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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 187 |
| AcsI | RAATTY | 2 cut(s) | 6, 131 |
| AfaI | GTAC | 2 cut(s) | 36, 356 |
| AflII | CTTAAG | 1 cut(s) | 197 |
| AgsI | TTSAA | 3 cut(s) | 404, 484, 571 |
| AhlI | ACTAGT | 1 cut(s) | 329 |
| AjiI | CACGTC | 2 cut(s) | 55, 244 |
| AjnI | CCWGG | 2 cut(s) | 213, 237 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 396, 428 |
| AleI | CACNNNNGTG | 1 cut(s) | 474 |
| AluBI | AGCT | 2 cut(s) | 263, 269 |
| AluI | AGCT | 2 cut(s) | 263, 269 |
| Alw26I | GTCTC | 2 cut(s) | 400, 600 |
| Ama87I | CYCGRG | 1 cut(s) | 227 |
| AoxI | GGCC | 1 cut(s) | 175 |
| ApoI | RAATTY | 2 cut(s) | 6, 131 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 513 |
| AspS9I | GGNCC | 2 cut(s) | 66, 175 |
| AsuC2I | CCSGG | 1 cut(s) | 592 |
| AsuHPI | GGTGA | 1 cut(s) | 49 |
| AvaI | CYCGRG | 1 cut(s) | 227 |
| AvaII | GGWCC | 1 cut(s) | 66 |
| BanII | GRGCYC | 1 cut(s) | 46 |
| BccI | CCATC | 2 cut(s) | 200, 450 |
| BceAI | ACGGC | 1 cut(s) | 162 |
| BciT130I | CCWGG | 2 cut(s) | 215, 239 |
| BcnI | CCSGG | 1 cut(s) | 592 |
| BcoDI | GTCTC | 2 cut(s) | 400, 600 |
| BcuI | ACTAGT | 1 cut(s) | 329 |
| BfaI | CTAG | 4 cut(s) | 159, 234, 330, 446 |
| BfrI | CTTAAG | 1 cut(s) | 197 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 296 |
| Bme1390I | CCNGG | 3 cut(s) | 215, 239, 592 |
| Bme18I | GGWCC | 1 cut(s) | 66 |
| BmeT110I | CYCGRG | 1 cut(s) | 227 |
| BmgBI | CACGTC | 2 cut(s) | 55, 244 |
| BmgT120I | GGNCC | 2 cut(s) | 66, 175 |
| BmiI | GGNNCC | 3 cut(s) | 67, 68, 176 |
| BmrFI | CCNGG | 3 cut(s) | 215, 239, 592 |
| BmsI | GCATC | 2 cut(s) | 202, 550 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| Bpu10I | CCTNAGC | 1 cut(s) | 21 |
| BpuMI | CCSGG | 1 cut(s) | 592 |
| BsaI | GGTCTC | 2 cut(s) | 400, 600 |
| BsaJI | CCNNGG | 1 cut(s) | 61 |
| Bse1I | ACTGG | 2 cut(s) | 157, 352 |
| BseBI | CCWGG | 2 cut(s) | 215, 239 |
| BseDI | CCNNGG | 1 cut(s) | 61 |
| BseGI | GGATG | 2 cut(s) | 114, 318 |
| BseMII | CTCAG | 1 cut(s) | 12 |
| BseNI | ACTGG | 2 cut(s) | 157, 352 |
| BshFI | GGCC | 1 cut(s) | 177 |
| BsiHKCI | CYCGRG | 1 cut(s) | 227 |
| BsiSI | CCGG | 1 cut(s) | 592 |
| BslFI | GGGAC | 1 cut(s) | 79 |
| BsmAI | GTCTC | 2 cut(s) | 400, 600 |
| BsmFI | GGGAC | 1 cut(s) | 79 |
| BsnI | GGCC | 1 cut(s) | 177 |
| Bso31I | GGTCTC | 2 cut(s) | 400, 600 |
| BsoBI | CYCGRG | 1 cut(s) | 227 |
| Bsp1286I | GDGCHC | 1 cut(s) | 46 |
| Bsp143I | GATC | 2 cut(s) | 103, 552 |
| Bsp19I | CCATGG | 1 cut(s) | 61 |
| BspACI | CCGC | 1 cut(s) | 187 |
| BspANI | GGCC | 1 cut(s) | 177 |
| BspCNI | CTCAG | 1 cut(s) | 13 |
| BspLI | GGNNCC | 3 cut(s) | 67, 68, 176 |
| BspTI | CTTAAG | 1 cut(s) | 197 |
| BspTNI | GGTCTC | 2 cut(s) | 400, 600 |
| BsrI | ACTGG | 2 cut(s) | 157, 352 |
| BssECI | CCNNGG | 1 cut(s) | 61 |
| BssMI | GATC | 2 cut(s) | 103, 552 |
| BssT1I | CCWWGG | 1 cut(s) | 61 |
| Bst2UI | CCWGG | 2 cut(s) | 215, 239 |
| Bst4CI | ACNGT | 1 cut(s) | 340 |
| BstAFI | CTTAAG | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 2 cut(s) | 191, 261 |
| BstDEI | CTNAG | 2 cut(s) | 21, 292 |
| BstDSI | CCRYGG | 1 cut(s) | 61 |
| BstF5I | GGATG | 2 cut(s) | 114, 318 |
| BstKTI | GATC | 2 cut(s) | 106, 555 |
| BstMAI | GTCTC | 2 cut(s) | 400, 600 |
| BstMBI | GATC | 2 cut(s) | 103, 552 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 81, 98, 275, 296 |
| BstNI | CCWGG | 2 cut(s) | 215, 239 |
| BstSCI | CCNGG | 3 cut(s) | 213, 237, 590 |
| BsuRI | GGCC | 1 cut(s) | 177 |
| BtgI | CCRYGG | 1 cut(s) | 61 |
| BtgZI | GCGATG | 1 cut(s) | 578 |
| BtrI | CACGTC | 2 cut(s) | 55, 244 |
| BtsCI | GGATG | 2 cut(s) | 114, 318 |
| BtsI | GCAGTG | 1 cut(s) | 70 |
| BtsIMutI | CAGTG | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 2 cut(s) | 191, 261 |
| Cfr13I | GGNCC | 2 cut(s) | 66, 175 |
| CseI | GACGC | 1 cut(s) | 14 |
| Csp6I | GTAC | 2 cut(s) | 35, 355 |
| CviAII | CATG | 2 cut(s) | 62, 425 |
| CviQI | GTAC | 2 cut(s) | 35, 355 |
| DdeI | CTNAG | 2 cut(s) | 21, 292 |
| DpnI | GATC | 2 cut(s) | 105, 554 |
| DpnII | GATC | 2 cut(s) | 103, 552 |
| EciI | GGCGGA | 1 cut(s) | 176 |
| Eco130I | CCWWGG | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 1 cut(s) | 46 |
| Eco31I | GGTCTC | 2 cut(s) | 400, 600 |
| Eco32I | GATATC | 2 cut(s) | 164, 184 |
| Eco47I | GGWCC | 1 cut(s) | 66 |
| Eco88I | CYCGRG | 1 cut(s) | 227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 66 |
| EcoRII | CCWGG | 2 cut(s) | 213, 237 |
| EcoRV | GATATC | 2 cut(s) | 164, 184 |
| EcoT14I | CCWWGG | 1 cut(s) | 61 |
| EcoT38I | GRGCYC | 1 cut(s) | 46 |
| ErhI | CCWWGG | 1 cut(s) | 61 |
| FaeI | CATG | 2 cut(s) | 65, 428 |
| FaiI | YATR | 7 cut(s) | 63, 221, 336, 365, 426, 462, 541 |
| FaqI | GGGAC | 1 cut(s) | 79 |
| FatI | CATG | 2 cut(s) | 61, 424 |
| FokI | GGATG | 2 cut(s) | 121, 305 |
| FriOI | GRGCYC | 1 cut(s) | 46 |
| FspBI | CTAG | 4 cut(s) | 159, 234, 330, 446 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HaeIII | GGCC | 1 cut(s) | 177 |
| HapII | CCGG | 1 cut(s) | 592 |
| HgaI | GACGC | 1 cut(s) | 14 |
| Hin1II | CATG | 2 cut(s) | 65, 428 |
| HindIII | AAGCTT | 1 cut(s) | 267 |
| HinfI | GANTC | 4 cut(s) | 210, 344, 428, 576 |
| HpaII | CCGG | 1 cut(s) | 592 |
| HphI | GGTGA | 1 cut(s) | 49 |
| Hpy188I | TCNGA | 3 cut(s) | 30, 108, 508 |
| Hpy188III | TCNNGA | 3 cut(s) | 159, 440, 494 |
| HpyAV | CCTTC | 2 cut(s) | 378, 597 |
| HpyCH4III | ACNGT | 1 cut(s) | 340 |
| HpyCH4IV | ACGT | 3 cut(s) | 54, 243, 420 |
| HpyCH4V | TGCA | 1 cut(s) | 601 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 81, 98, 275, 296 |
| HpyF3I | CTNAG | 2 cut(s) | 21, 292 |
| HpySE526I | ACGT | 3 cut(s) | 54, 243, 420 |
| Hsp92II | CATG | 2 cut(s) | 65, 428 |
| KflI | GGGWCCC | 1 cut(s) | 66 |
| Kzo9I | GATC | 2 cut(s) | 103, 552 |
| LmnI | GCTCC | 2 cut(s) | 142, 354 |
| LweI | GCATC | 2 cut(s) | 202, 550 |
| MaeI | CTAG | 4 cut(s) | 159, 234, 330, 446 |
| MaeII | ACGT | 3 cut(s) | 54, 243, 420 |
| MaeIII | GTNAC | 2 cut(s) | 55, 113 |
| MalI | GATC | 2 cut(s) | 105, 554 |
| MboI | GATC | 2 cut(s) | 103, 552 |
| MboII | GAAGA | 1 cut(s) | 416 |
| MhlI | GDGCHC | 1 cut(s) | 46 |
| MluCI | AATT | 4 cut(s) | 6, 125, 131, 536 |
| MlyI | GAGTC | 2 cut(s) | 422, 570 |
| MnlI | CCTC | 3 cut(s) | 56, 289, 476 |
| MroXI | GAANNNNTTC | 1 cut(s) | 513 |
| MseI | TTAA | 4 cut(s) | 198, 255, 522, 530 |
| MslI | CAYNNNNRTG | 2 cut(s) | 323, 474 |
| MspCI | CTTAAG | 1 cut(s) | 197 |
| MspI | CCGG | 1 cut(s) | 592 |
| MspR9I | CCNGG | 3 cut(s) | 215, 239, 592 |
| MvaI | CCWGG | 2 cut(s) | 215, 239 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 81, 98, 275, 296 |
| NciI | CCSGG | 1 cut(s) | 592 |
| NcoI | CCATGG | 1 cut(s) | 61 |
| NdeII | GATC | 2 cut(s) | 103, 552 |
| NlaIII | CATG | 2 cut(s) | 65, 428 |
| NlaIV | GGNNCC | 3 cut(s) | 67, 68, 176 |
| NmuCI | GTSAC | 1 cut(s) | 55 |
| OliI | CACNNNNGTG | 1 cut(s) | 474 |
| PaeR7I | CTCGAG | 1 cut(s) | 227 |
| PdmI | GAANNNNTTC | 1 cut(s) | 513 |
| PfeI | GAWTC | 2 cut(s) | 210, 344 |
| PfoI | TCCNGGA | 1 cut(s) | 213 |
| PleI | GAGTC | 2 cut(s) | 422, 570 |
| PpsI | GAGTC | 2 cut(s) | 422, 570 |
| PpuMI | RGGWCCY | 1 cut(s) | 66 |
| Psp5II | RGGWCCY | 1 cut(s) | 66 |
| Psp6I | CCWGG | 2 cut(s) | 213, 237 |
| PspGI | CCWGG | 2 cut(s) | 213, 237 |
| PspN4I | GGNNCC | 3 cut(s) | 67, 68, 176 |
| PspPI | GGNCC | 2 cut(s) | 66, 175 |
| PspPPI | RGGWCCY | 1 cut(s) | 66 |
| PspXI | VCTCGAGB | 1 cut(s) | 227 |
| RsaI | GTAC | 2 cut(s) | 36, 356 |
| RsaNI | GTAC | 2 cut(s) | 35, 355 |
| RseI | CAYNNNNRTG | 2 cut(s) | 323, 474 |
| SaqAI | TTAA | 4 cut(s) | 198, 255, 522, 530 |
| Sau3AI | GATC | 2 cut(s) | 103, 552 |
| Sau96I | GGNCC | 2 cut(s) | 66, 175 |
| SchI | GAGTC | 2 cut(s) | 422, 570 |
| ScrFI | CCNGG | 3 cut(s) | 215, 239, 592 |
| SduI | GDGCHC | 1 cut(s) | 46 |
| SfaNI | GCATC | 2 cut(s) | 202, 550 |
| Sfr274I | CTCGAG | 1 cut(s) | 227 |
| SinI | GGWCC | 1 cut(s) | 66 |
| SlaI | CTCGAG | 1 cut(s) | 227 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 323, 474 |
| SmlI | CTYRAG | 2 cut(s) | 197, 227 |
| SmoI | CTYRAG | 2 cut(s) | 197, 227 |
| SpeI | ACTAGT | 1 cut(s) | 329 |
| Sse9I | AATT | 4 cut(s) | 6, 125, 131, 536 |
| SsiI | CCGC | 1 cut(s) | 187 |
| SspMI | CTAG | 4 cut(s) | 159, 234, 330, 446 |
| StyD4I | CCNGG | 3 cut(s) | 213, 237, 590 |
| StyI | CCWWGG | 1 cut(s) | 61 |
| TaaI | ACNGT | 1 cut(s) | 340 |
| TaiI | ACGT | 3 cut(s) | 57, 246, 423 |
| TaqI | TCGA | 2 cut(s) | 204, 228 |
| TasI | AATT | 4 cut(s) | 6, 125, 131, 536 |
| TfiI | GAWTC | 2 cut(s) | 210, 344 |
| Tru1I | TTAA | 4 cut(s) | 198, 255, 522, 530 |
| Tru9I | TTAA | 4 cut(s) | 198, 255, 522, 530 |
| TscAI | CASTG | 1 cut(s) | 77 |
| TseFI | GTSAC | 1 cut(s) | 55 |
| Tsp45I | GTSAC | 1 cut(s) | 55 |
| TspDTI | ATGAA | 3 cut(s) | 380, 384, 548 |
| TspRI | CASTG | 1 cut(s) | 77 |
| Vha464I | CTTAAG | 1 cut(s) | 197 |
| VpaK11BI | GGWCC | 1 cut(s) | 66 |
| XapI | RAATTY | 2 cut(s) | 6, 131 |
| XbaI | TCTAGA | 1 cut(s) | 158 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 59 |
| XhoI | CTCGAG | 1 cut(s) | 227 |
| XmnI | GAANNNNTTC | 1 cut(s) | 513 |
| XspI | CTAG | 4 cut(s) | 159, 234, 330, 446 |