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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 518, 593, 659 |
| AccBSI | CCGCTC | 1 cut(s) | 266 |
| AciI | CCGC | 6 cut(s) | 166, 266, 448, 597, 657, 663 |
| AcoI | YGGCCR | 1 cut(s) | 505 |
| AcyI | GRCGYC | 2 cut(s) | 519, 733 |
| AfaI | GTAC | 1 cut(s) | 225 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 623, 689 |
| AgsI | TTSAA | 2 cut(s) | 463, 556 |
| AjiI | CACGTC | 2 cut(s) | 27, 44 |
| AjnI | CCWGG | 2 cut(s) | 216, 728 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 375, 407 |
| AluBI | AGCT | 3 cut(s) | 242, 623, 689 |
| AluI | AGCT | 3 cut(s) | 242, 623, 689 |
| Alw26I | GTCTC | 1 cut(s) | 379 |
| Ama87I | CYCGRG | 1 cut(s) | 206 |
| AoxI | GGCC | 3 cut(s) | 180, 267, 505 |
| AspLEI | GCGC | 3 cut(s) | 40, 521, 562 |
| AspS9I | GGNCC | 1 cut(s) | 14 |
| AvaI | CYCGRG | 1 cut(s) | 206 |
| AvaII | GGWCC | 1 cut(s) | 14 |
| BalI | TGGCCA | 1 cut(s) | 507 |
| BanI | GGYRCC | 3 cut(s) | 518, 593, 659 |
| BbsI | GAAGAC | 1 cut(s) | 360 |
| BccI | CCATC | 8 cut(s) | 179, 302, 429, 546, 584, 647, 713, 745 |
| BciT130I | CCWGG | 2 cut(s) | 218, 730 |
| BciVI | GTATCC | 1 cut(s) | 190 |
| BcoDI | GTCTC | 1 cut(s) | 379 |
| BfaI | CTAG | 4 cut(s) | 213, 425, 618, 684 |
| BfoI | RGCGCY | 3 cut(s) | 41, 522, 563 |
| BfuI | GTATCC | 1 cut(s) | 190 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 275 |
| BisI | GCNGC | 2 cut(s) | 267, 658 |
| BlsI | GCNGC | 2 cut(s) | 268, 659 |
| Bme1390I | CCNGG | 2 cut(s) | 218, 730 |
| Bme18I | GGWCC | 1 cut(s) | 14 |
| BmeT110I | CYCGRG | 1 cut(s) | 206 |
| BmgBI | CACGTC | 2 cut(s) | 27, 44 |
| BmgT120I | GGNCC | 1 cut(s) | 14 |
| BmiI | GGNNCC | 4 cut(s) | 16, 520, 595, 661 |
| BmrFI | CCNGG | 2 cut(s) | 218, 730 |
| BmrI | ACTGGG | 1 cut(s) | 59 |
| BmsI | GCATC | 5 cut(s) | 41, 181, 538, 634, 700 |
| BmuI | ACTGGG | 1 cut(s) | 59 |
| BpiI | GAAGAC | 1 cut(s) | 360 |
| BpmI | CTGGAG | 1 cut(s) | 314 |
| Bpu10I | CCTNAGC | 1 cut(s) | 243 |
| BpuEI | CTTGAG | 1 cut(s) | 161 |
| BsaHI | GRCGYC | 2 cut(s) | 519, 733 |
| BsaI | GGTCTC | 1 cut(s) | 379 |
| BsaJI | CCNNGG | 3 cut(s) | 648, 714, 728 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 623, 689 |
| Bse118I | RCCGGY | 1 cut(s) | 53 |
| Bse1I | ACTGG | 3 cut(s) | 65, 136, 331 |
| Bse3DI | GCAATG | 1 cut(s) | 403 |
| BseBI | CCWGG | 2 cut(s) | 218, 730 |
| BseDI | CCNNGG | 3 cut(s) | 648, 714, 728 |
| BseGI | GGATG | 6 cut(s) | 46, 93, 297, 325, 658, 724 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 623, 689 |
| BseMI | GCAATG | 1 cut(s) | 403 |
| BseMII | CTCAG | 1 cut(s) | 257 |
| BseNI | ACTGG | 3 cut(s) | 65, 136, 331 |
| BshFI | GGCC | 3 cut(s) | 182, 269, 507 |
| BshNI | GGYRCC | 3 cut(s) | 518, 593, 659 |
| BsiHKCI | CYCGRG | 1 cut(s) | 206 |
| BsiSI | CCGG | 2 cut(s) | 54, 85 |
| BslFI | GGGAC | 2 cut(s) | 617, 683 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 623, 689 |
| BsmAI | GTCTC | 1 cut(s) | 379 |
| BsmFI | GGGAC | 2 cut(s) | 617, 683 |
| BsnI | GGCC | 3 cut(s) | 182, 269, 507 |
| Bso31I | GGTCTC | 1 cut(s) | 379 |
| BsoBI | CYCGRG | 1 cut(s) | 206 |
| Bsp19I | CCATGG | 2 cut(s) | 648, 714 |
| BspACI | CCGC | 6 cut(s) | 166, 266, 448, 597, 657, 663 |
| BspANI | GGCC | 3 cut(s) | 182, 269, 507 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspLI | GGNNCC | 4 cut(s) | 16, 520, 595, 661 |
| BspT107I | GGYRCC | 3 cut(s) | 518, 593, 659 |
| BspTNI | GGTCTC | 1 cut(s) | 379 |
| BsrBI | CCGCTC | 1 cut(s) | 266 |
| BsrDI | GCAATG | 1 cut(s) | 403 |
| BsrFI | RCCGGY | 1 cut(s) | 53 |
| BsrI | ACTGG | 3 cut(s) | 65, 136, 331 |
| BssAI | RCCGGY | 1 cut(s) | 53 |
| BssECI | CCNNGG | 3 cut(s) | 648, 714, 728 |
| BssNI | GRCGYC | 2 cut(s) | 519, 733 |
| BssT1I | CCWWGG | 2 cut(s) | 648, 714 |
| Bst2UI | CCWGG | 2 cut(s) | 218, 730 |
| Bst4CI | ACNGT | 1 cut(s) | 232 |
| BstACI | GRCGYC | 2 cut(s) | 519, 733 |
| BstC8I | GCNNGC | 4 cut(s) | 170, 240, 625, 691 |
| BstDEI | CTNAG | 3 cut(s) | 243, 271, 531 |
| BstDSI | CCRYGG | 2 cut(s) | 648, 714 |
| BstF5I | GGATG | 6 cut(s) | 46, 93, 297, 325, 658, 724 |
| BstH2I | RGCGCY | 3 cut(s) | 41, 522, 563 |
| BstHHI | GCGC | 3 cut(s) | 40, 521, 562 |
| BstMAI | GTCTC | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 29, 254, 263, 275, 284, 557 |
| BstNI | CCWGG | 2 cut(s) | 218, 730 |
| BstSCI | CCNGG | 2 cut(s) | 216, 728 |
| BstV2I | GAAGAC | 1 cut(s) | 360 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 515 |
| BsuI | GTATCC | 1 cut(s) | 190 |
| BsuRI | GGCC | 3 cut(s) | 182, 269, 507 |
| BtgI | CCRYGG | 2 cut(s) | 648, 714 |
| BtrI | CACGTC | 2 cut(s) | 27, 44 |
| BtsCI | GGATG | 6 cut(s) | 46, 93, 297, 325, 658, 724 |
| BtsI | GCAGTG | 1 cut(s) | 18 |
| BtsIMutI | CAGTG | 1 cut(s) | 18 |
| Cac8I | GCNNGC | 4 cut(s) | 170, 240, 625, 691 |
| CfoI | GCGC | 3 cut(s) | 40, 521, 562 |
| Cfr10I | RCCGGY | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 1 cut(s) | 14 |
| CseI | GACGC | 1 cut(s) | 722 |
| Csp6I | GTAC | 1 cut(s) | 224 |
| CviAII | CATG | 6 cut(s) | 509, 641, 649, 707, 715, 741 |
| CviQI | GTAC | 1 cut(s) | 224 |
| DdeI | CTNAG | 3 cut(s) | 243, 271, 531 |
| DinI | GGCGCC | 1 cut(s) | 520 |
| EaeI | YGGCCR | 1 cut(s) | 505 |
| EciI | GGCGGA | 1 cut(s) | 155 |
| Eco130I | CCWWGG | 2 cut(s) | 648, 714 |
| Eco31I | GGTCTC | 1 cut(s) | 379 |
| Eco32I | GATATC | 1 cut(s) | 163 |
| Eco47I | GGWCC | 1 cut(s) | 14 |
| Eco88I | CYCGRG | 1 cut(s) | 206 |
| EcoO109I | RGGNCCY | 1 cut(s) | 14 |
| EcoRII | CCWGG | 2 cut(s) | 216, 728 |
| EcoRV | GATATC | 1 cut(s) | 163 |
| EcoT14I | CCWWGG | 2 cut(s) | 648, 714 |
| EgeI | GGCGCC | 1 cut(s) | 520 |
| EheI | GGCGCC | 1 cut(s) | 520 |
| ErhI | CCWWGG | 2 cut(s) | 648, 714 |
| FaeI | CATG | 6 cut(s) | 512, 644, 652, 710, 718, 744 |
| FaqI | GGGAC | 2 cut(s) | 617, 683 |
| FatI | CATG | 6 cut(s) | 508, 640, 648, 706, 714, 740 |
| FauNDI | CATATG | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 2 cut(s) | 267, 658 |
| FokI | GGATG | 6 cut(s) | 33, 100, 284, 332, 665, 731 |
| Fsp4HI | GCNGC | 2 cut(s) | 267, 658 |
| FspBI | CTAG | 4 cut(s) | 213, 425, 618, 684 |
| GlaI | GCGC | 3 cut(s) | 39, 520, 561 |
| GluI | GCNGC | 2 cut(s) | 267, 658 |
| GsuI | CTGGAG | 1 cut(s) | 314 |
| HaeII | RGCGCY | 3 cut(s) | 41, 522, 563 |
| HaeIII | GGCC | 3 cut(s) | 182, 269, 507 |
| HapII | CCGG | 2 cut(s) | 54, 85 |
| HgaI | GACGC | 1 cut(s) | 722 |
| HhaI | GCGC | 3 cut(s) | 40, 521, 562 |
| Hin1I | GRCGYC | 2 cut(s) | 519, 733 |
| Hin1II | CATG | 6 cut(s) | 512, 644, 652, 710, 718, 744 |
| Hin6I | GCGC | 3 cut(s) | 38, 519, 560 |
| HinP1I | GCGC | 3 cut(s) | 38, 519, 560 |
| HincII | GTYRAC | 2 cut(s) | 70, 80 |
| HindII | GTYRAC | 2 cut(s) | 70, 80 |
| HinfI | GANTC | 4 cut(s) | 189, 202, 323, 407 |
| HpaII | CCGG | 2 cut(s) | 54, 85 |
| Hpy166II | GTNNAC | 5 cut(s) | 70, 80, 473, 607, 673 |
| Hpy188I | TCNGA | 1 cut(s) | 139 |
| Hpy188III | TCNNGA | 2 cut(s) | 158, 206 |
| Hpy8I | GTNNAC | 5 cut(s) | 70, 80, 473, 607, 673 |
| HpyCH4III | ACNGT | 1 cut(s) | 232 |
| HpyCH4IV | ACGT | 4 cut(s) | 26, 43, 222, 475 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 29, 254, 263, 275, 284, 557 |
| HpyF3I | CTNAG | 3 cut(s) | 243, 271, 531 |
| HpySE526I | ACGT | 4 cut(s) | 26, 43, 222, 475 |
| Hsp92I | GRCGYC | 2 cut(s) | 519, 733 |
| Hsp92II | CATG | 6 cut(s) | 512, 644, 652, 710, 718, 744 |
| HspAI | GCGC | 3 cut(s) | 38, 519, 560 |
| KasI | GGCGCC | 1 cut(s) | 518 |
| LmnI | GCTCC | 1 cut(s) | 121 |
| LweI | GCATC | 5 cut(s) | 41, 181, 538, 634, 700 |
| MaeI | CTAG | 4 cut(s) | 213, 425, 618, 684 |
| MaeII | ACGT | 4 cut(s) | 26, 43, 222, 475 |
| MaeIII | GTNAC | 1 cut(s) | 404 |
| MbiI | CCGCTC | 1 cut(s) | 266 |
| MboII | GAAGA | 3 cut(s) | 362, 365, 395 |
| MlsI | TGGCCA | 1 cut(s) | 507 |
| MluCI | AATT | 2 cut(s) | 59, 104 |
| MluNI | TGGCCA | 1 cut(s) | 507 |
| Mly113I | GGCGCC | 1 cut(s) | 519 |
| MlyI | GAGTC | 1 cut(s) | 401 |
| Mox20I | TGGCCA | 1 cut(s) | 507 |
| MscI | TGGCCA | 1 cut(s) | 507 |
| MslI | CAYNNNNRTG | 5 cut(s) | 302, 318, 513, 543, 742 |
| Msp20I | TGGCCA | 1 cut(s) | 507 |
| MspI | CCGG | 2 cut(s) | 54, 85 |
| MspR9I | CCNGG | 2 cut(s) | 218, 730 |
| MvaI | CCWGG | 2 cut(s) | 218, 730 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 29, 254, 263, 275, 284, 557 |
| NarI | GGCGCC | 1 cut(s) | 519 |
| NcoI | CCATGG | 2 cut(s) | 648, 714 |
| NdeI | CATATG | 1 cut(s) | 315 |
| NlaIII | CATG | 6 cut(s) | 512, 644, 652, 710, 718, 744 |
| NlaIV | GGNNCC | 4 cut(s) | 16, 520, 595, 661 |
| NmuCI | GTSAC | 1 cut(s) | 404 |
| PaeR7I | CTCGAG | 1 cut(s) | 206 |
| PfeI | GAWTC | 3 cut(s) | 189, 202, 323 |
| PkrI | GCNGC | 2 cut(s) | 268, 659 |
| PleI | GAGTC | 1 cut(s) | 401 |
| PluTI | GGCGCC | 1 cut(s) | 522 |
| PpsI | GAGTC | 1 cut(s) | 401 |
| PpuMI | RGGWCCY | 1 cut(s) | 14 |
| Psp5II | RGGWCCY | 1 cut(s) | 14 |
| Psp6I | CCWGG | 2 cut(s) | 216, 728 |
| PspGI | CCWGG | 2 cut(s) | 216, 728 |
| PspN4I | GGNNCC | 4 cut(s) | 16, 520, 595, 661 |
| PspPI | GGNCC | 1 cut(s) | 14 |
| PspPPI | RGGWCCY | 1 cut(s) | 14 |
| RsaI | GTAC | 1 cut(s) | 225 |
| RsaNI | GTAC | 1 cut(s) | 224 |
| RseI | CAYNNNNRTG | 5 cut(s) | 302, 318, 513, 543, 742 |
| SatI | GCNGC | 2 cut(s) | 267, 658 |
| Sau96I | GGNCC | 1 cut(s) | 14 |
| SchI | GAGTC | 1 cut(s) | 401 |
| ScrFI | CCNGG | 2 cut(s) | 218, 730 |
| SetI | ASST | 9 cut(s) | 29, 46, 225, 244, 426, 472, 478, 625, 691 |
| SfaNI | GCATC | 5 cut(s) | 41, 181, 538, 634, 700 |
| SfoI | GGCGCC | 1 cut(s) | 520 |
| Sfr274I | CTCGAG | 1 cut(s) | 206 |
| SinI | GGWCC | 1 cut(s) | 14 |
| SlaI | CTCGAG | 1 cut(s) | 206 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 302, 318, 513, 543, 742 |
| SmlI | CTYRAG | 2 cut(s) | 176, 206 |
| SmoI | CTYRAG | 2 cut(s) | 176, 206 |
| Sse9I | AATT | 2 cut(s) | 59, 104 |
| SsiI | CCGC | 6 cut(s) | 166, 266, 448, 597, 657, 663 |
| SspDI | GGCGCC | 1 cut(s) | 518 |
| SspMI | CTAG | 4 cut(s) | 213, 425, 618, 684 |
| StyD4I | CCNGG | 2 cut(s) | 216, 728 |
| StyI | CCWWGG | 2 cut(s) | 648, 714 |
| TaaI | ACNGT | 1 cut(s) | 232 |
| TaiI | ACGT | 4 cut(s) | 29, 46, 225, 478 |
| TaqI | TCGA | 3 cut(s) | 207, 381, 579 |
| TasI | AATT | 2 cut(s) | 59, 104 |
| TauI | GCSGC | 2 cut(s) | 269, 660 |
| TfiI | GAWTC | 3 cut(s) | 189, 202, 323 |
| TscAI | CASTG | 1 cut(s) | 25 |
| TseFI | GTSAC | 1 cut(s) | 404 |
| Tsp45I | GTSAC | 1 cut(s) | 404 |
| TspDTI | ATGAA | 1 cut(s) | 363 |
| TspGWI | ACGGA | 3 cut(s) | 392, 592, 658 |
| TspRI | CASTG | 1 cut(s) | 25 |
| VpaK11BI | GGWCC | 1 cut(s) | 14 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 620, 686 |
| XhoI | CTCGAG | 1 cut(s) | 206 |
| XspI | CTAG | 4 cut(s) | 213, 425, 618, 684 |