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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccI | GTMKAC | 1 cut(s) | 646 |
| AciI | CCGC | 2 cut(s) | 145, 668 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AcoI | YGGCCR | 1 cut(s) | 613 |
| AcyI | GRCGYC | 1 cut(s) | 627 |
| AfaI | GTAC | 1 cut(s) | 168 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 464, 535, 667 |
| AluBI | AGCT | 1 cut(s) | 346 |
| AluI | AGCT | 1 cut(s) | 346 |
| Alw21I | GWGCWC | 1 cut(s) | 565 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| Alw44I | GTGCAC | 1 cut(s) | 561 |
| AoxI | GGCC | 2 cut(s) | 613, 727 |
| ApaLI | GTGCAC | 1 cut(s) | 561 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| AspS9I | GGNCC | 2 cut(s) | 52, 515 |
| AsuHPI | GGTGA | 2 cut(s) | 518, 635 |
| AvaII | GGWCC | 2 cut(s) | 52, 515 |
| BaeGI | GKGCMC | 1 cut(s) | 565 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BbsI | GAAGAC | 1 cut(s) | 698 |
| Bbv12I | GWGCWC | 1 cut(s) | 565 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 3 cut(s) | 126, 202, 711 |
| BclI | TGATCA | 1 cut(s) | 246 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 1 cut(s) | 57 |
| BfmI | CTRYAG | 1 cut(s) | 445 |
| BisI | GCNGC | 2 cut(s) | 83, 669 |
| BlsI | GCNGC | 2 cut(s) | 84, 670 |
| Bme18I | GGWCC | 2 cut(s) | 52, 515 |
| BmgT120I | GGNCC | 2 cut(s) | 52, 515 |
| BmiI | GGNNCC | 5 cut(s) | 54, 355, 421, 569, 684 |
| BoxI | GACNNNNGTC | 1 cut(s) | 642 |
| BpiI | GAAGAC | 1 cut(s) | 698 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 467, 499 |
| BpuEI | CTTGAG | 2 cut(s) | 98, 455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaHI | GRCGYC | 1 cut(s) | 627 |
| BsaJI | CCNNGG | 4 cut(s) | 414, 571, 616, 633 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 464, 535, 667 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseDI | CCNNGG | 4 cut(s) | 414, 571, 616, 633 |
| BseGI | GGATG | 1 cut(s) | 512 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 464, 535, 667 |
| BseSI | GKGCMC | 1 cut(s) | 565 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BsgI | GTGCAG | 1 cut(s) | 264 |
| BshFI | GGCC | 2 cut(s) | 615, 729 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 1 cut(s) | 565 |
| BsiSI | CCGG | 1 cut(s) | 612 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 464, 535, 667 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmI | GAATGC | 1 cut(s) | 322 |
| BsnI | GGCC | 2 cut(s) | 615, 729 |
| Bsp1286I | GDGCHC | 1 cut(s) | 565 |
| Bsp143I | GATC | 2 cut(s) | 246, 674 |
| Bsp19I | CCATGG | 1 cut(s) | 616 |
| BspACI | CCGC | 2 cut(s) | 145, 668 |
| BspANI | GGCC | 2 cut(s) | 615, 729 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 5 cut(s) | 54, 355, 421, 569, 684 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BssECI | CCNNGG | 4 cut(s) | 414, 571, 616, 633 |
| BssMI | GATC | 2 cut(s) | 246, 674 |
| BssNI | GRCGYC | 1 cut(s) | 627 |
| BssT1I | CCWWGG | 3 cut(s) | 414, 616, 633 |
| Bst4CI | ACNGT | 1 cut(s) | 572 |
| Bst6I | CTCTTC | 1 cut(s) | 584 |
| BstACI | GRCGYC | 1 cut(s) | 627 |
| BstC8I | GCNNGC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 2 cut(s) | 294, 486 |
| BstDSI | CCRYGG | 2 cut(s) | 571, 616 |
| BstF5I | GGATG | 1 cut(s) | 512 |
| BstKTI | GATC | 2 cut(s) | 249, 677 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 2 cut(s) | 246, 674 |
| BstNSI | RCATGY | 1 cut(s) | 739 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 642 |
| BstSFI | CTRYAG | 1 cut(s) | 445 |
| BstSLI | GKGCMC | 1 cut(s) | 565 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 1 cut(s) | 698 |
| BsuRI | GGCC | 2 cut(s) | 615, 729 |
| BtgI | CCRYGG | 2 cut(s) | 571, 616 |
| BtsCI | GGATG | 1 cut(s) | 512 |
| BtsIMutI | CAGTG | 2 cut(s) | 231, 281 |
| Cac8I | GCNNGC | 1 cut(s) | 561 |
| CciI | TCATGA | 1 cut(s) | 340 |
| Cfr13I | GGNCC | 2 cut(s) | 52, 515 |
| CseI | GACGC | 2 cut(s) | 29, 635 |
| Csp6I | GTAC | 1 cut(s) | 167 |
| CviAII | CATG | 5 cut(s) | 13, 341, 358, 617, 736 |
| CviJI | RGCY | 7 cut(s) | 141, 188, 346, 615, 671, 685, 729 |
| CviKI_1 | RGCY | 7 cut(s) | 141, 188, 346, 615, 671, 685, 729 |
| CviQI | GTAC | 1 cut(s) | 167 |
| DdeI | CTNAG | 2 cut(s) | 294, 486 |
| DpnI | GATC | 2 cut(s) | 248, 676 |
| DpnII | GATC | 2 cut(s) | 246, 674 |
| EaeI | YGGCCR | 1 cut(s) | 613 |
| Eam1104I | CTCTTC | 1 cut(s) | 584 |
| EarI | CTCTTC | 1 cut(s) | 584 |
| Eco130I | CCWWGG | 3 cut(s) | 414, 616, 633 |
| Eco47I | GGWCC | 2 cut(s) | 52, 515 |
| EcoO109I | RGGNCCY | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 3 cut(s) | 414, 616, 633 |
| ErhI | CCWWGG | 3 cut(s) | 414, 616, 633 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 16, 344, 361, 620, 739 |
| FatI | CATG | 5 cut(s) | 12, 340, 357, 616, 735 |
| FbaI | TGATCA | 1 cut(s) | 246 |
| FblI | GTMKAC | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 2 cut(s) | 83, 669 |
| FokI | GGATG | 1 cut(s) | 519 |
| Fsp4HI | GCNGC | 2 cut(s) | 83, 669 |
| FspBI | CTAG | 1 cut(s) | 57 |
| GluI | GCNGC | 2 cut(s) | 83, 669 |
| HaeIII | GGCC | 2 cut(s) | 615, 729 |
| HapII | CCGG | 1 cut(s) | 612 |
| HgaI | GACGC | 2 cut(s) | 29, 635 |
| Hin1I | GRCGYC | 1 cut(s) | 627 |
| Hin1II | CATG | 5 cut(s) | 16, 344, 361, 620, 739 |
| HincII | GTYRAC | 1 cut(s) | 647 |
| HindII | GTYRAC | 1 cut(s) | 647 |
| HinfI | GANTC | 4 cut(s) | 104, 155, 437, 468 |
| HpaII | CCGG | 1 cut(s) | 612 |
| HphI | GGTGA | 2 cut(s) | 518, 635 |
| Hpy166II | GTNNAC | 2 cut(s) | 563, 647 |
| Hpy188I | TCNGA | 1 cut(s) | 306 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 116, 250, 341, 434 |
| Hpy8I | GTNNAC | 2 cut(s) | 563, 647 |
| HpyAV | CCTTC | 2 cut(s) | 277, 533 |
| HpyCH4III | ACNGT | 1 cut(s) | 572 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 325 |
| HpyCH4V | TGCA | 3 cut(s) | 281, 320, 563 |
| HpyF3I | CTNAG | 2 cut(s) | 294, 486 |
| HpySE526I | ACGT | 2 cut(s) | 96, 325 |
| Hsp92I | GRCGYC | 1 cut(s) | 627 |
| Hsp92II | CATG | 5 cut(s) | 16, 344, 361, 620, 739 |
| Ksp22I | TGATCA | 1 cut(s) | 246 |
| Kzo9I | GATC | 2 cut(s) | 246, 674 |
| LmnI | GCTCC | 2 cut(s) | 475, 682 |
| LpnPI | CCDG | 5 cut(s) | 129, 306, 447, 625, 699 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 57 |
| MaeII | ACGT | 2 cut(s) | 96, 325 |
| MaeIII | GTNAC | 2 cut(s) | 101, 623 |
| MalI | GATC | 2 cut(s) | 248, 676 |
| MboI | GATC | 2 cut(s) | 246, 674 |
| MboII | GAAGA | 3 cut(s) | 406, 601, 698 |
| MhlI | GDGCHC | 1 cut(s) | 565 |
| MluCI | AATT | 3 cut(s) | 298, 499, 581 |
| MlyI | GAGTC | 3 cut(s) | 98, 446, 462 |
| MnlI | CCTC | 9 cut(s) | 152, 200, 281, 458, 529, 549, 569, 593, 619 |
| MseI | TTAA | 1 cut(s) | 42 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 621, 696 |
| MspI | CCGG | 1 cut(s) | 612 |
| Mva1269I | GAATGC | 1 cut(s) | 322 |
| NcoI | CCATGG | 1 cut(s) | 616 |
| NdeII | GATC | 2 cut(s) | 246, 674 |
| NlaIII | CATG | 5 cut(s) | 16, 344, 361, 620, 739 |
| NlaIV | GGNNCC | 5 cut(s) | 54, 355, 421, 569, 684 |
| NmuCI | GTSAC | 2 cut(s) | 101, 623 |
| NspI | RCATGY | 1 cut(s) | 739 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PctI | GAATGC | 1 cut(s) | 322 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PkrI | GCNGC | 2 cut(s) | 84, 670 |
| PleI | GAGTC | 3 cut(s) | 98, 445, 462 |
| PpsI | GAGTC | 3 cut(s) | 98, 445, 462 |
| PpuMI | RGGWCCY | 1 cut(s) | 52 |
| PshAI | GACNNNNGTC | 1 cut(s) | 642 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| Psp5II | RGGWCCY | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 5 cut(s) | 54, 355, 421, 569, 684 |
| PspPI | GGNCC | 2 cut(s) | 52, 515 |
| PspPPI | RGGWCCY | 1 cut(s) | 52 |
| RsaI | GTAC | 1 cut(s) | 168 |
| RsaNI | GTAC | 1 cut(s) | 167 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 621, 696 |
| SalI | GTCGAC | 1 cut(s) | 645 |
| SaqAI | TTAA | 1 cut(s) | 42 |
| SatI | GCNGC | 2 cut(s) | 83, 669 |
| Sau3AI | GATC | 2 cut(s) | 246, 674 |
| Sau96I | GGNCC | 2 cut(s) | 52, 515 |
| SchI | GAGTC | 3 cut(s) | 98, 446, 462 |
| SduI | GDGCHC | 1 cut(s) | 565 |
| SetI | ASST | 9 cut(s) | 42, 99, 269, 328, 338, 348, 580, 611, 652 |
| SfcI | CTRYAG | 1 cut(s) | 445 |
| SinI | GGWCC | 2 cut(s) | 52, 515 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 621, 696 |
| SmlI | CTYRAG | 2 cut(s) | 77, 470 |
| SmoI | CTYRAG | 2 cut(s) | 77, 470 |
| Sse9I | AATT | 3 cut(s) | 298, 499, 581 |
| SsiI | CCGC | 2 cut(s) | 145, 668 |
| SspMI | CTAG | 1 cut(s) | 57 |
| StyI | CCWWGG | 3 cut(s) | 414, 616, 633 |
| TaaI | ACNGT | 1 cut(s) | 572 |
| TaiI | ACGT | 2 cut(s) | 99, 328 |
| TaqI | TCGA | 2 cut(s) | 646, 673 |
| TasI | AATT | 3 cut(s) | 298, 499, 581 |
| TatI | WGTACW | 1 cut(s) | 166 |
| TauI | GCSGC | 1 cut(s) | 671 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| Tru1I | TTAA | 1 cut(s) | 42 |
| Tru9I | TTAA | 1 cut(s) | 42 |
| TscAI | CASTG | 2 cut(s) | 238, 288 |
| TseFI | GTSAC | 2 cut(s) | 101, 623 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 623 |
| TspDTI | ATGAA | 4 cut(s) | 29, 60, 329, 374 |
| TspGWI | ACGGA | 1 cut(s) | 580 |
| TspRI | CASTG | 2 cut(s) | 238, 288 |
| VneI | GTGCAC | 1 cut(s) | 561 |
| VpaK11BI | GGWCC | 2 cut(s) | 52, 515 |
| XceI | RCATGY | 1 cut(s) | 739 |
| XmiI | GTMKAC | 1 cut(s) | 646 |
| XspI | CTAG | 1 cut(s) | 57 |