s) | 376, 406 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 193, 277, 297, 452 |
| HpyF3I | CTNAG | 1 cut(s) | 141 |
| HpySE526I | ACGT | 4 cut(s) | 229, 286, 304, 486 |
| Hsp92I | GRCGYC | 1 cut(s) | 323 |
| Hsp92II | CATG | 2 cut(s) | 59, 443 |
| HspAI | GCGC | 2 cut(s) | 171, 323 |
| KasI | GGCGCC | 1 cut(s) | 322 |
| KpnI | GGTACC | 1 cut(s) | 344 |
| LmnI | GCTCC | 1 cut(s) | 193 |
| LpnPI | CCDG | 2 cut(s) | 333, 342 |
| Lsp1109I | GCAGC | 2 cut(s) | 390, 467 |
| LweI | GCATC | 3 cut(s) | 105, 182, 517 |
| MaeI | CTAG | 1 cut(s) | 359 |
| MaeII | ACGT | 4 cut(s) | 229, 286, 304, 486 |
| MbiI | CCGCTC | 1 cut(s) | 196 |
| MboII | GAAGA | 2 cut(s) | 21, 374 |
| MlsI | TGGCCA | 1 cut(s) | 300 |
| MluCI | AATT | 2 cut(s) | 21, 160 |
| MluNI | TGGCCA | 1 cut(s) | 300 |
| Mly113I | GGCGCC | 1 cut(s) | 323 |
| MmeI | TCCRAC | 1 cut(s) | 115 |
| MnlI | CCTC | 6 cut(s) | 7, 34, 90, 148, 305, 436 |
| Mox20I | TGGCCA | 1 cut(s) | 300 |
| MscI | TGGCCA | 1 cut(s) | 300 |
| MseI | TTAA | 2 cut(s) | 422, 544 |
| MslI | CAYNNNNRTG | 1 cut(s) | 381 |
| Msp20I | TGGCCA | 1 cut(s) | 300 |
| MspA1I | CMGCKG | 1 cut(s) | 458 |
| MspI | CCGG | 2 cut(s) | 320, 329 |
| Mva1269I | GAATGC | 1 cut(s) | 388 |
| MvnI | CGCG | 1 cut(s) | 271 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 193, 277, 297, 452 |
| NarI | GGCGCC | 1 cut(s) | 323 |
| NlaIII | CATG | 2 cut(s) | 59, 443 |
| NlaIV | GGNNCC | 5 cut(s) | 48, 200, 237, 324, 342 |
| PctI | GAATGC | 1 cut(s) | 388 |
| PkrI | GCNGC | 3 cut(s) | 327, 405, 457 |
| PluTI | GGCGCC | 1 cut(s) | 326 |
| PmaCI | CACGTG | 1 cut(s) | 287 |
| PmlI | CACGTG | 1 cut(s) | 287 |
| Ppu21I | YACGTR | 1 cut(s) | 287 |
| PsiI | TTATAA | 1 cut(s) | 165 |
| PspCI | CACGTG | 1 cut(s) | 287 |
| PspN4I | GGNNCC | 5 cut(s) | 48, 200, 237, 324, 342 |
| PspPI | GGNCC | 2 cut(s) | 46, 236 |
| PvuII | CAGCTG | 1 cut(s) | 458 |
| RsaI | GTAC | 1 cut(s) | 342 |
| RsaNI | GTAC | 1 cut(s) | 341 |
| RseI | CAYNNNNRTG | 1 cut(s) | 381 |
| SaqAI | TTAA | 2 cut(s) | 422, 544 |
| SatI | GCNGC | 3 cut(s) | 326, 404, 456 |
| Sau96I | GGNCC | 2 cut(s) | 46, 236 |
| SetI | ASST | 9 cut(s) | 45, 90, 101, 232, 289, 307, 405, 460, 489 |
| SfaNI | GCATC | 3 cut(s) | 105, 182, 517 |
| SfoI | GGCGCC | 1 cut(s) | 324 |
| SinI | GGWCC | 2 cut(s) | 46, 236 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 381 |
| Sse9I | AATT | 2 cut(s) | 21, 160 |
| SsiI | CCGC | 6 cut(s) | 196, 247, 269, 326, 344, 503 |
| SspDI | GGCGCC | 1 cut(s) | 322 |
| SspMI | CTAG | 1 cut(s) | 359 |
| TaiI | ACGT | 4 cut(s) | 232, 289, 307, 489 |
| TaqI | TCGA | 1 cut(s) | 176 |
| TasI | AATT | 2 cut(s) | 21, 160 |
| TauI | GCSGC | 1 cut(s) | 328 |
| Tru1I | TTAA | 2 cut(s) | 422, 544 |
| Tru9I | TTAA | 2 cut(s) | 422, 544 |
| TseI | GCWGC | 2 cut(s) | 403, 455 |
| VpaK11BI | GGWCC | 2 cut(s) | 46, 236 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 38 |
| XspI | CTAG | 1 cut(s) | 359 |